Gene

KWMTBOMO04919

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr9(+):1511050-1511786      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.675 Nuclear   Reliability : 1.957

CDS

ATGTGGTGCTACCGTCGCATGTTACGCATCAGTTGGACGAACAGGGTTAGTGACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGTTGCCTTCTATCAAAAAGCGCAAGATAGAATATCTAGGCCACGTGCTCGGGAACGATAGATACATGCTGCTGCAGTTGATAATGATGGGCAAAGTGGACGGAAAGAGATGTCCTGGGCGAAGTAAGAAGTCATGGCTCCGGAATATCCGGGAGTGGACCGGTATTGCCTCCGTCGAACAGCTGTTCCGACTGGCTGCTGATAGAGATGAATACCGGAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MWCYRRMLRISWTNRVSDETVLQRVHMSRKMLPSIKKRKIEYLGHVLGNDRYMLLQLIMMGKVDGKRCPGRSKKSWLRNIREWTGIASVEQLFRLAADRDEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A151IIH7   A0A0A9VZT6   A0A146L0Z1   A0A0K8T3U8   + More
A0A0N0PCF3   A0A2S2QJK3   A0A0J7KRQ5   A0A0A9XCF5   A0A2H1V1U0   A0A0J7KZE8   A0A2A4JBK9   A0A2S2QAF2   A0A0A9XXL9   A0A2S2P9Y7   A0A2S2NMQ2   A0A2S2PW26   J9LIJ7   A0A2W1BIM8   A0A2W1BSS7   H2YWZ6   H3B2Y3   A0A2A4JXP9   H2YWZ5   X1D4L4   A0A0B7BVF8   A0A0B7BT11   A0A0B7BUS3   A0A0B7BTW4   W4Y921   A0A0B7BVF2   A0A3S1CD12   A0A0B7BT80   A0A0B7BSZ9   A0A0B7BUR9   A0A0J7KK86   A0A0B7BSC2   A0A2W1BSK1   A0A2S2PJ33   A0A0A9WMP5   A0A0B7BVD9   A0A0B7BVD3   A0A076N1B6   A0A0B7BSB6   A0A3S3P648   A0A3S1A2L0   A0A067RNC1   A0A067QWA3   J9LZK0   A0A067QXS5   A0A2G8K327   A0A3S3NR17   X1WK45   A0A3S3RLW1   A0A3S0ZE77   A0A2S2PJ80   A0A2S2QE77   A0A3S1AZH6   A0A3S1HJZ0   A0A2G8LJK7   A0A2S2NX31   A0A1W7RAL1   A0A2H1W7G4   A0A067QUH9   A0A146LQM2   A0A2G8JE23   A0A076N3Z4   A0A2S2P7C6   A0A3S1AY56   A0A2S2PZ46   A0A0K8S9L8   A0A067RNX5   A0A067QJX4   A0A2G8KTJ4   A0A067QZY5   J9L5F2   A0A2V9X8L4   A0A2W1BGD9   A0A0A9WJT3   A0A2G8K796   A0A0A9WVQ5   D7F174   D7F175   D7F161  

Pubmed

20470440    25401762    26823975    26354079    28756777    9215903    + More
24624126    24845553    29023486   

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ977522    KYN02133.1    + More
GBHO01041897    JAG01707.1    GDHC01017214    JAQ01415.1    GBRD01005612    JAG60209.1    KQ460652    KPJ12975.1    GGMS01008711    MBY77914.1    LBMM01003995    KMQ92919.1    GBHO01028834    JAG14770.1    ODYU01000306    SOQ34818.1    LBMM01001656    KMQ95932.1    NWSH01001998    PCG69477.1    GGMS01004979    MBY74182.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    GGMR01013640    MBY26259.1    GGMR01005851    MBY18470.1    GGMS01000367    MBY69570.1    ABLF02012409    ABLF02012412    KZ150019    PZC74919.1    KZ149985    PZC75696.1    AFYH01119920    NWSH01000469    PCG76200.1    BART01031562    GAH15691.1    HACG01049496    CEK96361.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    HACG01049256    CEK96121.1    HACG01049492    CEK96357.1    AAGJ04161766    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    RQTK01000058    RUS89376.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    LBMM01006413    KMQ90631.1    HACG01049254    CEK96119.1    KZ149912    PZC78062.1    GGMR01016842    MBY29461.1    GBHO01034555    JAG09049.1    HACG01049255    CEK96120.1    HACG01049245    CEK96110.1    KF881087    AIJ27486.1    HACG01049249    CEK96114.1    NCKU01004395    RWS06003.1    RQTK01000357    RUS81065.1    KK852404    KDR24543.1    KK852870    KDR14607.1    ABLF02042206    KK853131    KDR10935.1    MRZV01000940    PIK42365.1    NCKU01012182    RWS00163.1    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975    NCKU01008836    RWS01655.1    RQTK01000625    RUS76894.1    GGMR01016881    MBY29500.1    GGMS01006790    MBY75993.1    RQTK01000685    RUS76136.1    RQTK01000360    RUS81011.1    MRZV01000056    PIK60437.1    GGMR01009131    MBY21750.1    GFAH01000222    JAV48167.1    ODYU01006805    SOQ48998.1    KK852941    KDR13536.1    GDHC01009154    JAQ09475.1    MRZV01002322    PIK33998.1    KF881086    AIJ27485.1    GGMR01012724    MBY25343.1    RQTK01001448    RUS70261.1    GGMS01001437    MBY70640.1    GBRD01015972    GBRD01015971    GBRD01015970    JAG49854.1    KK852511    KDR22315.1    KK853249    KDR09341.1    MRZV01000378    PIK51329.1    KK852843    KDR15156.1    ABLF02028390    QIAP01000240    PYX61602.1    KZ150203    PZC72267.1    GBHO01034897    JAG08707.1    MRZV01000817    PIK43880.1    GBHO01033031    GBHO01015473    GBHO01015472    GBHO01015471    GBHO01015469    GBHO01013134    GBHO01013133    GBHO01013129    GBHO01013128    JAG10573.1    JAG28131.1    JAG28132.1    JAG28133.1    JAG28135.1    JAG30470.1    JAG30471.1    JAG30475.1    JAG30476.1    FJ265559    ADI61827.1    FJ265560    ADI61828.1    FJ265546    ADI61814.1   

Proteomes

UP000218220    UP000078542    UP000053240    UP000036403    UP000007819    UP000007875    + More
UP000008672    UP000007110    UP000271974    UP000285301    UP000027135    UP000230750    UP000247801   

PRIDE

D5LB38    D7F174    D7F175    D7F161   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N
PF05699   Dimer_Tnp_hAT

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036640   ABC1_TM_sf       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR008906   HATC_C_dom       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219        + More
SSF90123   SSF90123       
SSF46689   SSF46689       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A151IIH7   A0A0A9VZT6   A0A146L0Z1   A0A0K8T3U8   + More
A0A0N0PCF3   A0A2S2QJK3   A0A0J7KRQ5   A0A0A9XCF5   A0A2H1V1U0   A0A0J7KZE8   A0A2A4JBK9   A0A2S2QAF2   A0A0A9XXL9   A0A2S2P9Y7   A0A2S2NMQ2   A0A2S2PW26   J9LIJ7   A0A2W1BIM8   A0A2W1BSS7   H2YWZ6   H3B2Y3   A0A2A4JXP9   H2YWZ5   X1D4L4   A0A0B7BVF8   A0A0B7BT11   A0A0B7BUS3   A0A0B7BTW4   W4Y921   A0A0B7BVF2   A0A3S1CD12   A0A0B7BT80   A0A0B7BSZ9   A0A0B7BUR9   A0A0J7KK86   A0A0B7BSC2   A0A2W1BSK1   A0A2S2PJ33   A0A0A9WMP5   A0A0B7BVD9   A0A0B7BVD3   A0A076N1B6   A0A0B7BSB6   A0A3S3P648   A0A3S1A2L0   A0A067RNC1   A0A067QWA3   J9LZK0   A0A067QXS5   A0A2G8K327   A0A3S3NR17   X1WK45   A0A3S3RLW1   A0A3S0ZE77   A0A2S2PJ80   A0A2S2QE77   A0A3S1AZH6   A0A3S1HJZ0   A0A2G8LJK7   A0A2S2NX31   A0A1W7RAL1   A0A2H1W7G4   A0A067QUH9   A0A146LQM2   A0A2G8JE23   A0A076N3Z4   A0A2S2P7C6   A0A3S1AY56   A0A2S2PZ46   A0A0K8S9L8   A0A067RNX5   A0A067QJX4   A0A2G8KTJ4   A0A067QZY5   J9L5F2   A0A2V9X8L4   A0A2W1BGD9   A0A0A9WJT3   A0A2G8K796   A0A0A9WVQ5   D7F174   D7F175   D7F161  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003677   GO:0046983   GO:0006355   GO:0003743  

Length:

111

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0306

Exp number, first 60 AAs:

0.02804

Total prob of N-in:

0.59344

inside

1  -  111

 

 

Pi

151.326549

Theta

140.610015

Tajima's D

0.2395

CLR

0

CSRT

0.43762811859407

Interpretation

Uncertain