Gene

KWMTBOMO04909

Pre Gene Modal

BGIBMGA008069

Annotation

PREDICTED:_TBC1_domain_family_member_5_[Bombyx_mori]

Location

Bomo_Chr9(+):1385310-1395258      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.919 Nuclear   Reliability : 1.661

CDS

ATGGACCAGAATTCAGCGAAAACACCTAGTCTACCAAACAATGGTACGGAAGGGATTGATTTCGACCTGGAACAGCCGCTGTGGTGTTTGGAGGAGCTTCAGAAAGCGGCTATTGAGCATCGACTCCTGCGTCCACGGAGCCTGGCCTGGGCTATTATGCTGAACGCTTTGCCACCTCCGAATGCGGACATCGTTTCTCGCCTAAAGTGCCATAGGAACTTCTACGATGACTTGAAAGTGAAATTATCGATGGATCCGAGAGCCGTGATTGGGGATGACCCACTCTCTCAGAATGATAAGAGCGCTTGGCGACAGCACTTTTGCGACAACGAACTCAAAACTGTGATACTCCAAGACGTCGTGAGGACGTTTCCTGATGAGCTTTACTTTAGGGAGAAAGACGTTCAGGATCTGATGGTCCGAGTCCTCTTCTATTGGGCGCGTTCGCACTCGCACGTGGGCTACAGACAGGGCATGCACGAGATACTGGCTCCGCTACTCTTCGAGCTGTATTTGGATAGGAAGTTCGCGCCCCGGGCCATCAGTGACAAATTAAAAATTATACTCGACGAAGATTATTTGGAGCACGACAGCTACATGCTGTTCAACACCGTGATGCAGGGACTGGAGAGGTTTTACGTGACGGGCGACGTCGTGCCCTCGCCCTCCGGTAGGATGCCCTCTTCCAGGATGATCCACAATCCAAACGAAGTGGTGAGATACCTGGAGAAGGTCAAGGAGGACTACTTGTTCCCGCTGGACCCCGAGCTCGCCACGCACCTGACCAACTTCAACATTTCCTTGGAGCTCTTCGGAATGTGA

Protein

MDQNSAKTPSLPNNGTEGIDFDLEQPLWCLEELQKAAIEHRLLRPRSLAWAIMLNALPPPNADIVSRLKCHRNFYDDLKVKLSMDPRAVIGDDPLSQNDKSAWRQHFCDNELKTVILQDVVRTFPDELYFREKDVQDLMVRVLFYWARSHSHVGYRQGMHEILAPLLFELYLDRKFAPRAISDKLKIILDEDYLEHDSYMLFNTVMQGLERFYVTGDVVPSPSGRMPSSRMIHNPNEVVRYLEKVKEDYLFPLDPELATHLTNFNISLELFGM

Uniprot

A0A2W1B9Y5   A0A194QD23   A0A1E1WDQ2   A0A212F6L0   A0A1E1WK08   A0A1E1W7C2   + More
J9JR80   A0A2S2R2X9   A0A0P4VI03   A0A023F190   A0A2H8TWH1   E0VZ09   A0A2S2P171   A0A224XBK3   A0A067RW36   A0A1B6HL30   A0A2R7VX54   A0A0V0G8C2   A0A2J7RE47   A0A2C9L1R7   A0A2C9L1K8   A0A224Z5N2   A0A131YT10   A0A224ZBW3   A0A2C9L1Q9   A0A1E1X3F0   A0A023G3B0   A0A0K8SS88   A0A0A9ZED7   A0A1S4FFS5   Q173B2   A0A0P4WL95   A0A1V9XZJ1   A0A0D2X3X9   A0A1E1XM41   W5JQF6   A0A2C9L1R4   R7U6Y5   A0A132A9H4   A0A2M4CMH5   A0A3B0KRL7   A0A1Q3F4H4   A0A1Q3F429   W8BMC7   A0A1Q3F4A3   B4IPE3   A0A3B0KHH7   A0A210PVT8   B4K9T6   A0A336MC51   A0A182FA64   Q299S6   B4G5N6   A0A2C9L1G2   A0A2C9L1V4   W8C6E8   A0A2R5LJS5   B3LX55   A0A293LF98   A0A034VTP3   A0A182UY02   Q7QDJ6   A0A182XK66   B4R1U5   A0A0K8UZC2   A0A293MZ68   A0A182NKV1   A0A182PZC0   A0A131YRW1   A0A182PS53   Q6PGX8   A0A1I8MJC2   A0A1I8MJA9   A0A182TVP1   A0A182IV38   A0A0A1XFL6   A0A182HJS2   A0A1Y9HF71   F1QXM3   A0A1W4UJX8   B3P168   B4PPY5   A0A084VZD4   B4HG96   B4M6D3   A0A182KWZ3   Q9VFX6   A0A1Y2CWE0   B1WC98   A0A182Y4I0   A0A2T7PV67  

Pubmed

28756777    26354079    22118469    27129103    25474469    20566863    + More
24845553    15562597    28797301    26830274    28503490    25401762    26823975    17510324    28327890    29209593    20920257    23761445    23254933    26555130    24495485    17994087    28812685    15632085    25348373    12364791    14747013    17210077    25315136    25830018    23594743    17550304    24438588    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15489334    25244985   

EMBL

KZ150199    PZC72292.1    KQ459185    KPJ03362.1    GDQN01005941    JAT85113.1    + More
AGBW02009996    OWR49375.1    GDQN01003739    JAT87315.1    GDQN01008164    JAT82890.1    ABLF02029495    GGMS01015153    MBY84356.1    GDKW01003221    JAI53374.1    GBBI01003948    JAC14764.1    GFXV01006791    MBW18596.1    DS235848    EEB18615.1    GGMR01010536    MBY23155.1    GFTR01006629    JAW09797.1    KK852427    KDR24084.1    GECU01032328    JAS75378.1    KK854144    PTY12083.1    GECL01001737    JAP04387.1    NEVH01005277    PNF39109.1    GFPF01013409    MAA24555.1    GEDV01007281    JAP81276.1    GFPF01013408    MAA24554.1    GFAC01005411    JAT93777.1    GBBM01006732    JAC28686.1    GBRD01009788    GBRD01009787    JAG56036.1    GBHO01003444    GBHO01000184    GDHC01013088    GDHC01008572    JAG40160.1    JAG43420.1    JAQ05541.1    JAQ10057.1    CH477428    EAT41116.1    GDRN01019106    JAI67819.1    MNPL01001705    OQR78891.1    KE346368    KJE95089.1    GFAA01003106    JAU00329.1    ADMH02000806    ETN64974.1    AMQN01008986    KB304341    ELU02125.1    JXLN01011622    KPM07519.1    GGFL01002348    MBW66526.1    OUUW01000013    SPP87891.1    GFDL01012579    JAV22466.1    GFDL01012731    JAV22314.1    GAMC01004305    JAC02251.1    GFDL01012696    JAV22349.1    CH680252    EDW53727.1    SPP87890.1    NEDP02005459    OWF40600.1    CH933806    EDW14561.2    UFQT01000635    SSX25967.1    CM000070    EAL27625.2    CH479179    EDW24902.1    GAMC01004304    JAC02252.1    GGLE01005549    MBY09675.1    CH902617    EDV41655.1    GFWV01002444    MAA27174.1    GAKP01013465    JAC45487.1    AAAB01008851    EAA07272.5    EGK96624.1    CM000364    EDX13097.1    GDHF01020305    JAI32009.1    GFWV01021375    MAA46103.1    AXCN02000306    GEDV01007282    JAP81275.1    BC056792    AAH56792.1    GBXI01005014    JAD09278.1    APCN01002207    BX927400    CH954181    EDV49257.1    CM000160    EDW97212.1    ATLV01018745    KE525248    KFB43328.1    CH480815    EDW42344.1    CH940652    EDW59209.2    AE014297    BT023950    AAF54919.1    ABB36454.1    MCGO01000005    ORY51340.1    BC162056    AAI62056.1    PZQS01000002    PVD37311.1   

Proteomes

UP000053268    UP000007151    UP000007819    UP000009046    UP000027135    UP000235965    + More
UP000076420    UP000008820    UP000192247    UP000008743    UP000000673    UP000014760    UP000268350    UP000001292    UP000242188    UP000009192    UP000069272    UP000001819    UP000008744    UP000007801    UP000075903    UP000007062    UP000076407    UP000000304    UP000075884    UP000075886    UP000075885    UP000095301    UP000075902    UP000075880    UP000075840    UP000075900    UP000000437    UP000192221    UP000008711    UP000002282    UP000030765    UP000008792    UP000075882    UP000000803    UP000193642    UP000076408    UP000245119   

PRIDE

Q9VFX6   

Pfam

PF00566   RabGAP-TBC        + More
PF02996   Prefoldin

Interpro

IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       
IPR009053   Prefoldin       
IPR011599   PFD_alpha_archaea       
IPR004127   Prefoldin_subunit_alpha       

SUPFAM

SSF47923   SSF47923       

Gene 3D

1.10.287.370    

ProteinModelPortal

A0A2W1B9Y5   A0A194QD23   A0A1E1WDQ2   A0A212F6L0   A0A1E1WK08   A0A1E1W7C2   + More
J9JR80   A0A2S2R2X9   A0A0P4VI03   A0A023F190   A0A2H8TWH1   E0VZ09   A0A2S2P171   A0A224XBK3   A0A067RW36   A0A1B6HL30   A0A2R7VX54   A0A0V0G8C2   A0A2J7RE47   A0A2C9L1R7   A0A2C9L1K8   A0A224Z5N2   A0A131YT10   A0A224ZBW3   A0A2C9L1Q9   A0A1E1X3F0   A0A023G3B0   A0A0K8SS88   A0A0A9ZED7   A0A1S4FFS5   Q173B2   A0A0P4WL95   A0A1V9XZJ1   A0A0D2X3X9   A0A1E1XM41   W5JQF6   A0A2C9L1R4   R7U6Y5   A0A132A9H4   A0A2M4CMH5   A0A3B0KRL7   A0A1Q3F4H4   A0A1Q3F429   W8BMC7   A0A1Q3F4A3   B4IPE3   A0A3B0KHH7   A0A210PVT8   B4K9T6   A0A336MC51   A0A182FA64   Q299S6   B4G5N6   A0A2C9L1G2   A0A2C9L1V4   W8C6E8   A0A2R5LJS5   B3LX55   A0A293LF98   A0A034VTP3   A0A182UY02   Q7QDJ6   A0A182XK66   B4R1U5   A0A0K8UZC2   A0A293MZ68   A0A182NKV1   A0A182PZC0   A0A131YRW1   A0A182PS53   Q6PGX8   A0A1I8MJC2   A0A1I8MJA9   A0A182TVP1   A0A182IV38   A0A0A1XFL6   A0A182HJS2   A0A1Y9HF71   F1QXM3   A0A1W4UJX8   B3P168   B4PPY5   A0A084VZD4   B4HG96   B4M6D3   A0A182KWZ3   Q9VFX6   A0A1Y2CWE0   B1WC98   A0A182Y4I0   A0A2T7PV67  

PDB

2G77     E-value=1.40531e-05,     Score=114

KEGG

101744825    K18469 TBC1 domain family member 5 | (RefSeq) TBC1 domain family member 5

GO

GO:0017137   GO:0005794   GO:0006457   GO:0051082   GO:0016272   GO:0016021   GO:0090630   GO:0005623   GO:0005096   GO:0006886   GO:0043087  

Length:

273

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0214599999999999

Exp number, first 60 AAs:

0.01334

Total prob of N-in:

0.08166

outside

1  -  273

 

 

Pi

2.445897

Theta

54.57378

Tajima's D

-1.998556

CLR

2.421003

CSRT

0.0135993200339983

Interpretation

Possibly Positive selection