Gene

KWMTBOMO04933  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008076

Annotation

PREDICTED:_2-oxoisovalerate_dehydrogenase_subunit_beta?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr9(+):1906655-1918877      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.256 Mitochondrial   Reliability : 1.58

CDS

ATGACAAGTTTAAGTACAAAAAGTATTGTGTTCCATAAATTAATTCGAAATGTTAATAACTACGCTAAAAGAATGTCTTCACATTTTATTTATTATCCAGATAAAGAAAGGCCAGTAGATGGAGAAACGACAAAGATGAATATGATGCAAGCAATAAACAATGCAATGGACATCACATTGAAGAATAATCCAACTGCTGTATTGTTCGGTGAAGATGTCGCATTCGGGGGTGTCTTCAGATGTGCTTTGGGGTTACAGGAGAAATATGGCAAGGACCGTGTTTTCAATACTCCACTATGTGAACAGGGTATTGCCGGCTTCGGTATAGGTCTAGCCACTGCAGGCGCAACTGCTATTGCTGAAATACAATTTGCTGATTACATATTTCCAGCATTTGATCAGATAGTGAACGAAGCTGCCAAAGCGAGGTACAGATCTGGAGGGGAGTACGACAGCGGCGCCCTCACGGTCCGCGCGCCCTGCAGTGCGGTCGGGCACGGCGGACTCTACCACTCCCAGAGTCCGGAGGCCTTCTTTGCACATGTCCCCGGTCTCCGGGTGGTGGTGCCTCGCGGGCCCATAGCGGCCAAGGGTCTGCTGCTGGCCTGCATCCGCGAGAGGGACCCCTGCGTGTTCCTGGAACCGAAGATACTGTACCGGTCGGCAGCCGAAGAAGTACCCGTCGAGGATTACACGCTACCGCTGGGAAAGGCGCAGACGTTAAGAGTCGGCGCCGCGGCCACGCTGGTGGGCTGGGGCACGCAGGTTCACGTGCTGCTGGAGGTAGCAGACATGGCGCGGGACAAGCTCGGCGTCAGCTGTGACGTCATCGATCTGCAGTCGATCCTGCCCTGGGACGAGGAGACCGTGTGCAATTCCGTGAAGAAAACTGGGCGGTGCTTGATATCCCACGAGGCCCCGCTCACGTCGGGGTTCGGCGCCGAGCTCGCCGCCACCGTGCAGGAGGAATGTTTTCTGCACTTGGAGGCGCCGATAGCTCGAGTGACCGGCTGGGACGCGCCCTTCCCGCATGTCTTCGAACCTTTCTACTTACCGGACAAGTGGCGCTGCTACCAAGCCTTGATACAACTTATTAACTATTGA

Protein

MTSLSTKSIVFHKLIRNVNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNNPTAVLFGEDVAFGGVFRCALGLQEKYGKDRVFNTPLCEQGIAGFGIGLATAGATAIAEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAPCSAVGHGGLYHSQSPEAFFAHVPGLRVVVPRGPIAAKGLLLACIRERDPCVFLEPKILYRSAAEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLGVSCDVIDLQSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPHVFEPFYLPDKWRCYQALIQLINY

Uniprot

A0A2A4JEM1   A0A2H1VC69   A0A3S2LUE1   A0A194QLW2   H9JEX9   A0A212ELF7   + More
A0A194QD47   B0X5D4   A0A1Q3F6Y1   A0A0N8ES10   A0A182GQD9   A0A182TMH6   A0A182WJ45   A0A2M3Z7D0   A0A2M4AL73   A0A2M4AL59   A0A2M4AM84   A0A182PQB0   Q7QJI1   A0A2M3Z7P6   A0A182X3L8   A0A182I3F1   A0A2M4BRR3   A0A084WNF8   A0A2M3Z7U5   A0A182NHR4   A0A182JNC6   W5JJS3   A0A182RNF4   D6W8S4   A0A182M803   A0A182KRH0   A0A2R5L8N2   A0A182VFT1   A0A182QIR8   A0A182FG02   G3MQQ0   A0A182JD95   A0A023GME0   A0A182XZ02   A0A1Y1LXF5   U5ESH2   E9HG12   A0A226CZB8   A0A1E1X607   A0A0P4ZZY0   A0A0L7QJJ9   A0A0P6I319   A0A088ADW9   A0A0P6F5F7   A0A131XLK9   A0A0P6AHU0   L7MB32   A0A224Z7A2   A0A0A9XMT4   A0A023F899   A0A023FX40   A0A0P6EUA5   A0A1J1J880   A0A1B6DYD4   A0A224XEG4   R4G3S1   A0A131Z0J0   A0A1L8E144   A0A0N7Z9G1   T1KER6   A0A3P9I8H2   A0A3P9JWQ4   A0A3B3D2S8   A0A232EVA3   A0A0P5MZL2   A0A0L0CJM0   A0A0P5KRP3   A0A3B3HQ15   A0A0P5VTF6   A0A0T6BBV5   A0A3Q3JJH5   A0A0K0EJZ8   E2A276   A0A195FSL3   A0A3R7SHD2   A0A0P5BIH0   A0A0P5LPU2   A0A1B0CN13   A0A023FJE6   A0A087TQV4   A0A0K0G0S9   A0A3Q3XIY9   A0A0C9R1Z1   A0A0N4Z1T4   A0A3P8VK17   A0A1A9YJW5   A0A1B0BQG0   K9J0G9   A0A158NW19   G3NNI6   B7PR76   B4LQY6   I3ITY5   D3TPF3  

Pubmed

26354079    19121390    22118469    26999592    26483478    12364791    + More
14747013    17210077    24438588    20920257    23761445    18362917    19820115    20966253    22216098    25244985    28004739    21292972    28503490    28049606    25576852    28797301    25401762    26823975    25474469    26830274    27129103    17554307    29451363    28648823    26108605    20798317    24487278    21347285    17994087    25186727    20353571   

EMBL

NWSH01001740    PCG70269.1    ODYU01001772    SOQ38440.1    RSAL01000211    RVE44205.1    + More
KQ461198    KPJ05950.1    BABH01023463    BABH01023464    AGBW02014068    OWR42324.1    KQ459185    KPJ03344.1    DS232375    EDS40819.1    GFDL01011725    JAV23320.1    GDUN01000770    JAN95149.1    JXUM01015832    KQ560440    KXJ82398.1    GGFM01003663    MBW24414.1    GGFK01008176    MBW41497.1    GGFK01008202    MBW41523.1    GGFK01008560    MBW41881.1    AAAB01008807    EAA04690.2    GGFM01003783    MBW24534.1    APCN01000207    GGFJ01006553    MBW55694.1    ATLV01024599    KE525352    KFB51752.1    GGFM01003757    MBW24508.1    ADMH02001234    ETN63553.1    KQ971312    EEZ98268.2    AXCM01010044    GGLE01001722    MBY05848.1    AXCN02000376    JO844201    AEO35818.1    GBBM01001378    JAC34040.1    GEZM01044492    JAV78179.1    GANO01003244    JAB56627.1    GL732638    EFX69339.1    LNIX01000050    OXA37964.1    GFAC01004697    JAT94491.1    GDIP01209098    GDIP01090962    JAJ14304.1    KQ415080    KOC58822.1    GDIQ01010411    JAN84326.1    GDIQ01061165    JAN33572.1    GEFH01002015    JAP66566.1    GDIP01030452    JAM73263.1    GACK01004675    JAA60359.1    GFPF01011144    MAA22290.1    GBHO01036220    GBHO01036219    GBHO01036217    GBHO01036215    GBHO01036214    GBHO01035577    GBHO01022648    GBHO01022647    GBHO01022646    GBHO01022645    GBHO01022643    GBRD01000858    GBRD01000857    GBRD01000856    GDHC01015302    GDHC01013773    GDHC01013350    JAG07384.1    JAG07385.1    JAG07387.1    JAG07389.1    JAG07390.1    JAG08027.1    JAG20956.1    JAG20957.1    JAG20958.1    JAG20959.1    JAG20961.1    JAG64963.1    JAQ03327.1    JAQ04856.1    JAQ05279.1    GBBI01001220    JAC17492.1    GBBL01001286    JAC26034.1    GDIQ01059013    JAN35724.1    CVRI01000075    CRL08645.1    GEDC01006614    JAS30684.1    GFTR01005569    JAW10857.1    ACPB03007816    GAHY01001975    JAA75535.1    GEDV01003608    JAP84949.1    GFDF01001869    JAV12215.1    GDKW01000643    JAI55952.1    CAEY01000028    NNAY01002022    OXU22286.1    GDIQ01151284    JAL00442.1    JRES01000300    KNC32608.1    GDIQ01180220    GDIQ01062966    JAK71505.1    GDIP01095560    JAM08155.1    LJIG01002147    KRT84793.1    GL435922    EFN72481.1    KQ981280    KYN43431.1    QCYY01004202    ROT61364.1    GDIP01184300    JAJ39102.1    GDIQ01175372    JAK76353.1    AJWK01019616    GBBK01002725    JAC21757.1    KK116354    KFM67493.1    GBYB01000876    GBYB01006055    JAG70643.1    JAG75822.1    JXJN01018610    GABZ01006506    JAA47019.1    ADTU01027694    ADTU01027695    ABJB010271582    DS770988    EEC09098.1    CH940649    EDW64525.2    AERX01031258    AERX01031259    AERX01031260    AERX01031261    EZ423305    ADD19581.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000005204    UP000007151    UP000053268    + More
UP000002320    UP000069940    UP000249989    UP000075902    UP000075920    UP000075885    UP000007062    UP000076407    UP000075840    UP000030765    UP000075884    UP000075881    UP000000673    UP000075900    UP000007266    UP000075883    UP000075882    UP000075903    UP000075886    UP000069272    UP000075880    UP000076408    UP000000305    UP000198287    UP000053825    UP000005203    UP000183832    UP000015103    UP000015104    UP000265200    UP000265180    UP000261560    UP000215335    UP000037069    UP000001038    UP000261600    UP000035681    UP000000311    UP000078541    UP000283509    UP000092461    UP000054359    UP000035680    UP000261620    UP000038045    UP000265120    UP000092443    UP000092460    UP000005205    UP000007635    UP000001555    UP000008792    UP000005207   

PRIDE

H9JEX9   

Pfam

PF02780   Transketolase_C        + More
PF02779   Transket_pyr

Interpro

IPR005475   Transketolase-like_Pyr-bd        + More
IPR009014   Transketo_C/PFOR_II       
IPR033248   Transketolase_C       
IPR029061   THDP-binding       

SUPFAM

SSF52518   SSF52518        + More
SSF52922   SSF52922       

Gene 3D

3.40.50.920    

ProteinModelPortal

A0A2A4JEM1   A0A2H1VC69   A0A3S2LUE1   A0A194QLW2   H9JEX9   A0A212ELF7   + More
A0A194QD47   B0X5D4   A0A1Q3F6Y1   A0A0N8ES10   A0A182GQD9   A0A182TMH6   A0A182WJ45   A0A2M3Z7D0   A0A2M4AL73   A0A2M4AL59   A0A2M4AM84   A0A182PQB0   Q7QJI1   A0A2M3Z7P6   A0A182X3L8   A0A182I3F1   A0A2M4BRR3   A0A084WNF8   A0A2M3Z7U5   A0A182NHR4   A0A182JNC6   W5JJS3   A0A182RNF4   D6W8S4   A0A182M803   A0A182KRH0   A0A2R5L8N2   A0A182VFT1   A0A182QIR8   A0A182FG02   G3MQQ0   A0A182JD95   A0A023GME0   A0A182XZ02   A0A1Y1LXF5   U5ESH2   E9HG12   A0A226CZB8   A0A1E1X607   A0A0P4ZZY0   A0A0L7QJJ9   A0A0P6I319   A0A088ADW9   A0A0P6F5F7   A0A131XLK9   A0A0P6AHU0   L7MB32   A0A224Z7A2   A0A0A9XMT4   A0A023F899   A0A023FX40   A0A0P6EUA5   A0A1J1J880   A0A1B6DYD4   A0A224XEG4   R4G3S1   A0A131Z0J0   A0A1L8E144   A0A0N7Z9G1   T1KER6   A0A3P9I8H2   A0A3P9JWQ4   A0A3B3D2S8   A0A232EVA3   A0A0P5MZL2   A0A0L0CJM0   A0A0P5KRP3   A0A3B3HQ15   A0A0P5VTF6   A0A0T6BBV5   A0A3Q3JJH5   A0A0K0EJZ8   E2A276   A0A195FSL3   A0A3R7SHD2   A0A0P5BIH0   A0A0P5LPU2   A0A1B0CN13   A0A023FJE6   A0A087TQV4   A0A0K0G0S9   A0A3Q3XIY9   A0A0C9R1Z1   A0A0N4Z1T4   A0A3P8VK17   A0A1A9YJW5   A0A1B0BQG0   K9J0G9   A0A158NW19   G3NNI6   B7PR76   B4LQY6   I3ITY5   D3TPF3  

PDB

2J9F     E-value=4.84828e-133,     Score=1215

KEGG

101739671    K00167 2-oxoisovalerate dehydrogenase E1 component beta subunit [EC:1.2.4.4] | (RefSeq) 2-oxoisovale

PATHWAY

00280    Valine, leucine and isoleucine degradation - Bombyx mori (domestic silkworm)
00640    Propanoate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0003824   GO:0009083   GO:0007584   GO:0005739   GO:0003826   GO:0005947   GO:0004739   GO:0008152   GO:0004190   GO:0006508   GO:0015074   GO:0007166   GO:0006032   GO:0005515   GO:0016742  

Length:

367

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.05628999999998

Exp number, first 60 AAs:

0.00065

Total prob of N-in:

0.21407

outside

1  -  367

 

 

Pi

291.353053

Theta

201.828162

Tajima's D

1.615719

CLR

0.098833

CSRT

0.811459427028649

Interpretation

Uncertain