Gene

KWMTBOMO04960

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(+):3288034-3288913      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.378

CDS

ATGGCACCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCGGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Similarity

Belongs to the protein kinase superfamily. Tyr protein kinase family.

Uniprot

Q5KTM5   Q6UV17   A0A3S2LP03   A0A3S2KYN2   A0A3S2P9Q3   A0A3S2NHP4   + More
A0A3S2NMX8   A0A3S2NMS5   A0A3S2LQP1   A0A2H1VFZ3   B9WPT5   J9GT67   T2M6M7   A0A2H1WAR9   A0A0P4VXU0   A0A2H1WCG9   A0A3S2TFH4   A0A1Y1S3P2   A0A3D5S1K1   A0A3S2PF93   A0A3S2PHM8   A0A3S2LI48   A0A1E1XGQ7   A0A2G8JWN9   A0A023FCJ1   A0A147BNC9   A0A1E1XVB3   A0A131Y4D1   A0A147BJ69   W4XMI9   A0A147BU27   A0A0P4VVV8   A0A131Y4Q4   V5HJ96   A0A1E1XN74   A0A1E1XNW6   W4Y4X9   A0A090XE26   A0A1E1XNL1   A0A131Y4I8   A0A1E1XJ46   A0A1E1X2T1   A0A1E1X2P5   W4YZP0   A0A1E1X2R3   W4XCH0   A0A147BMA3   A0A0K8RG16   W4ZK03   W4ZIH4   A0A131Y3W4   A0A2G8L6L5   W4Y8J8   A0A147BJQ0   A0A2R5LED3   A0A131XUP0   A0A147BQS9   A0A2B4RTL1   A0A210QN79   A0A147BRL4   K1QCH1   A0A0C9SB62   A0A1E1XPS6   A0A131XQR9   A0A147BNQ9   K7EY85   A0A131XRE4   A0A1E1XM20   W4Z5Z2   A0A147BQ97   W4Y3H0   A0A147BJZ4   A0A131XTA8   K7EYG1   K7EWV4  

Pubmed

23251564    24065732    28345194    30148503    28503490    29023486    + More
29652888    29209593    25765539    25970599    28812685    22992520    26131772    17381049   

EMBL

AB126052    BAD86652.1    AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    + More
RSAL01000487    RVE41561.1    RSAL01000164    RVE45343.1    RSAL01003136    RVE40332.1    RSAL01000002    RVE55041.1    RVE55094.1    RVE54942.1    RSAL01000422    RVE41792.1    ODYU01002162    SOQ39302.1    FM995623    CAX36785.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    ODYU01007424    SOQ50185.1    GDRN01105059    JAI57791.1    ODYU01007423    SOQ50184.1    RSAL01000193    RVE44603.1    LWDP01000391    ORD92879.1    DPOC01000269    HCX22453.1    RSAL01000058    RVE49758.1    RSAL01000030    RVE51708.1    RSAL01000110    RVE47159.1    GFAC01000919    JAT98269.1    MRZV01001153    PIK40187.1    GBBK01004986    JAC19496.1    GEGO01003111    JAR92293.1    GFAA01000199    JAU03236.1    GEFM01001453    JAP74343.1    GEGO01004630    JAR90774.1    AAGJ04112043    GEGO01001118    JAR94286.1    GDRN01111277    JAI56804.1    GEFM01002324    JAP73472.1    GANP01010920    JAB73548.1    GFAA01002657    JAU00778.1    GFAA01002479    JAU00956.1    AAGJ04110620    GBIH01002577    JAC92133.1    GFAA01002514    JAU00921.1    GEFM01002394    JAP73402.1    GFAA01004201    JAT99233.1    GFAC01005646    JAT93542.1    GFAC01005665    JAT93523.1    AAGJ04095885    GFAC01005670    JAT93518.1    AAGJ04105891    GEGO01003518    JAR91886.1    GADI01003787    JAA70021.1    AAGJ04028970    GEFM01001613    JAP74183.1    MRZV01000196    PIK55907.1    AAGJ04028723    AAGJ04028724    AAGJ04028725    GEGO01004433    JAR90971.1    GGLE01003659    MBY07785.1    GEFM01005848    JAP69948.1    GEGO01002277    JAR93127.1    LSMT01000297    PFX20951.1    NEDP02002733    OWF50189.1    GEGO01002025    JAR93379.1    JH815916    EKC31648.1    GBZX01002173    JAG90567.1    GFAA01002385    JAU01050.1    GEFM01006417    JAP69379.1    GEGO01003312    JAR92092.1    AGCU01082246    GEFM01005882    JAP69914.1    GFAA01003161    JAU00274.1    AAGJ04079835    GEGO01002473    JAR92931.1    AAGJ04106435    GEGO01004304    JAR91100.1    GEFM01005909    JAP69887.1    AGCU01122093    AGCU01000442   

Proteomes

UP000283053    UP000230750    UP000007110    UP000225706    UP000242188    UP000005408    + More
UP000007267   

PRIDE

Q5KTM5    Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01873   eIF-5_eIF-2B
PF01585   G-patch
PF08159   NUC153
PF00458   WHEP-TRS
PF00086   Thyroglobulin_1
PF07714   Pkinase_Tyr
PF00083   Sugar_tr

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR036857   Thyroglobulin_1_sf       
IPR000716   Thyroglobulin_1       
IPR000719   Prot_kinase_dom       
IPR008266   Tyr_kinase_AS       
IPR020635   Tyr_kinase_cat_dom       
IPR017441   Protein_kinase_ATP_BS       
IPR001245   Ser-Thr/Tyr_kinase_cat_dom       
IPR011009   Kinase-like_dom_sf       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR028082   Peripla_BP_I       

SUPFAM

SSF56219   SSF56219        + More
SSF75689   SSF75689       
SSF100966   SSF100966       
SSF54928   SSF54928       
SSF50978   SSF50978       
SSF47060   SSF47060       
SSF57610   SSF57610       
SSF56112   SSF56112       
SSF103473   SSF103473       
SSF53822   SSF53822       

Gene 3D

3.60.10.10     3.30.70.330     4.10.800.10    

CDD

cd12647  RRM_UHM_SPF45
cd00191  TY
cd06174  MFS

ProteinModelPortal

Q5KTM5   Q6UV17   A0A3S2LP03   A0A3S2KYN2   A0A3S2P9Q3   A0A3S2NHP4   + More
A0A3S2NMX8   A0A3S2NMS5   A0A3S2LQP1   A0A2H1VFZ3   B9WPT5   J9GT67   T2M6M7   A0A2H1WAR9   A0A0P4VXU0   A0A2H1WCG9   A0A3S2TFH4   A0A1Y1S3P2   A0A3D5S1K1   A0A3S2PF93   A0A3S2PHM8   A0A3S2LI48   A0A1E1XGQ7   A0A2G8JWN9   A0A023FCJ1   A0A147BNC9   A0A1E1XVB3   A0A131Y4D1   A0A147BJ69   W4XMI9   A0A147BU27   A0A0P4VVV8   A0A131Y4Q4   V5HJ96   A0A1E1XN74   A0A1E1XNW6   W4Y4X9   A0A090XE26   A0A1E1XNL1   A0A131Y4I8   A0A1E1XJ46   A0A1E1X2T1   A0A1E1X2P5   W4YZP0   A0A1E1X2R3   W4XCH0   A0A147BMA3   A0A0K8RG16   W4ZK03   W4ZIH4   A0A131Y3W4   A0A2G8L6L5   W4Y8J8   A0A147BJQ0   A0A2R5LED3   A0A131XUP0   A0A147BQS9   A0A2B4RTL1   A0A210QN79   A0A147BRL4   K1QCH1   A0A0C9SB62   A0A1E1XPS6   A0A131XQR9   A0A147BNQ9   K7EY85   A0A131XRE4   A0A1E1XM20   W4Z5Z2   A0A147BQ97   W4Y3H0   A0A147BJZ4   A0A131XTA8   K7EYG1   K7EWV4  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003723   GO:0005634  

PANTHER

PTHR13288   PTHR14927  

Length:

227

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00061

Exp number, first 60 AAs:

0.00055

Total prob of N-in:

0.01891

outside

1  -  227

 

 

Pi

67.237671

Theta

53.337488

Tajima's D

-0.320453

CLR

0.0005

CSRT

0.285885705714714

Interpretation

Uncertain