SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04934  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008004
Annotation
PREDICTED:_uncharacterized_protein_LOC106130280_[Amyelois_transitella]
Location
Bomo_Chr9(-):1920487-1923084      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.827
 

Sequence

CDS
ATGGCCGATCAAGTCGAGTCAATGTCAGACGCCGAGTTACGAACAAAATTGGCAGAGCATGGATTTCCAGTTATGCCGATTACGGCTTCCACGCGGAAACTTCTGGTGAAGAAACTGAAGATGGTCTTGGATAACAAAGGTAGACCTCTAGCAAGTGACAACAAGGCGGAGAATAGGCGGTCTTTGGCGCGGTACTCTAGCGGTGAGGAGTCTGACTTAGACAACGTGAATAAGATCAAAGACAAACGCGGGCGTCGAGCGACAACTGGTGGTAGCATGTTGCCACCGTCTGTCAGCAAAACGAGAAGAACGCCCTCCAAGAAAAGCTCACCAGCCAGGCGTGATTCGGATAAGGGCTCTGAATCTGAGGACGAGAAGTCTGTGATACGACACGAGGAGGTTGAAACGATAACCAAGCGGCAAGTGACACGCACCTTTGTCGGTAATGACCAGGATGATTATGAAACTGGCTCTGATAGTGATGTTGATGTTGACAAAAAAACATCTACACCATTTCGCAGCAACTCACGGTCCAGTGATTACATATCAAGTACTTTACCAACTAATGATACCTCGACAAGTCCAAAGTCACCTTTGTTTTCTCGCCCTTCTCTGCCAAGCACCAACTACACCTCACCTATGTCATCTTCAGATCATTTGAATTCCATAAGATCAAGACTGGGTCTCACATCTACACTTGGTGATAGACCATCTATTGGAAACTATACCTCTCGATTTTCTAGCAGTACTTATAAACCTGTGACAAGTACATACCAGCCTTCAACGTCTACTGTTGATGAGGTGGAATCTCCATATTTAAGTAACTTCACCCGCCGCCTGTCTTCGCTAAAGGCTGAGCCACCGAAACAATCGCCTTTTCTTGACCGAGACACAACCAATGGAAGCACAATGATACCTCGTCGGTCTTATATAACTGGAATGGCCAGATCTGATATAGTCGATTATAAAATGGTAAATGAAAAGAAATTTTTGAAAAATAACCTCGTATCTCTGGCTCTGGTTGGTCTTGTGGCTCTTTTTTTTTTTTGCTTATTTTTTATGTACATGGTAAAAAAGAATGACATAACATCCGTTGTGGATGATCAGAACAGTGTTATACCTATTTGTCATTTGAATATACCTGGTAACAGGCCTGGTATCAATTGTGTGCCTAAGGAACAAGTCAGCTATGCTAAAGACCTTTTGAAGGTAATTCATCCAGAGTTGACAACACGAATAGCATCATACAAATGTGGTCAGCCAGGAGCTATGCCTTATTTGACTGAGCGAGAAATTTTGGATATTGCCAGGTCTAAAGCAGACTCGACTGATGTAAGCCAGTGTCGCACAGATCTGAATAACTTGCAGGTGCTGCTAATTAACAATCCCAGGTGGGGTCTTAATGTTGTGCAATTAAAAAATCTTTATACAAAAGATGCAGATTTCTCTCCAATATCCAACACTGATTTGATTGTACAGCAAAGAACTAAAGGTAGCGTTGCAATCACATTAACTGATCCATCCACACCACTCACTTGTTTATTGGTGAACACAATTTATTCAGCTGGATCGACCATCATTATTGTAGCTTTCATCACATTATTAGCTGTTGCTGCTCAAGCCTTTTACAAATTTTATTTGAACTATAGAAAACGTAAAAATGATGAAATCTATTCGCTTGTTGGACAGATTATTGATGTAATTTCTCAGGAAACTGTAGATAGTGGTGAACCTTATATATCTGTAGATCATGTTCGAGATACACTGATATCACCGGAGAACAGGGAAAAACTAGCATCTGTTTGGGATGCTGCTGTCAAATTCATACAAAGAAATGAAAGCAGAGTGAGAATGGAGGTTCAATCTGTTGATGGAGAAGACTCCAGGGTTTGGAGATGGATATCAAGTAACAGTCCTAAAAGGAGTGCAGCATGGCAAGGACAAGCATTTGAAACTCAAGAAGGCTCTGTTAATAACCTAACTGTATCACCAACTCCATGCCTTAAAATACGCCACATGTTTGATAAAAATGATGCAAACCCAAATCTAAGGACAATCATTCAGGATGTAATTCTCGAGAAATGTGGTGACAGATGCAACATCTTACATATTGAGATAGAGAGGAGCTCGTGCTGTGTATATGTGAAATGTGCGAATCCGTCAGACGCGGGCGTCGTGTACCGCAGCCTTCACGGTTGGTGGTACGAGGGTAGACTTATCACTGTTAAATACTTGCGTTTAGAGCGCTACATGCAGAGGTTCCCAAATTCTCCATCTATCGGACCATATTTGAAAATGTCCCGTCCTCAACGCTCATGGGATGAGTAA
Protein
MADQVESMSDAELRTKLAEHGFPVMPITASTRKLLVKKLKMVLDNKGRPLASDNKAENRRSLARYSSGEESDLDNVNKIKDKRGRRATTGGSMLPPSVSKTRRTPSKKSSPARRDSDKGSESEDEKSVIRHEEVETITKRQVTRTFVGNDQDDYETGSDSDVDVDKKTSTPFRSNSRSSDYISSTLPTNDTSTSPKSPLFSRPSLPSTNYTSPMSSSDHLNSIRSRLGLTSTLGDRPSIGNYTSRFSSSTYKPVTSTYQPSTSTVDEVESPYLSNFTRRLSSLKAEPPKQSPFLDRDTTNGSTMIPRRSYITGMARSDIVDYKMVNEKKFLKNNLVSLALVGLVALFFFCLFFMYMVKKNDITSVVDDQNSVIPICHLNIPGNRPGINCVPKEQVSYAKDLLKVIHPELTTRIASYKCGQPGAMPYLTEREILDIARSKADSTDVSQCRTDLNNLQVLLINNPRWGLNVVQLKNLYTKDADFSPISNTDLIVQQRTKGSVAITLTDPSTPLTCLLVNTIYSAGSTIIIVAFITLLAVAAQAFYKFYLNYRKRKNDEIYSLVGQIIDVISQETVDSGEPYISVDHVRDTLISPENREKLASVWDAAVKFIQRNESRVRMEVQSVDGEDSRVWRWISSNSPKRSAAWQGQAFETQEGSVNNLTVSPTPCLKIRHMFDKNDANPNLRTIIQDVILEKCGDRCNILHIEIERSSCCVYVKCANPSDAGVVYRSLHGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSRPQRSWDE

Summary

Uniprot
H9JEQ7   A0A1E1WLP0   A0A2H1VC61   A0A194QKM1   A0A194QCS5   A0A2W1BRW4   + More
A0A212ELG8   A0A0L7LS27   A0A1Y1LJU9   D2A5N3   A0A1W4WZ45   A0A0C9R5I5   A0A026W3C0  
Pubmed
19121390    26354079    28756777    22118469    26227816    28004739    + More
18362917    19820115    24508170    30249741   
EMBL
BABH01023464    GDQN01003217    JAT87837.1    ODYU01001772    SOQ38439.1    KQ461198    + More
KPJ05949.1    KQ459185    KPJ03343.1    KZ149993    PZC75520.1    AGBW02014068    OWR42323.1    JTDY01000211    KOB78275.1    GEZM01055073    GEZM01055072    JAV73171.1    KQ971345    EFA05796.2    GBYB01011569    JAG81336.1    KK107485    QOIP01000006    EZA50081.1    RLU21422.1   
Proteomes
UP000005204    UP000053240    UP000053268    UP000007151    UP000037510    UP000007266    + More
UP000192223    UP000053097    UP000279307   
PRIDE
H9JEQ7   
Pfam
PF03020   LEM        + More
PF09402   MSC
Interpro
IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR011015   LEM/LEM-like_dom_sf       
IPR041885   MAN1_winged_helix_dom       
IPR034394   Man1_RRM       
IPR018996   MSC       
IPR003887   LEM_dom       
IPR035979   RBD_domain_sf       
IPR034997   Man1       
SUPFAM
SSF54928   SSF54928        + More
SSF63451   SSF63451       
Gene 3D
1.10.10.1180     1.10.720.40     3.30.70.330    
CDD
cd12286  RRM_Man1
ProteinModelPortal
H9JEQ7   A0A1E1WLP0   A0A2H1VC61   A0A194QKM1   A0A194QCS5   A0A2W1BRW4   + More
A0A212ELG8   A0A0L7LS27   A0A1Y1LJU9   D2A5N3   A0A1W4WZ45   A0A0C9R5I5   A0A026W3C0  
PDB
5ZOK     E-value=4.51277e-25,     Score=287

Ontologies

KEGG
101739908    K19410 inner nuclear membrane protein Man1 | (RefSeq) uncharacterized LOC101739908
GO
GO:0016021   GO:0003676   GO:0005637   GO:1902531   GO:0001525   GO:0006997   GO:0030514   GO:0006998   GO:0005639   GO:0000166   GO:0004190   GO:0006508   GO:0015074   GO:0007166   GO:0006032   GO:0005515   GO:0016742   GO:0003824  
PANTHER
PTHR13428:SF12  

Topology

Length:
775
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
46.5506500000001
Exp number, first 60 AAs:
0.01415
Total prob of N-in:
0.23596
outside
1  -  334
TMhelix
335  -  357
inside
358  -  520
TMhelix
521  -  543
outside
544  -  775
 
 

Population Genetic Test Statistics

Pi
212.156568
Theta
203.072328
Tajima's D
-0.540323
CLR
0.561335
CSRT
0.231488425578721
Interpretation
Uncertain
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