Gene

KWMTBOMO04918  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008009

Annotation

PREDICTED:_protein_GDAP2_homolog_isoform_X2_[Papilio_polytes]

Location

Bomo_Chr9(-):1494478-1516559      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.5 PlasmaMembrane   Reliability : 1.24

CDS

ATGGCGATGGACACTATGGCAGTGGAATTGCCAGATTTAACCACAACTGCTCCTCCACCAGCCGCAGAAGAAACAGCCGAAGAAAAATATGAAAGACTGCTGCGGCGTGCCAAGTCCGAAGACCTGAGCGAGGTATCTGGGATCGGATGTCTATATCAGAGCGGCGTGGATCGACTGGGTCGGCCCGTGGTCGTCTTCATCGGGAAATGGTTCCCCATTGGGGACATAGACTTGGAAAAGGCACTCCTATACCTGATCAAACTCCTGGATCCGATCGTGCGCGGTGACTACGTGATCGCGTACTTCCACACGTTGGCCTCGTCGGCGAACCATCCGCCCTTTTCGTGGCTCAAGGAGGTGTACACGGTGCTGCCTTACAAATACAAGAAGAATCTGAAAGCTTTCTACATTGTTCATCCTACGTTCTGGACTAAGATGATGACGTGGTGGTTCACGACGTTCATGGCGCCGGCGATAAAGGCCAAGGTCCACAGTCTGCCCGGCGTCGAGTACCTGTACTCCGTCATGCCGCGCGACCAGCTCGAGGTGCCGGCCTTCGTCACGGAGTACGACATGACGATAAACGGTCTCCACTATTTCCAGCCGGACACGACTAGTACAGTCCTCTGCGAACATTTGTCCCTTCAGTACGACTGA

Protein

MAMDTMAVELPDLTTTAPPPAAEETAEEKYERLLRRAKSEDLSEVSGIGCLYQSGVDRLGRPVVVFIGKWFPIGDIDLEKALLYLIKLLDPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFVTEYDMTINGLHYFQPDTTSTVLCEHLSLQYD

Uniprot

A0A194QCT5   A0A2H1WA41   A0A2A4JFC3   A0A194QLW7   A0A2W1BKA9   A0A1E1WQW5   + More
H9JER2   V5GPW7   A0A1L8DNB5   A0A1L8DN29   Q16U54   T1DEY3   U5EMK6   A7UT51   A0A182VH17   A0A212F2Y8   A0A182NM74   V5I8E5   A0A2M4CU60   A0A2M3YXZ3   A0A182FLE2   A0A182UFW3   A0A1Y1K1C8   A0A1B6DD50   A0A182MRB7   A0A2R7W9B1   A0A182KE55   A0A182WB62   A0A182X4A0   A0A182QP13   A0A182PLD7   A0A182HPA3   A7UT54   A0A182JBZ2   A0A2M3YY16   A0A139WML0   W8AV21   A0A1Q3EUD5   A0A139WMS1   A0A1B6DRA1   A0A1B6CID3   A0A1B6IJ59   A0A0B4KEL9   A0A034VL93   B0XCG5   A0A0P9AF70   W5J4R2   A0A034VL91   A0A1W4VZ92   A0A0P8XPM1   A0A1I8NZD3   A0A0K8V3U3   A0A0A1WWK7   A0A1L8DL02   A0A0J9TVL4   A1Z742   A1Z741   A0A0R1DTA0   A0A1W4WBF8   A0A0J9R7N8   C9QPK4   A0A0A1XLV9   A0A1B6C681   A0A182RA26   T1PA85   A0A0R3NLB4   T1DSB1   A0A1W4VZ85   A0A0R1DM33   A0A0Q5WQ38   D1Z396   A0A0J9R7F9   V9IDS7   A0A0R3NS55   A0A0Q9X766   A0A2J7PVM8   B0WFM7   A0A1B6L219   A0A1A9WJZ3   A0A0Q9X7R8   A0A1A9YN14   A0A1A9V1Z1   A0A1B0B5X4   A0A1L8DWS6   A0A2M4CJ41   A0A2M4A8U5   A0A0A9Z837   A0A1Y1K1D5   A0A2M4BJI9   A0A2M4A8T4   A0A2M3YXX2   R4WIA7   W8BUD7   A0A182LB93   Q5TST8   A0A195DE30   A0A158NYM4   A0A1W4WJA8   A0A195FTZ9   A0A0A9Z0I5  

Pubmed

26354079    28756777    19121390    17510324    24330624    12364791    + More
14747013    17210077    22118469    28004739    18362917    19820115    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25348373    17994087    20920257    23761445    25830018    22936249    26109357    26109356    17550304    15632085    25401762    23691247    20966253    21347285   

EMBL

KQ459185    KPJ03353.1    ODYU01007169    SOQ49712.1    NWSH01001738    PCG70274.1    + More
KQ461198    KPJ05955.1    KZ149993    PZC75512.1    GDQN01002621    GDQN01001655    JAT88433.1    JAT89399.1    BABH01023427    BABH01023428    GALX01004824    JAB63642.1    GFDF01006217    JAV07867.1    GFDF01006216    JAV07868.1    CH477631    EAT38079.1    GALA01000867    JAA93985.1    GANO01004443    JAB55428.1    AAAB01008900    EDO64079.1    EDO64080.1    AGBW02010653    OWR48099.1    GALX01004825    JAB63641.1    GGFL01004200    MBW68378.1    GGFM01000388    MBW21139.1    GEZM01095921    JAV55262.1    GEDC01013700    JAS23598.1    AXCM01003682    AXCM01003683    KK854411    PTY15630.1    AXCN02000946    APCN01002933    EDO64078.1    GGFM01000394    MBW21145.1    KQ971312    KYB29114.1    GAMC01013815    GAMC01013814    JAB92740.1    GFDL01016115    JAV18930.1    KYB29115.1    GEDC01009165    JAS28133.1    GEDC01024203    JAS13095.1    GECU01020749    JAS86957.1    AE013599    AGB93322.1    GAKP01015743    JAC43209.1    DS232691    EDS44795.1    CH902619    KPU76528.1    ADMH02002209    ETN57799.1    GAKP01015748    GAKP01015744    JAC43204.1    KPU76530.1    GDHF01018778    JAI33536.1    GBXI01010848    JAD03444.1    GFDF01006946    JAV07138.1    CM002911    KMY92080.1    BT133240    AAG22307.1    AFB18663.1    AAG22306.1    CM000157    KRJ98313.1    KMY92081.1    BT100118    ACX83598.1    GBXI01002345    JAD11947.1    GEDC01028286    JAS09012.1    KA645647    AFP60276.1    CM000071    KRT01668.1    GAMD01000255    JAB01336.1    KRJ98314.1    CH954177    KQS70920.1    BT120068    ADA69465.1    AFH07946.1    KMY92082.1    JR039002    AEY58479.1    KRT01667.1    CH933808    KRG04143.1    NEVH01020956    PNF20360.1    DS231919    EDS26333.1    GEBQ01022215    JAT17762.1    KRG04141.1    JXJN01008899    GFDF01003201    JAV10883.1    GGFL01001145    MBW65323.1    GGFK01003717    MBW37038.1    GBHO01005634    GBRD01012234    JAG37970.1    JAG53590.1    GEZM01095920    JAV55263.1    GGFJ01004098    MBW53239.1    GGFK01003840    MBW37161.1    GGFM01000344    MBW21095.1    AK417110    BAN20325.1    GAMC01013818    GAMC01013817    GAMC01013816    JAB92739.1    EAL40460.3    EDO64077.1    KQ980953    KYN11148.1    ADTU01004071    ADTU01004072    ADTU01004073    KQ981276    KYN43767.1    GBHO01005640    JAG37964.1   

Proteomes

UP000053268    UP000218220    UP000053240    UP000005204    UP000008820    UP000007062    + More
UP000075903    UP000007151    UP000075884    UP000069272    UP000075902    UP000075883    UP000075881    UP000075920    UP000076407    UP000075886    UP000075885    UP000075840    UP000075880    UP000007266    UP000000803    UP000002320    UP000007801    UP000000673    UP000192221    UP000095300    UP000002282    UP000075900    UP000001819    UP000008711    UP000009192    UP000235965    UP000091820    UP000092443    UP000078200    UP000092460    UP000075882    UP000078492    UP000005205    UP000192223    UP000078541   

PRIDE

H9JER2    A1Z741   

Pfam

PF13716   CRAL_TRIO_2        + More
PF01661   Macro

Interpro

IPR036865   CRAL-TRIO_dom_sf        + More
IPR001251   CRAL-TRIO_dom       
IPR002589   Macro_dom       
IPR035793   Macro_GDAP2       

SUPFAM

SSF52087   SSF52087       

Gene 3D

3.40.525.10    

CDD

cd00170  SEC14
cd02905  Macro_GDAP2_like

ProteinModelPortal

A0A194QCT5   A0A2H1WA41   A0A2A4JFC3   A0A194QLW7   A0A2W1BKA9   A0A1E1WQW5   + More
H9JER2   V5GPW7   A0A1L8DNB5   A0A1L8DN29   Q16U54   T1DEY3   U5EMK6   A7UT51   A0A182VH17   A0A212F2Y8   A0A182NM74   V5I8E5   A0A2M4CU60   A0A2M3YXZ3   A0A182FLE2   A0A182UFW3   A0A1Y1K1C8   A0A1B6DD50   A0A182MRB7   A0A2R7W9B1   A0A182KE55   A0A182WB62   A0A182X4A0   A0A182QP13   A0A182PLD7   A0A182HPA3   A7UT54   A0A182JBZ2   A0A2M3YY16   A0A139WML0   W8AV21   A0A1Q3EUD5   A0A139WMS1   A0A1B6DRA1   A0A1B6CID3   A0A1B6IJ59   A0A0B4KEL9   A0A034VL93   B0XCG5   A0A0P9AF70   W5J4R2   A0A034VL91   A0A1W4VZ92   A0A0P8XPM1   A0A1I8NZD3   A0A0K8V3U3   A0A0A1WWK7   A0A1L8DL02   A0A0J9TVL4   A1Z742   A1Z741   A0A0R1DTA0   A0A1W4WBF8   A0A0J9R7N8   C9QPK4   A0A0A1XLV9   A0A1B6C681   A0A182RA26   T1PA85   A0A0R3NLB4   T1DSB1   A0A1W4VZ85   A0A0R1DM33   A0A0Q5WQ38   D1Z396   A0A0J9R7F9   V9IDS7   A0A0R3NS55   A0A0Q9X766   A0A2J7PVM8   B0WFM7   A0A1B6L219   A0A1A9WJZ3   A0A0Q9X7R8   A0A1A9YN14   A0A1A9V1Z1   A0A1B0B5X4   A0A1L8DWS6   A0A2M4CJ41   A0A2M4A8U5   A0A0A9Z837   A0A1Y1K1D5   A0A2M4BJI9   A0A2M4A8T4   A0A2M3YXX2   R4WIA7   W8BUD7   A0A182LB93   Q5TST8   A0A195DE30   A0A158NYM4   A0A1W4WJA8   A0A195FTZ9   A0A0A9Z0I5  

PDB

6R3V     E-value=1.98275e-10,     Score=155

KEGG

101738783    no KO assigned | (RefSeq) protein GDAP2 homolog

GO

GO:0016021  

Length:

218

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.13142

Exp number, first 60 AAs:

0.00045

Total prob of N-in:

0.35123

outside

1  -  218

 

 

Pi

207.259516

Theta

175.538913

Tajima's D

1.238773

CLR

0.375096

CSRT

0.722713864306785

Interpretation

Uncertain