SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04921
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.638
 

Sequence

CDS
ATGTGTGCGTCATCTGATTTTATCCATGTTAGAAAATATGGACCTTCGGCGGAACAGTATGGCTTCCGAGAGGGCCGCTCAACGGTGGACGCGATCCTTCGCGTGCGGGCCCTCTCGGAGGAGGCCATCTCCAGGGGCGGGGTGGCTTTGGCGGTGTCACTCGATATCGCCAATGCATTTAACACCCTGCCCTGGTCCGTGATAGGGGCGGCGCTAGAAAGACACGGAGTGCCCCCCTACATTCGCCGGCTGGTGGGTTCCTACTTGGAAGACAGATCGGTCACATGTACCGGACACGGTGGGATCGTGCACCGGTTCCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTGCTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTGAGCGTAATCTGTTACGCAGACGACACGTTGGTCGTGGCCCGGGGAGGGAGTTTTGCTGAGTCTGCCCGTCTTGCCACCGCTGGGGTGGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTTCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGCTGAAGTATCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGTCGGCTTCTGCCCAACATCCGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACAGGAGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTGGCGAGGCTGCTGCAAAAGCCGCAACGCACCATCGCGGTCAGGGTCATTCGTGGTTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCACCGCTGACTATCAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGAGCTGGAATCATGGTCCAGGCGGCTGGCCGATCCTTCGGTTGGTCGTAGGACCGTCGAGGCGATTCGCCCAGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTTCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCAGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGATTGCGACTTGGACACGGCAGAGCATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAACCGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCGCAAGCCCGCCGCCGTCGAGCGGAGGCCAGGGAGGCGGACCTCGCCCAAGCCCTGGCCCTGCCCATGTTAATTGATTTTAATGATTAA
Protein
MCASSDFIHVRKYGPSAEQYGFREGRSTVDAILRVRALSEEAISRGGVALAVSLDIANAFNTLPWSVIGAALERHGVPPYIRRLVGSYLEDRSVTCTGHGGIVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNIRGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVARLLQKPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALTADYQWRADLRARGVARPSPSVVRARRAQSRRSELESWSRRLADPSVGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIRAEPTAECHHCDCDLDTAEHTLVACPAWEGWRRVLVAKIGTDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAEAREADLAQALALPMLIDFND

Summary

EMBL
AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    KZ150386    PZC71062.1    LBMM01024063    KMQ82623.1    KQ460685    KPJ12887.1    LBMM01019839    KMQ83438.1    LBMM01006954    KMQ90166.1    LBMM01019838    KMQ83439.1    LBMM01005733    KMQ91252.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01004272    KMQ92618.1    LBMM01006725    KMQ90373.1    LBMM01006063    KMQ90967.1    LBMM01002052    KMQ95336.1    LBMM01005948    KMQ91066.1    LBMM01008682    KMQ88705.1    LBMM01007036    KMQ90099.1    LBMM01004634    KMQ92224.1    LBMM01008448    KMQ88867.1    LBMM01014956    KMQ84982.1    LBMM01003245    KMQ93755.1    LBMM01008422    KMQ88894.1    LBMM01004505    KMQ92346.1    LBMM01003988    KMQ92922.1    LBMM01002480    KMQ94776.1    LBMM01007425    KMQ89740.1    RSAL01000109    RVE47213.1    LBMM01015018    KMQ84954.1    LBMM01015025    KMQ84953.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01005465    KMQ91492.1    LBMM01014122    KMQ85315.1    KMQ94772.1    LBMM01005474    KMQ91485.1    RSAL01003504    RVE40273.1    LBMM01005216    KMQ91703.1    GGMR01000779    MBY13398.1    LBMM01021647    KMQ83033.1    GGMR01014195    MBY26814.1    LBMM01013668    KMQ85535.1    LBMM01003575    KMQ93366.1    LBMM01005845    KMQ91162.1    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02011238    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02005203    ABLF02041316    GGMR01015159    MBY27778.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    ABLF02004597    ABLF02041324    GGMR01015354    MBY27973.1    LBMM01009527    LBMM01009515    KMQ88059.1    KMQ88067.1    ABLF02034925    ABLF02041886    LBMM01006496    KMQ90570.1    ABLF02004854    ABLF02041317    GALA01001777    JAA93075.1    GFXV01002090    MBW13895.1    GGMR01004600    MBY17219.1    GALA01001776    JAA93076.1    AB593327    BAK38648.1    GGMR01012748    MBY25367.1    GFXV01003903    MBW15708.1    LBMM01015285    KMQ84870.1    GALA01000302    JAA94550.1    GGMR01006838    MBY19457.1    GGFJ01001369    MBW50510.1    GGFJ01001727    MBW50868.1    QOIP01000010    RLU18098.1    GGMR01011682    MBY24301.1    GGFJ01001370    MBW50511.1    GGFJ01001439    MBW50580.1    ABLF02009991    ABLF02009992    ABLF02054952    GFXV01001748    MBW13553.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF00098   zf-CCHC
PF01421   Reprolysin
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=0.00387344,     Score=96

Ontologies

Topology

Length:
534
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.40132
Exp number, first 60 AAs:
0.04623
Total prob of N-in:
0.00919
outside
1  -  534
 
 

Population Genetic Test Statistics

Pi
114.658686
Theta
62.652358
Tajima's D
2.170657
CLR
0.141027
CSRT
0.909304534773261
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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