Silkworm Genome Informatics Database

Gene

KWMTBOMO04945

Annotation

hypothetical_protein_L798_04777_[Zootermopsis_nevadensis]

Location

Bomo_Chr9(-):2251622-2253803 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.609

CDS

ATGTCGTCGACCGAGTCGGAGTCTGTTTCAAATGCAGAGTACGAAAGTTTATCCCAGAAAATCATCGTGGAAGTACAGAAAAGACCAGCTTTATACGATACTACTTTGCGTCAATACAGTGATAGAAATGTGAAAAATAAACTTTGGGAGGAAGTTTATCACAACGTAGTTAATAATTGGATGACACTGTCGGAGGCTGAGAAAAAAAAGAAGGGTAGTACAATACAAAAGAAATGGAAGAATATGCGCGACAGTTTTTCTAAAGAATTAGCTATACAGCGTGGTAAATCTGGTCAAGGTGCTATAAAAAAGAAAAAGTACGTTCATTTCGATTCACTGTTGTTTTTGGTACCATCTTTACAAAAAAGGGAGACTAGCAGTAATATCGAATTTACTTCACAAGATAACCCTGATACGGACTTATCTGAAACCCTTCCACTAACGAATAGTAATCGAACCCCATCCAGTAAGAAGGCTTCCAAAAGCCGAAGTAGCTGTGAAGATTATGAACAAAAATTGTTAAATTTTTTGAATACAAAGGAGAATGCGTGTGAATATGACGAAGATATAAACTTTTCACAAATGATTGTACCAATGTTACGGAAACTTAATGACGATCAGAAACATTTTGCCAAAGTAGAAATTATGAATATTTTGCAAAAAGCCAAATCTTTCTATCCATTCGAAACACCAATTCGTAATCAAAGACCAAGATCACATTTGTCATTCACGCAAACGTCGTCTCCGCAATCATATTATACATATTCCCCATCTCCACCTCCAACCATGCCGATAATGTCACCAGTTTCAACACCAGTACGACAGCTTGTGTCAGGACCTGCAAAACAAACCATCTATTTGCCACTTAATACTCCTGTTCCACCAACATTACAAGCAACCGTGCATTCTCTTCAAGAACTCGAGCAACAAGAACAACAGTTACAATATGCACAAAATGAACAAGAAGAGCCTACAGCAGCCAATTATCTGTCGCAATTTCAAGAACAATAA

Protein

MSSTESESVSNAEYESLSQKIIVEVQKRPALYDTTLRQYSDRNVKNKLWEEVYHNVVNNWMTLSEAEKKKKGSTIQKKWKNMRDSFSKELAIQRGKSGQGAIKKKKYVHFDSLLFLVPSLQKRETSSNIEFTSQDNPDTDLSETLPLTNSNRTPSSKKASKSRSSCEDYEQKLLNFLNTKENACEYDEDINFSQMIVPMLRKLNDDQKHFAKVEIMNILQKAKSFYPFETPIRNQRPRSHLSFTQTSSPQSYYTYSPSPPPTMPIMSPVSTPVRQLVSGPAKQTIYLPLNTPVPPTLQATVHSLQELEQQEQQLQYAQNEQEEPTAANYLSQFQEQ

Uniprot

A0A2S2NVF4 K7IX93 A0A0L0BVE8 A0A1E1WLC3 X1X940 A0A3S1A194 + More
A0A1A8BJ41 A0A1A8UXG3 A0A1A8J5L9 A0A1A8RMH5 A0A0P4WL80

Pubmed

20075255 26108605

EMBL

GGMR01008582 MBY21201.1 AAZX01000580 AAZX01000618 JRES01001388 KNC23209.1 + More
GDQN01003403 JAT87651.1 ABLF02034356 RQTK01000014 RUS91301.1 HADZ01003278 SBP67219.1 HADY01009641 HAEJ01011814 SBS52271.1 HAED01018472 SBR04917.1 HAEH01018199 SBS07320.1 GDRN01021545 JAI67801.1

Proteomes

UP000002358 UP000037069 UP000007819 UP000271974

Pfam

PF10545   MADF_DNA_bdg        + More
PF13499   EF-hand_7
PF02944   BESS

Interpro

IPR039353   TF_Adf1        + More
IPR006578   MADF-dom
IPR004210   BESS_motif
IPR011992   EF-hand-dom_pair
IPR002048   EF_hand_dom
IPR018247   EF_Hand_1_Ca_BS

SUPFAM

SSF47473 SSF47473

CDD

cd00051 EFh

ProteinModelPortal

A0A2S2NVF4 K7IX93 A0A0L0BVE8 A0A1E1WLC3 X1X940 A0A3S1A194 + More
A0A1A8BJ41 A0A1A8UXG3 A0A1A8J5L9 A0A1A8RMH5 A0A0P4WL80

KEGG

NA

GO

GO:0005634 GO:0003677 GO:0005509 GO:0022857 GO:0006810 GO:0006508 GO:0015074 GO:0007166 GO:0006032 GO:0005515 GO:0016742 GO:0003824

PANTHER

PTHR12243

Subcellular location

Nucleus

Length:

336

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01222

outside

1 - 336

Pi

149.78622

Theta

135.630337

Tajima's D

0.094669

CLR

32.6107

CSRT

0.397930103494825

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree