Gene

KWMTBOMO04912

Pre Gene Modal

BGIBMGA008012

Annotation

PREDICTED:_tigger_transposable_element-derived_protein_4-like_[Papilio_machaon]

Location

Bomo_Chr9(-):1420690-1423409      View in EpiBrowser

Full name

Tigger transposable element-derived protein 4      

Location in the cell

Nuclear   Reliability : 3.353

CDS

ATGTCACAAAGAAAAAGAAAACAAATTAATATTGAGGAAAAATCGCGTATTATAACCAAGCTAGAGAGCGGAATTTCAAACAAAGACTTAGCAAAGGAATATGGTGTATCACACTCGACAATTTCAACCATTTGGAAAGAGCGAGAAAAAATTCAAACGCTTTATGACAATAATTTTTTGAAAATGAAGCGAGCCAGAACAACGAAGCATACGAATATTGAGGAAGCTTTGTTAAAGTGGTTTAAATATCAAAGGGCTAATAATGTGCCAATAAACGGACCGATTCTTCAACAAAAAGCTAACGATTTTGCTCAATGTTTTGGCGAAGATTTTGTTTGCTCGTCTAGTTGGATTCAACGTTTCCGGGCTCGGCACGGTATTGTCGGCGGGAAAATGAGTGGTGAAGCTGCTAGTGTTGATAAGGATACTGTAGAAGAATGGATGAAGCAAAAGTGGCCTACATTATTCGAAGGCTACGGACCAGATGAAATTTTTAACGCAGATGAAACTGGACTTTTTTACAATATGACACCAGACAAGACTTTAAAGTTCAAAGGAGAGAATTGTTTGGGAGGAAAAATGTCTAAAACGAGATTAACGATCATGGTTGCAGCAAATATGACAGGATCCTGTAAAAGAAAGCTTTTAGTTATTGGCAAATCTAAGAAACCAAGATGCTTTAACATACACTCACTGCCGGTAACGTATGAAAACAATGTGAAGTCATGGATGACATCGGACATTTTTGAGAGATGGTTAAGAAACTGGGACGCTGAATTGAAGGGAAACAAACAGAAAGTTCTACTTTTGGTTGATAACTGTCCTGCTCATTCAGCTGTTACTAATCTAAAATGCATTAAACTTGTGTTCTTACCACCAAATGTTACATCTGTATTGCAACAAGGTGTAATAAGGTGTTTAAAATCTCACTATAGAAGACTGCAAGTGTTAAAGTTATTACAAAACCTTGACAGTAGCGACCAAAAAAGCTTTACGGTTCTTGATGCCATCTTGATGATATCAGAAGCATGGGAAAACGTTTCACAAAACACTATAGCTAACTGCTTTAAGCATGCTGGTTTTAAAGACCTCTTAACAATAACCTCAGATGATGTGACTGATGATGATGGAGAGGACAATATTTCTGTTGCTCAATTAGCCCAAAATTTACGACCTGCTTTATCTATTACTGAAGCAGCAGAGTTCATTGATGTAGATAACTCTATTGCAATTTGCGCACGAGCTACAGAAGATGATATTATACGAAATGTTAAAGAAGAAGATGACGAACAGGAAGACTCTGAAGAACAATTTACTGTACCAACTTTGAATGATGGTATCAATGCTGTTAGTGTATTAAGAAAGATTGTTCTTTTTAATGAACACATCCACAGCAATTATGACGATACGTTAATTAAAATCCAACGTGAATTACAAAATATCTATGCACAGCAGAAGTGTTCCAAACAGACCAAAATTGCAGATTTTATGCTCACAGAAAAATAG

Protein

MSQRKRKQINIEEKSRIITKLESGISNKDLAKEYGVSHSTISTIWKEREKIQTLYDNNFLKMKRARTTKHTNIEEALLKWFKYQRANNVPINGPILQQKANDFAQCFGEDFVCSSSWIQRFRARHGIVGGKMSGEAASVDKDTVEEWMKQKWPTLFEGYGPDEIFNADETGLFYNMTPDKTLKFKGENCLGGKMSKTRLTIMVAANMTGSCKRKLLVIGKSKKPRCFNIHSLPVTYENNVKSWMTSDIFERWLRNWDAELKGNKQKVLLLVDNCPAHSAVTNLKCIKLVFLPPNVTSVLQQGVIRCLKSHYRRLQVLKLLQNLDSSDQKSFTVLDAILMISEAWENVSQNTIANCFKHAGFKDLLTITSDDVTDDDGEDNISVAQLAQNLRPALSITEAAEFIDVDNSIAICARATEDDIIRNVKEEDDEQEDSEEQFTVPTLNDGINAVSVLRKIVLFNEHIHSNYDDTLIKIQRELQNIYAQQKCSKQTKIADFMLTEK

Similarity

Belongs to the tigger transposable element derived protein family.

Keywords

Complete proteome   DNA-binding   Nucleus   Reference proteome   Polymorphism  

Feature

chain  Tigger transposable element-derived protein 4
sequence variant  In dbSNP:rs34432931.

Uniprot

H9JER5   H9JRJ8   A0A2H1VZ78   V5GY20   A0A2S2PFN4   A0A0Q9XFU2   + More
A0A1W4VG27   A0A1Y1KNY0   A0A1B6C4M0   A0A1B6DBA1   A0A2S2NVD0   A0A2R5L8Q6   A0A1E1XPV2   A0A1E1XTJ5   X1WUV9   L7MCT9   A0A2H1W5C7   A0A1E1X330   J9K6L9   A0A091SZA7   A0A2Y9DPY4   A0A1U7RJI3   L7MLD5   A0A151PB98   L7MMS1   A0A087V7Q2   A0A093HII8   E2R100   A0A2K5C1T7   A0A2U3W395   H0WRQ3   A0A1E1X4M9   U6CPF6   A0A1E1X5S0   I3MYQ0   A0A093RJY8   A0A131XG10   F7HQK9   A0A1U7TKK1   A0A1D2M783   A0A3Q7P972   A0A023GKV9   D2GXS4   A0A3Q7U3A8   S9XPQ8   G1MLG7   A0A2L2YIB8   L7MD92   Q8BUZ3   A0A0P6JFM7   A0A3Q7WY04   A0A2Y9HZ54   M3Z8F2   A0A1E1X3M9   A0A0A0B4C5   A0A2S2PW91   A0A384BN56   A0A0B7BST1   L8HVP8   A0A3P4S0X8   A0A1E1X313   A0A2Y9KLY4   A0A224Z9W5   Q8IY51   A0A2K6SCY7   A0A091PBU6   A0A147BJ72   A0A2R5LAU9   A0A2U3X756   M3WPY0   A0A091TET2   A0A2H4EU06   G3W0T3   A0A1S3A562   F7AYM3   A0A091HY17   A0A3Q0GP10   A0A1U7QVT0   A0A2K6JVL4   A0A2K6NL06   A0A2I0UG90   A0A093CLR3   A0A131XNC6   A0A087U5W6   A0A0D9S9S7   A0A1S3GAB8   A0A091PCQ9   G3R842   H2QQA3   L7MLS7   A0A2K5L488   A0A096MMG9   A0A087UK97   A0A2K5XFU9   W5Q0B7   G1R1S0   G7P6F2  

Pubmed

19121390    17994087    28004739    29209593    25576852    28503490    + More
22293439    16341006    28049606    27289101    20010809    23149746    26561354    16141072    24813606    22751099    28797301    15815621    15489334    14702039    29652888    17975172    21709235    19892987    25362486    22398555    16136131    20809919    22002653   

EMBL

BABH01023425    BABH01031799    ODYU01005364    SOQ46128.1    GALX01001744    JAB66722.1    + More
GGMR01015638    MBY28257.1    CH933812    KRG07157.1    GEZM01080219    GEZM01080218    JAV62288.1    GEDC01028852    JAS08446.1    GEDC01014329    JAS22969.1    GGMR01008478    MBY21097.1    GGLE01001733    MBY05859.1    GFAA01002355    JAU01080.1    GFAA01000830    JAU02605.1    ABLF02034653    GACK01004010    JAA61024.1    ODYU01006373    SOQ48166.1    GFAC01005544    JAT93644.1    ABLF02022231    KK492952    KFQ64083.1    GACK01000229    JAA64805.1    AKHW03000533    KYO46313.1    GACK01000230    JAA64804.1    KL483028    KFO08644.1    KL206458    KFV82448.1    AAEX03010049    AAQR03075137    GFAC01005197    JAT93991.1    HAAF01000614    CCP72440.1    GFAC01004569    JAT94619.1    AGTP01094548    KL225334    KFW71199.1    GEFH01002147    JAP66434.1    LJIJ01003184    ODM88784.1    GBBM01000897    JAC34521.1    GL192370    EFB26546.1    KB017510    EPY77151.1    ACTA01040196    IAAA01026926    LAA07859.1    GACK01003875    JAA61159.1    AK081667    GEBF01002134    JAO01499.1    AEYP01045400    GFAC01005547    JAT93641.1    KL884776    KGM00171.1    GGMS01000470    MBY69673.1    HACG01049168    HACG01049169    HACG01049170    HACG01049171    CEK96033.1    CEK96034.1    CEK96035.1    CEK96036.1    JH882892    ELR47958.1    CYRY02045419    VCX40834.1    GFAC01005556    JAT93632.1    GFPF01012384    MAA23530.1    AC106882    BC037869    AK058054    KK670541    KFQ04678.1    GEGO01004586    JAR90818.1    GGLE01002517    MBY06643.1    AANG04001605    KK450013    KFQ73044.1    KU056810    AOE48154.1    AEFK01215205    KL217999    KFP00837.1    KZ505784    PKU45052.1    KL466368    KFV16805.1    GEFH01000749    JAP67832.1    KK118338    KFM72755.1    AQIB01017567    KL384076    KFP89305.1    CABD030034291    AACZ04005051    GACK01000074    JAA64960.1    AHZZ02028028    KK120216    KFM77786.1    AMGL01037157    ADFV01178485    AQIA01056733    CM001280    EHH54020.1   

Proteomes

UP000005204    UP000009192    UP000192221    UP000007819    UP000248480    UP000189705    + More
UP000050525    UP000053584    UP000002254    UP000233020    UP000245340    UP000005225    UP000005215    UP000054081    UP000008225    UP000189704    UP000094527    UP000286641    UP000286640    UP000008912    UP000000589    UP000286642    UP000248481    UP000000715    UP000053858    UP000261680    UP000291021    UP000248482    UP000005640    UP000233220    UP000245341    UP000011712    UP000007648    UP000079721    UP000002281    UP000054308    UP000189706    UP000233180    UP000233200    UP000054359    UP000029965    UP000081671    UP000001519    UP000002277    UP000233060    UP000028761    UP000233140    UP000002356    UP000001073    UP000009130    UP000233100   

PRIDE

H9JER5    H9JRJ8    Q8BUZ3    Q8IY51   

Pfam

PF03221   HTH_Tnp_Tc5        + More
PF03184   DDE_1
PF04218   CENP-B_N
PF01388   ARID
PF08449   UAA
PF09026   CENP-B_dimeris

Interpro

IPR004875   DDE_SF_endonuclease_dom        + More
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR036431   ARID_dom_sf       
IPR001606   ARID_dom       
IPR036388   WH-like_DNA-bd_sf       
IPR011991   ArsR-like_HTH       
IPR013657   UAA       
IPR015115   CenpB_C       
IPR033062   CENP-B       

SUPFAM

SSF46689   SSF46689        + More
SSF46774   SSF46774       

Gene 3D

1.10.150.60     1.10.10.10    

CDD

cd00090  HTH_ARSR

ProteinModelPortal

H9JER5   H9JRJ8   A0A2H1VZ78   V5GY20   A0A2S2PFN4   A0A0Q9XFU2   + More
A0A1W4VG27   A0A1Y1KNY0   A0A1B6C4M0   A0A1B6DBA1   A0A2S2NVD0   A0A2R5L8Q6   A0A1E1XPV2   A0A1E1XTJ5   X1WUV9   L7MCT9   A0A2H1W5C7   A0A1E1X330   J9K6L9   A0A091SZA7   A0A2Y9DPY4   A0A1U7RJI3   L7MLD5   A0A151PB98   L7MMS1   A0A087V7Q2   A0A093HII8   E2R100   A0A2K5C1T7   A0A2U3W395   H0WRQ3   A0A1E1X4M9   U6CPF6   A0A1E1X5S0   I3MYQ0   A0A093RJY8   A0A131XG10   F7HQK9   A0A1U7TKK1   A0A1D2M783   A0A3Q7P972   A0A023GKV9   D2GXS4   A0A3Q7U3A8   S9XPQ8   G1MLG7   A0A2L2YIB8   L7MD92   Q8BUZ3   A0A0P6JFM7   A0A3Q7WY04   A0A2Y9HZ54   M3Z8F2   A0A1E1X3M9   A0A0A0B4C5   A0A2S2PW91   A0A384BN56   A0A0B7BST1   L8HVP8   A0A3P4S0X8   A0A1E1X313   A0A2Y9KLY4   A0A224Z9W5   Q8IY51   A0A2K6SCY7   A0A091PBU6   A0A147BJ72   A0A2R5LAU9   A0A2U3X756   M3WPY0   A0A091TET2   A0A2H4EU06   G3W0T3   A0A1S3A562   F7AYM3   A0A091HY17   A0A3Q0GP10   A0A1U7QVT0   A0A2K6JVL4   A0A2K6NL06   A0A2I0UG90   A0A093CLR3   A0A131XNC6   A0A087U5W6   A0A0D9S9S7   A0A1S3GAB8   A0A091PCQ9   G3R842   H2QQA3   L7MLS7   A0A2K5L488   A0A096MMG9   A0A087UK97   A0A2K5XFU9   W5Q0B7   G1R1S0   G7P6F2  

PDB

1HLV     E-value=1.15631e-11,     Score=170

KEGG

NA   

GO

GO:0005634   GO:0003677   GO:0016021   GO:0055085   GO:0003682   GO:0000775   GO:0003676   GO:0033179   GO:0015074   GO:0007166   GO:0006032   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR19303:SF25  

Subcellular location

Nucleus  

Length:

501

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00859

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03696

outside

1  -  501

 

 

Pi

227.143488

Theta

174.496452

Tajima's D

1.107263

CLR

0.404399

CSRT

0.690615469226539

Interpretation

Uncertain