Gene

KWMTBOMO04915

Pre Gene Modal

BGIBMGA008073

Annotation

PREDICTED:_pre-mRNA-processing_factor_17_[Papilio_machaon]

Location

Bomo_Chr9(+):1452480-1462354      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.27

CDS

ATGCTCAATATAAAAAAATACGGCAGTAGTTCAGAGGATGAAAGTGATGATACAGAAACAAACCAGTTCAGCAATGAAGCTCTCTTGACCCATCTTAAGCCTGTTGATCCGAGTTTGTCCGTGGCCAAGACCATGCAAGTATGTGCTGCTCCAGCTGTGGTGCCTACGAATGAAGATGACACTAGAGTTTTAATACCAGCAAACGCAAAAGAGTTAACACACAATCCAAAGTATGAGGAGCTGTTTGCACCCGCTTTCGGACCAGAGAATCCATTTCAAACACAGCAAATGAAGGCAACGAGAAACATACTATCTGGCTATGTAGAATTGGCACATATTAGCGATTTTCAGTTTGAGAATCAACGAAGAACATTTACGAGTTATGGTTATGCTGTAGATCCTTCTACAAATATTGAGGAGCAAGAAGGAGATGCTATAGTGAAATCTGCTATGATAGACCCTAAAGAAGATACAGAAGGCAAATCAGTTTTTGAAACAATAAAAAAGCGACCCCTAGACAAAAAGAAGAGAACCAAAAATGACAATCCTGAAGACATTAATGGATTTCTAGGACCCTGGGGAGGTTTTGAAGGAGAACAGAGGATAATGAAACCGGAAGGTGATGAAGCAAAAGAATTAGAAGAGATTTTAGCTAAGAGACAGAAGAAAGGAAAAGTTGACGATGATAAACCTTTGGAAGAGAGATCTATATTACACATTGACAAGGTCACCGATTATCAGGGTCGGTCTTGGATCGAGGCGCCCCGAAGCGAAACACAACTGCGAAGCGAGTCACCTCCCGACAAATGTTTCCTACCGAAGGCGCACATATTCACGTGGAAGGGTCACACGAAGGGCGTGGCGGCGGCGCGCTGGTTCCCCTCGACGGCGCATCTCATGCTCTCCGCCGGCATGGACTGCAGGGTCAAGATATGGGAGGTGTACGGTGACCGTCGCTGCATCAGAACGTACTTCGGGCACCGGCAGGCCGTCCGAGACGTCAACTTCAACAATTCCGGGAAACAGTTTCTGTCGGCTGCGTACGACCGGTACATAAAGCTGTGGGACACGGAGTCGGGCGCGTGCGTGTCCCGGTTCACGTCCCGGAAGGTGCCGTACTGCGCCAAGTTCCACCCGGACGCCGACAAGCAACACCTGTTCGTCGCCGGCACCTCCGACAAGAAGATCATATGCTGGGACGTTCGGAGTGGCGAAATAGTCCAAGAGTACGACAGGCATCTCGGTGCGGTCAACACCATCACCTTCGTCGATGAGAACAGGAGATTTGTGACCACATCCGACGACAAGAGTTTGCGGGTCTGGGAGTGGTGA

Protein

MLNIKKYGSSSEDESDDTETNQFSNEALLTHLKPVDPSLSVAKTMQVCAAPAVVPTNEDDTRVLIPANAKELTHNPKYEELFAPAFGPENPFQTQQMKATRNILSGYVELAHISDFQFENQRRTFTSYGYAVDPSTNIEEQEGDAIVKSAMIDPKEDTEGKSVFETIKKRPLDKKKRTKNDNPEDINGFLGPWGGFEGEQRIMKPEGDEAKELEEILAKRQKKGKVDDDKPLEERSILHIDKVTDYQGRSWIEAPRSETQLRSESPPDKCFLPKAHIFTWKGHTKGVAAARWFPSTAHLMLSAGMDCRVKIWEVYGDRRCIRTYFGHRQAVRDVNFNNSGKQFLSAAYDRYIKLWDTESGACVSRFTSRKVPYCAKFHPDADKQHLFVAGTSDKKIICWDVRSGEIVQEYDRHLGAVNTITFVDENRRFVTTSDDKSLRVWEW

Uniprot

H9JEX6   A0A1E1WKN5   A0A194QK57   A0A2A4JPL1   A0A194QIS7   S4PE78   + More
A0A2H1W8I8   A0A0L7RDQ3   A0A067RLH9   A0A2J7R200   A0A3L8DQ43   A0A1B6D906   A0A1W4X2G2   A0A088AN48   A0A1B6LIK0   A0A2A3EE80   A0A026WYQ6   A0A1Y1N8F7   D6X3W5   A0A1I8NFZ0   W8BR92   A0A0K8U4T4   F4X6R4   A0A1B6G8J1   T1P8W5   A0A1I8NU20   A0A0T6AUB0   A0A0A1XM33   A0A151XC95   A0A0M8ZVX3   A0A195E6W1   A0A154PB20   A0A1D2MN60   A0A158NFU1   A0A232FIR0   A0A195B2R1   K7J197   E2BAT0   A0A0L0CF62   Q17DF0   A0A182JCM2   A0A146LQ07   A0A023F4L3   A0A1A9ZZP9   A0A182XNS3   A0A1B0FRH7   A0A182MZ51   A0A1B0DFE9   A0A182QRA8   E0VQD0   A0A146KNH7   A0A182K1F3   A0A182PDW1   B0X9A6   A0A1A9XN20   A0A1A9W6L7   A0A084W7G9   A0A0A9WIM2   A0A182Y0D4   A0A182W6C5   A0A182MKF4   A0A182US87   A0A182LMR7   A0A182TYP3   A0A182I7C9   Q7PWL2   A0A224XDZ3   A0A182RI67   N6TSG8   A0A1Q3F4P4   A0A0J7KS73   A0A226D9P0   A0A2R7X4G2   A0A195CJ25   E2ACA9   U4TXH7   A0A182FNC8   A0A182GEH2   W5J2C1   A0A2M4BI93   A0A310SQC6   A0A1J1J2U2   B4K6L3   A0A0A1XGH6   B4QZD3   A0A195F2I9   B4HM83   B3P7N9   K1QLM6   A0A1W4W2F0   B4PLJ8   Q9VD52   A0A2R2MT95   A0A1L8DG53   B4M0N0   A0A336M1Y9   B3LVL3   B4JRL8   V3ZXV5   A0A1B0GLK6  

Pubmed

19121390    26354079    23622113    24845553    30249741    24508170    + More
28004739    18362917    19820115    25315136    24495485    21719571    25830018    27289101    21347285    28648823    20075255    20798317    26108605    17510324    26823975    25474469    20566863    24438588    25401762    25244985    20966253    12364791    14747013    17210077    23537049    26483478    20920257    23761445    17994087    22992520    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23254933   

EMBL

BABH01023427    GDQN01003628    JAT87426.1    KQ461198    KPJ05958.1    NWSH01000969    + More
PCG73352.1    KQ459185    KPJ03356.1    GAIX01004657    JAA87903.1    ODYU01006897    SOQ49162.1    KQ414613    KOC68925.1    KK852438    KDR23898.1    NEVH01008202    PNF34866.1    QOIP01000005    RLU22353.1    GEDC01015152    JAS22146.1    GEBQ01016466    JAT23511.1    KZ288269    PBC30037.1    KK107063    EZA61175.1    GEZM01010125    JAV94181.1    KQ971379    EEZ97476.1    GAMC01004948    JAC01608.1    GDHF01030984    JAI21330.1    GL888818    EGI57846.1    GECZ01011004    JAS58765.1    KA645134    AFP59763.1    LJIG01022834    KRT78475.1    GBXI01001923    JAD12369.1    KQ982314    KYQ57967.1    KQ435824    KOX72220.1    KQ979568    KYN20831.1    KQ434864    KZC09031.1    LJIJ01000831    ODM94291.1    ADTU01014740    NNAY01000140    OXU30626.1    KQ976662    KYM78489.1    GL446831    EFN87215.1    JRES01000454    KNC31053.1    CH477296    EAT44387.1    GDHC01009364    JAQ09265.1    GBBI01002465    JAC16247.1    CCAG010008016    AJVK01058702    AXCN02002066    DS235418    EEB15586.1    GDHC01021762    GDHC01020253    JAP96866.1    JAP98375.1    DS232529    EDS43038.1    ATLV01021244    KE525315    KFB46163.1    GBHO01041649    GBHO01041644    GBHO01037231    GBRD01001689    GBRD01001688    JAG01955.1    JAG01960.1    JAG06373.1    JAG64132.1    AXCM01002761    APCN01003380    AAAB01008984    EAA14836.2    GFTR01007222    JAW09204.1    APGK01057068    KB741277    ENN71276.1    GFDL01012504    JAV22541.1    LBMM01003834    KMQ93069.1    LNIX01000028    OXA41860.1    KK856889    PTY26531.1    KQ977754    KYN00069.1    GL438491    EFN68899.1    KB631617    ERL84703.1    JXUM01058006    KQ561982    KXJ76989.1    ADMH02002194    ETN57886.1    GGFJ01003638    MBW52779.1    KQ761768    OAD57125.1    CVRI01000067    CRL06687.1    CH933806    EDW16313.1    GBXI01004220    JAD10072.1    CM000364    EDX13869.1    KQ981864    KYN34304.1    CH480815    EDW43131.1    CH954182    EDV54200.1    JH817213    EKC34793.1    CM000160    EDW97947.1    AE014297    AY069490    AAF55949.1    AAL39635.1    GFDF01008770    JAV05314.1    CH940650    EDW67322.2    UFQT01000302    SSX23019.1    CH902617    EDV42583.1    CH916373    EDV94408.1    KB202619    ESO89247.1    AJWK01035621   

Proteomes

UP000005204    UP000053240    UP000218220    UP000053268    UP000053825    UP000027135    + More
UP000235965    UP000279307    UP000192223    UP000005203    UP000242457    UP000053097    UP000007266    UP000095301    UP000007755    UP000095300    UP000075809    UP000053105    UP000078492    UP000076502    UP000094527    UP000005205    UP000215335    UP000078540    UP000002358    UP000008237    UP000037069    UP000008820    UP000075880    UP000092445    UP000076407    UP000092444    UP000075884    UP000092462    UP000075886    UP000009046    UP000075881    UP000075885    UP000002320    UP000092443    UP000091820    UP000030765    UP000076408    UP000075920    UP000075883    UP000075903    UP000075882    UP000075902    UP000075840    UP000007062    UP000075900    UP000019118    UP000036403    UP000198287    UP000078542    UP000000311    UP000030742    UP000069272    UP000069940    UP000249989    UP000000673    UP000183832    UP000009192    UP000000304    UP000078541    UP000001292    UP000008711    UP000005408    UP000192221    UP000002282    UP000000803    UP000085678    UP000008792    UP000007801    UP000001070    UP000030746    UP000092461   

PRIDE

H9JEX6    A0A088AN48    Q9VD52   

Pfam

PF00400   WD40        + More
PF06991   MFAP1

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR032847   PRPF17       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR009730   MFAP1_C       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JEX6   A0A1E1WKN5   A0A194QK57   A0A2A4JPL1   A0A194QIS7   S4PE78   + More
A0A2H1W8I8   A0A0L7RDQ3   A0A067RLH9   A0A2J7R200   A0A3L8DQ43   A0A1B6D906   A0A1W4X2G2   A0A088AN48   A0A1B6LIK0   A0A2A3EE80   A0A026WYQ6   A0A1Y1N8F7   D6X3W5   A0A1I8NFZ0   W8BR92   A0A0K8U4T4   F4X6R4   A0A1B6G8J1   T1P8W5   A0A1I8NU20   A0A0T6AUB0   A0A0A1XM33   A0A151XC95   A0A0M8ZVX3   A0A195E6W1   A0A154PB20   A0A1D2MN60   A0A158NFU1   A0A232FIR0   A0A195B2R1   K7J197   E2BAT0   A0A0L0CF62   Q17DF0   A0A182JCM2   A0A146LQ07   A0A023F4L3   A0A1A9ZZP9   A0A182XNS3   A0A1B0FRH7   A0A182MZ51   A0A1B0DFE9   A0A182QRA8   E0VQD0   A0A146KNH7   A0A182K1F3   A0A182PDW1   B0X9A6   A0A1A9XN20   A0A1A9W6L7   A0A084W7G9   A0A0A9WIM2   A0A182Y0D4   A0A182W6C5   A0A182MKF4   A0A182US87   A0A182LMR7   A0A182TYP3   A0A182I7C9   Q7PWL2   A0A224XDZ3   A0A182RI67   N6TSG8   A0A1Q3F4P4   A0A0J7KS73   A0A226D9P0   A0A2R7X4G2   A0A195CJ25   E2ACA9   U4TXH7   A0A182FNC8   A0A182GEH2   W5J2C1   A0A2M4BI93   A0A310SQC6   A0A1J1J2U2   B4K6L3   A0A0A1XGH6   B4QZD3   A0A195F2I9   B4HM83   B3P7N9   K1QLM6   A0A1W4W2F0   B4PLJ8   Q9VD52   A0A2R2MT95   A0A1L8DG53   B4M0N0   A0A336M1Y9   B3LVL3   B4JRL8   V3ZXV5   A0A1B0GLK6  

PDB

6ID1     E-value=4.47972e-142,     Score=1294

KEGG

101738430    K12816 pre-mRNA-processing factor 17 | (RefSeq) pre-mRNA-processing factor 17

GO

GO:0071013   GO:0000398   GO:0016021   GO:0003723   GO:0071011   GO:0005681   GO:0005515   GO:0033180   GO:0046961   GO:0033179   GO:0015074   GO:0007166   GO:0006032   GO:0016742   GO:0003824  

PANTHER

PTHR43979  

Length:

443

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00186

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00655

outside

1  -  443

 

 

Pi

206.37797

Theta

184.605996

Tajima's D

0.315238

CLR

132.969606

CSRT

0.460876956152192

Interpretation

Uncertain