Gene

KWMTBOMO04922

Pre Gene Modal

BGIBMGA008007

Annotation

PREDICTED:_protein_GDAP2_homolog_[Bombyx_mori]

Location

Bomo_Chr9(-):1555359-1563219      View in EpiBrowser

Full name

Protein GDAP2 homolog      

Location in the cell

Extracellular   Reliability : 1.301 Nuclear   Reliability : 1.504

CDS

ATGGACAGTTCGGTGTGCGGGATGCGCGCGCCGGGCGAGTGCTGGTCGGTGCCGCGCTGGTCGCAGACGGTGGCCCCTCCCCCCGCCGACTACTCCAACTGCACCCCGCTGCACGCCCAGCCCGTGTTCCTGCACGACGACGCGATCAACGACCGCCTCGCGATATGGCAAGGCGACATAACAAGCTTGAGAGTGGACGCAATTACCAACACCACGGACGAGACGCTGACGGAGAGCAATGAAGTCAGCGACCGCATCATGCAAGTGGCTGGTCCGGATCTGAAAGAAGAGATCATACTCCGGGCACATGAGTGCCGCACCGGCGAGGTGGTGGTGACGCCGGGGTTCGGTCTGCAGTGCCGGCACGTCATCCACACGGTCTGCCCGAAGTACGTGTTGAAGTACCACACCGCGGCCGAGAGCTCGCTGCACAACTGCTACAAGAACGTGCTGCACGCGGCGGGCTCGCTGGGCGCGCGCTCGCTGGCGCTGTGCGTGCTCAACACGCAGCGCCGCAACTTCCCGCCGGACGTCGCCGCGCACGTCGCGCTACGCACGATCCGGCGCTACCTGGAGGGCAACGCACAGCCGCAGCTGGTGGTGGTGGCGGCGGGCGCGGTGGACGCGTCGCTGCTGGGCGCGGTGGCGCCGCTGTACTTCCCGCGGTCGGCGCGCGAGCAGGACGCGGCGCGCTGGCGGCTGCGGGAGGCGGGCGGCCGCGCCGGCGAGCCGCTGCACCACGACCGCCGGATACGCATCATCCACAACCCGCACGAGCACCCGCACCGCGACGTTACAAGAGGTTAA

Protein

MDSSVCGMRAPGECWSVPRWSQTVAPPPADYSNCTPLHAQPVFLHDDAINDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEEIILRAHECRTGEVVVTPGFGLQCRHVIHTVCPKYVLKYHTAAESSLHNCYKNVLHAAGSLGARSLALCVLNTQRRNFPPDVAAHVALRTIRRYLEGNAQPQLVVVAAGAVDASLLGAVAPLYFPRSAREQDAARWRLREAGGRAGEPLHHDRRIRIIHNPHEHPHRDVTRG

Similarity

Belongs to the GDAP2 family.

Keywords

Complete proteome   Reference proteome  

Feature

chain  Protein GDAP2 homolog

Uniprot

A0A2A4JIC9   A0A2W1BUT2   A0A2H1WB09   A0A194QK52   A0A194QIS2   A0A1Y1K1D5   + More
A0A139WML0   A0A139WMS1   E0VU06   A0A2J7PVM8   A0A067R9Y3   A0A1L8DWS6   V5I8E5   A0A182GGM1   A0A182PLD6   A0A1B0GL49   A0A182HPA4   A0A182IP73   A0A182NM75   A0A182X4A1   A0A182LB94   A0A182VM26   A0A182YFP6   Q16HP6   A0A0P6J0P4   A0A1B0AFJ6   A0A182RA27   A0A182WB63   A0A1W4WJA8   A0A1Q3FUS1   Q5TST8   A0A1Q3FUS4   R4WIA7   N6TZF6   A0A1W4WA19   B4P230   A0A2P8XXX4   B3N9U3   B4HR68   A0A0B4KFB9   Q7JUR6   B4QES0   A0A0P4VUH8   A0A3B0JT89   W5J396   A0A0L0C2N8   A0A1I8MME4   B4GDL2   A0A1B6G2K7   A0A1B6JLN4   Q292F9   B3MHT9   A0A2M4DSC5   A0A1I8PBK4   A0A0V0G603   A0A069DVE3   A0A2M4CJ41   A0A0M3QUK0   B4LMJ3   A0A2M4BJI9   A0A023FAK3   A0A224XB52   A0A1B0GCC4   A0A1B6KEQ7   B4J4Y9   A0A084WJH5   T1HPH8   A0A2M4A8T4   A0A2M3YXX2   B4KSX7   A0A2M4A8U5   A0A3M6UPH6   A0A3Q0INM4   A0A146L3B0   A0A151IKD0   B0WFM8   Q16F91   A0A151WU79   F4WXY0   A0A158NYM4   A0A195DE30   A0A0A9YY59   A0A195FTZ9   K7IYW0   A0A0D2X0I0   A0A026X3M8   A0A0L7RGX1   T2M4U9   A0A0J7L113   A0A2A3EBM5   A0A3L8DX81   A0A195B1Q6   A0A232EIQ3   A0A154PEV2   E2BE82   A0A1B0B5X7   V9IBG5   A0A2B4SZS9   E1ZV20  

Pubmed

28756777    26354079    28004739    18362917    19820115    20566863    + More
24845553    26483478    20966253    25244985    17510324    26999592    12364791    14747013    17210077    23691247    23537049    17994087    17550304    29403074    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12537569    22936249    27129103    20920257    23761445    26108605    25315136    15632085    18057021    26334808    25474469    24438588    30382153    26823975    21719571    21347285    25401762    20075255    24508170    24065732    30249741    28648823    20798317   

EMBL

NWSH01001292    PCG71817.1    KZ149993    PZC75513.1    ODYU01007453    SOQ50240.1    + More
KQ461198    KPJ05953.1    KQ459185    KPJ03351.1    GEZM01095920    JAV55263.1    KQ971312    KYB29114.1    KYB29115.1    DS235777    EEB16862.1    NEVH01020956    PNF20360.1    KK852827    KDR15394.1    GFDF01003201    JAV10883.1    GALX01004825    JAB63641.1    JXUM01061863    JXUM01061864    JXUM01061865    JXUM01061866    JXUM01061867    KQ562172    KXJ76502.1    AJWK01034191    AJWK01034192    AJWK01034193    AJWK01034194    AJWK01034195    APCN01002933    CH478152    EAT33775.1    GDUN01000373    JAN95546.1    GFDL01003696    JAV31349.1    AAAB01008900    EAL40460.3    EDO64077.1    GFDL01003695    JAV31350.1    AK417110    BAN20325.1    APGK01048935    APGK01048936    APGK01048937    KB741135    ENN73746.1    CM000157    EDW89231.1    PYGN01001180    PSN36859.1    CH954177    EDV59639.1    CH480816    EDW46811.1    AE013599    AGB93323.1    AY122088    CM000362    CM002911    EDX06066.1    KMY92079.1    GDKW01000394    JAI56201.1    OUUW01000001    SPP74348.1    ADMH02002209    ETN57798.1    JRES01000975    KNC26618.1    CH479181    EDW31669.1    GECZ01013148    JAS56621.1    GECU01007637    GECU01003146    GECU01002227    JAT00070.1    JAT04561.1    JAT05480.1    CM000071    CH902619    EDV36926.1    KPU76529.1    GGFL01016297    MBW80475.1    GECL01003298    JAP02826.1    GBGD01001212    JAC87677.1    GGFL01001145    MBW65323.1    CP012524    ALC40809.1    CH940648    EDW59980.2    GGFJ01004098    MBW53239.1    GBBI01000225    JAC18487.1    GFTR01006790    JAW09636.1    CCAG010007840    GEBQ01030029    JAT09948.1    CH916367    EDW01695.1    ATLV01024033    KE525348    KFB50369.1    ACPB03008271    ACPB03008272    GGFK01003840    MBW37161.1    GGFM01000344    MBW21095.1    CH933808    EDW08474.1    KRG04142.1    GGFK01003717    MBW37038.1    RCHS01001045    RMX55499.1    GDHC01015608    JAQ03021.1    KQ977224    KYN04777.1    DS231919    EDS26334.1    CH478489    EAT32904.1    KQ982748    KYQ51301.1    GL888434    EGI60916.1    ADTU01004071    ADTU01004072    ADTU01004073    KQ980953    KYN11148.1    GBHO01005637    GBRD01012235    JAG37967.1    JAG53589.1    KQ981276    KYN43767.1    KE346360    KJE89094.1    KK107013    EZA62915.1    KQ414596    KOC69936.1    HAAD01000718    CDG66950.1    LBMM01001433    KMQ96326.1    KZ288292    PBC29137.1    QOIP01000003    RLU24902.1    KQ976681    KYM78215.1    NNAY01004185    OXU18225.1    KQ434878    KZC09828.1    GL447768    EFN85927.1    JXJN01008898    JR039001    AEY58478.1    LSMT01000003    PFX34679.1    GL434366    EFN74969.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000007266    UP000009046    UP000235965    + More
UP000027135    UP000069940    UP000249989    UP000075885    UP000092461    UP000075840    UP000075880    UP000075884    UP000076407    UP000075882    UP000075903    UP000076408    UP000008820    UP000092445    UP000075900    UP000075920    UP000192223    UP000007062    UP000019118    UP000192221    UP000002282    UP000245037    UP000008711    UP000001292    UP000000803    UP000000304    UP000268350    UP000000673    UP000037069    UP000095301    UP000008744    UP000001819    UP000007801    UP000095300    UP000092553    UP000008792    UP000092444    UP000001070    UP000030765    UP000015103    UP000009192    UP000275408    UP000079169    UP000078542    UP000002320    UP000075809    UP000007755    UP000005205    UP000078492    UP000078541    UP000002358    UP000008743    UP000053097    UP000053825    UP000036403    UP000242457    UP000279307    UP000078540    UP000215335    UP000076502    UP000008237    UP000092460    UP000225706    UP000000311   

PRIDE

Q7JUR6   

Pfam

PF01661   Macro        + More
PF13716   CRAL_TRIO_2
PF03982   DAGAT
PF03178   CPSF_A

Interpro

IPR035793   Macro_GDAP2        + More
IPR002589   Macro_dom       
IPR001251   CRAL-TRIO_dom       
IPR036865   CRAL-TRIO_dom_sf       
IPR007130   DAGAT       
IPR004871   Cleavage/polyA-sp_fac_asu_C       
IPR015943   WD40/YVTN_repeat-like_dom_sf       

SUPFAM

SSF52087   SSF52087       

Gene 3D

3.40.525.10     2.130.10.10    

CDD

cd02905  Macro_GDAP2_like
cd00170  SEC14

ProteinModelPortal

A0A2A4JIC9   A0A2W1BUT2   A0A2H1WB09   A0A194QK52   A0A194QIS2   A0A1Y1K1D5   + More
A0A139WML0   A0A139WMS1   E0VU06   A0A2J7PVM8   A0A067R9Y3   A0A1L8DWS6   V5I8E5   A0A182GGM1   A0A182PLD6   A0A1B0GL49   A0A182HPA4   A0A182IP73   A0A182NM75   A0A182X4A1   A0A182LB94   A0A182VM26   A0A182YFP6   Q16HP6   A0A0P6J0P4   A0A1B0AFJ6   A0A182RA27   A0A182WB63   A0A1W4WJA8   A0A1Q3FUS1   Q5TST8   A0A1Q3FUS4   R4WIA7   N6TZF6   A0A1W4WA19   B4P230   A0A2P8XXX4   B3N9U3   B4HR68   A0A0B4KFB9   Q7JUR6   B4QES0   A0A0P4VUH8   A0A3B0JT89   W5J396   A0A0L0C2N8   A0A1I8MME4   B4GDL2   A0A1B6G2K7   A0A1B6JLN4   Q292F9   B3MHT9   A0A2M4DSC5   A0A1I8PBK4   A0A0V0G603   A0A069DVE3   A0A2M4CJ41   A0A0M3QUK0   B4LMJ3   A0A2M4BJI9   A0A023FAK3   A0A224XB52   A0A1B0GCC4   A0A1B6KEQ7   B4J4Y9   A0A084WJH5   T1HPH8   A0A2M4A8T4   A0A2M3YXX2   B4KSX7   A0A2M4A8U5   A0A3M6UPH6   A0A3Q0INM4   A0A146L3B0   A0A151IKD0   B0WFM8   Q16F91   A0A151WU79   F4WXY0   A0A158NYM4   A0A195DE30   A0A0A9YY59   A0A195FTZ9   K7IYW0   A0A0D2X0I0   A0A026X3M8   A0A0L7RGX1   T2M4U9   A0A0J7L113   A0A2A3EBM5   A0A3L8DX81   A0A195B1Q6   A0A232EIQ3   A0A154PEV2   E2BE82   A0A1B0B5X7   V9IBG5   A0A2B4SZS9   E1ZV20  

PDB

4UML     E-value=1.51098e-40,     Score=416

KEGG

101745120    no KO assigned | (RefSeq) protein GDAP2 homolog

GO

GO:0016747   GO:0016021   GO:0005634   GO:0003676  

Length:

268

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.40356

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14060

outside

1  -  268

 

 

Pi

154.662224

Theta

165.42756

Tajima's D

1.41437

CLR

185.284462

CSRT

0.766261686915654

Interpretation

Uncertain