Gene

KWMTBOMO04902

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Chr9(-):1273789-1277739      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.453

CDS

ATGTCGTCAAATAATACGATGGCACTGATTGAAAAGCTGACTGGAAGGGAAAACTATCCTACGTGGAGATTTGCAGTGCAAACATATCTCGAACACGAAGAATTATGGAGTTGTGTCACCGCGAAAGACAATGAAACAATTGATCCCAAACTTGATACAAAAGCTAAGTCAAAAATTATCTTATTAGTACATCCAATCAATTATGTACATATACAAGAAGCCAAAACAGCCAAGGAAGTTTGGAATAATTTAGCCAAAGCTTTCGATGACACGGGTTTGACACGCCGAGTGGGTCTGTTGAGAGATCTTATCAATACCACGCTTGAAAATTGTCTGAACATAGAAGATTATGTTAACAAGATTATGACCGCTGCCCATAAGTTAAGGAACATTGGTTTTAAAGTCGATGATGAATGGCTCGGGACTTTATTACTTGCTGGATTACCAGATATATATCAACCAATGATCATGGCACTAGAAAGTTCAGGTCTGACAATAACGGCTGATTCAGTGAAGACTAAGCTTCTACAAGATGTGAGAAACTCAGAGTCCAGTGCATTGTATGTCAGAAGCAAGGGGAATCAATTTGTCAAACAAACTCAAGATAAAACTAAAACTGGTAAAGGTCCAAGGTGCTATGTGTGTAATAAATATGGGCACATAAGTAAAAATTGCCGAAATAAAAAAAAGGAACAGAAGTCTAATGAGAACACAGATTCTGGTTATGTCGCTGTGTTATCTGCAACAATGAACAACGACAATAATTGGTACATTGATTCTGGAGCGTCAATGCATATGACAATGAATCGTGACTGGCTATATGATGAAATTACACCTCCAATTTCCACAATAAAAGTAGCTAATGACAAAAAGTTAGTTGTAAAAGCTTGTGGAAAGGTAAATCTTAATGTTGTCAATATGCAAGGCCAGTTAGAAACTATCAAGGTGCAGAATGTTCTCTATGTTCCTGAGTTGGCTACTAATCTTCTCTCTGTAAGTCAAATAATAAATAGTGGCTGTCAAGTACAATTTGACAAACAAGGATGTAAAATCTTAAATAAAACAAACAAGCAAGTTGCAGCTGCTAAAATGATAAATAATATGTACAGGCTAGTTACACACAGTGTTCCAGCATACACATCAGCTTCAACAGAGAATGATTCTTATTTATGGCATCAGAGAATGGCACATTTAAATTTTGAAGATTTAAATAAACTATCAGAAAGTGCAGGAGTCACATTAGAAAATACAGACAAAGTGATATGTATCTCATGTTTGGAAGGGAAGCAGACAAGATTTCCATTCCCTTCAGAAGGTTCCAGAGCACAAGCAAAGCTAGAACTTATTCACTCTGATGTCTGTGGTCCAATGGAGACACTGTCTATGGGAGGAGCACGCTACTTTCTTACATTCATCGATGATTTTACGAGGAAAGTATTTGTATATGTTTTAAAAAGAAGATCTGAAGTATTCCAAAAATTTCAAGAATTTAAAGTATTAGTTGAAAATCAACTTGATTTGACAATAAAAACTCTCCGCACAGATAATGGGGCTGAGTACTTGAGCAATGAATTTCAAGGTTTTCTTAAGAAATCTGGAATTATACATCAAACCTCCACTCCGTACTCGCCACAACAAAATGGTTTAGCGGAAAGAATGAACCGCACATTATTAGAAAGAGCCAGATGTATGCTTTTAAATGCAAAACTTCAGAAGCATTATTGGGCAGAAGCTGTGTCAACTGCAGCTTACATCACCAATAGATGTCCAACAAGAGCTTTAGCCTTTTTAACACCGGAAGAAATGTGGAGTGGTAAAAAGCCAGATATCACACATATGAAAATTTTTGGCTGTGAAGTGATGGTACATGTTCCTAAAGAAAAAGCTAAGAAGTGGGACTCAAAGACAAATAAATTGATATTCATTGGATATGGTGAACAAACCAAAGGATACAGGCTTTTAGATCCCAAAACAAGAAAAATCATTATAAGCAGAGATGTGATTTTTCTAGAAAGCTCAGTAAAAAGAAATTATGCTGTGGTACCTTTATCAGCATCAGTCCCAAATACCTGTGAAGATACTTCTGTGACTGAAAGTGGCACAACTTTACAAAATGTATCTGAAAGCATTGAAGGTATTAAGGATGAATCCAGTGATGATTTTTACTCAGATGAAGGATCTTTGTATGAACCAGAGATAAATATAGATCACCAGGAAGTAATGTCAAATGTAACTACAAGATCTAAAGCAAGACTGTGTCAAATGCAAGGAAATACCTATATGTGTAGAAAAGAAATTGTAGGACAGGAAAATATCCCAGAAACATATGATGAAGCTATATCTATTGAAAATGCTAATGCTGCAAAATGGAAACAATCAATTGAGGAAGAACTACAAGCACATGCAAAGAATAAAACTTGGCAATTAATTATGAAACCTGAAGGAGTGCGAGTGATTGGCTGTAAATGGGTCTTCAGAATAAAAGATGACCCATCGGGTCCGTGTTTTAAGTCAAGGCTATGTGCTAAAGGCTGTAGCCAGAAACAAGGAATTGATTATAAAGAGATATATTCTCCTACAGTGAGGTATGATTCAGTTCGAGTTTTACTTTCAGAAGCAGCACAACATAATTTGAATATAATTCAGTTTGATGTCAAAACTGCATTCTTATATGGTGACGTCAAAGAAGACATATATATGTTACCGCCTGAAGGTTTGGATACTAATGCAAATATGGTATGTAAACTCAATCGTTCTCTTTATGGCCTTAAACAAGCACCACGGTGTTGGAACCAAAAGTTTGACGCATCACTGAAGAAATTTGGTTTCAACAATAGTCATGCAGATAGGTGTTTGTATATTGGAAAAGTAAACCAGAACAAAGTTTATTTATTATTGTATGTTGATGATGGGCTTATACTTTCTAAGTCAAAGGATTCATTAAATACAGTAATGCAAGAATTAAAGCAAAATTTTGAAATAAAACAGTGTGATTCAAATAATTTTGTAGGATTACAAATTGAAAAATCTGAAAAATATGTCTTTATTCATCAGTCAAAATATATTGAGAGACTATTGTATAAATATAACATGCAAGATGCGAACTGCAATAATATCCCAGTAAGTCCACACACCATTCTGGAGAAAAGCACTGAGTATGTGGACAAGAATATTCCATACCGAGAGGCAGTTGGATCACTAATGCATCTGGCTGTGGTAAGCAGACCTGACATCATGTATGGAGTTAGTCTGGTAAGCAGATATCTTAATTGTTTTGATCACACTCACTGGAATGTAGTCAAGAAAATAATGAAATATTTAAAAGAAACTAAGGACTATGGCATTTGTTACACATCATCTCAGCAAAATAAAATTGAAGCTTATAGTGATGCTGATTTTGCTAAAGATAGTGCCACCCGAAAATCATTAACTGGGTATGTGTTCATTAAAAATGGAGCCGCCATAACATGGGCAACACAACGTCAGCAAAGTGTTGCTTTATCCACCACAGAGGCAGAATTTATGGCTGCTTGCTCTGCGACAAAAGAAGCTTTGTGGTTAAAGAGAATGTTATTAGATATTGGTGAATTTAATCAAGATTCTATATGCTTAAATATGGACAATCAAAGTGCAATCTGTTTAATTAAAAATGTGGACTATCACAAACGCTGTAAGCACATTGATGTTAAATATAATTTTATTAAAGAAAAATATAATGAAAAACATATAGATTTAAATTATGTTTGTACTAAAGAACAATATGCTGATATATTCACTAAAGCTCTGCCTAGGGATAAGTTTCAGTATCTTAGGAGTAAGCTTGGTATTAAGAAATTGAAATAG

Protein

MSSNNTMALIEKLTGRENYPTWRFAVQTYLEHEELWSCVTAKDNETIDPKLDTKAKSKIILLVHPINYVHIQEAKTAKEVWNNLAKAFDDTGLTRRVGLLRDLINTTLENCLNIEDYVNKIMTAAHKLRNIGFKVDDEWLGTLLLAGLPDIYQPMIMALESSGLTITADSVKTKLLQDVRNSESSALYVRSKGNQFVKQTQDKTKTGKGPRCYVCNKYGHISKNCRNKKKEQKSNENTDSGYVAVLSATMNNDNNWYIDSGASMHMTMNRDWLYDEITPPISTIKVANDKKLVVKACGKVNLNVVNMQGQLETIKVQNVLYVPELATNLLSVSQIINSGCQVQFDKQGCKILNKTNKQVAAAKMINNMYRLVTHSVPAYTSASTENDSYLWHQRMAHLNFEDLNKLSESAGVTLENTDKVICISCLEGKQTRFPFPSEGSRAQAKLELIHSDVCGPMETLSMGGARYFLTFIDDFTRKVFVYVLKRRSEVFQKFQEFKVLVENQLDLTIKTLRTDNGAEYLSNEFQGFLKKSGIIHQTSTPYSPQQNGLAERMNRTLLERARCMLLNAKLQKHYWAEAVSTAAYITNRCPTRALAFLTPEEMWSGKKPDITHMKIFGCEVMVHVPKEKAKKWDSKTNKLIFIGYGEQTKGYRLLDPKTRKIIISRDVIFLESSVKRNYAVVPLSASVPNTCEDTSVTESGTTLQNVSESIEGIKDESSDDFYSDEGSLYEPEINIDHQEVMSNVTTRSKARLCQMQGNTYMCRKEIVGQENIPETYDEAISIENANAAKWKQSIEEELQAHAKNKTWQLIMKPEGVRVIGCKWVFRIKDDPSGPCFKSRLCAKGCSQKQGIDYKEIYSPTVRYDSVRVLLSEAAQHNLNIIQFDVKTAFLYGDVKEDIYMLPPEGLDTNANMVCKLNRSLYGLKQAPRCWNQKFDASLKKFGFNNSHADRCLYIGKVNQNKVYLLLYVDDGLILSKSKDSLNTVMQELKQNFEIKQCDSNNFVGLQIEKSEKYVFIHQSKYIERLLYKYNMQDANCNNIPVSPHTILEKSTEYVDKNIPYREAVGSLMHLAVVSRPDIMYGVSLVSRYLNCFDHTHWNVVKKIMKYLKETKDYGICYTSSQQNKIEAYSDADFAKDSATRKSLTGYVFIKNGAAITWATQRQQSVALSTTEAEFMAACSATKEALWLKRMLLDIGEFNQDSICLNMDNQSAICLIKNVDYHKRCKHIDVKYNFIKEKYNEKHIDLNYVCTKEQYADIFTKALPRDKFQYLRSKLGIKKLK

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A194RU38   A0A2A4JRI1   A0A2A4J959   A0A194RJV9   A0A0J7NHJ8   A0A0A1WXQ3   + More
A0A1Y1N932   A0A1W7R6K6   A0A1W7R6J6   A0A0N1ICY1   A0A0V0TUP0   A0A0V1APS7   A0A0A9WRE3   A0A1Y1MYL8   A0A1Y1MYL6   A0A224XA26   A0A1Y1LYU4   A0A0J7K725   A0A0A9WQD4   A0A1B6E9D0   B8YLY5   A0A0V1FKH2   A0A0V1K1Y9   A0A0V1F2E6   A0A151SDY6   B8YLY6   A0A151RJN4   B8YLY3   B8YLY4   A0A151R6U8   A0A151R2G6   A0A151TKT1   H6U1F0   A0A0P6IXK4   A0A2N9FMR2   A0A2N9GLP2   A0A2N9IUS6   Q6BCY1   P10978   H6U1E9   B8YLY7   A0A1Y1N664   A0A0A1XLZ7   A0A2S2NXV8   A0A251TN47   A0A1Y1N3G5   T1PKV2   A0A2M3YZL3   W8BWJ0   A0A034VP70   A0A2M3YZL7   A0A2M4CV35   A0A151RCT9   K7J8U2   B1N668   A0A0V1B5K0   A0A0V1B5A2   A0A2N9GHK9   A0A251TCA0   A0A0V0YNF4   A0A1Y1M571   B6V6Z8   A0A2N9ETC8   A0A151THM1   A0A2N9GY85   A0A2N9JB15   A0A0V0RWJ3   A0A2R6RYD4   A0A2N9FQJ1   A0A1W7R6C8   A0A0J7KI47   A0A2K3NXK0   A0A182GSW5   A0A2N9HLU0   A0A139WFV5   A0A2N9H4V1   A0A1W7R6H7   A0A0V1M1K0   A0A2N9IWX1   A0A1Y1KNM9   A0A2P6SP23   A0A2N9F1W0   Q9ZRJ0   A0A2N9FWL6   A0A2N9GHB5   A0A2N9IGN3   A0A224X581   A0A0A9XD75   A0A0A9XFC8   A5B5N4   A0A0V1GS48   A0A0V0V098   A5AS37   A0A2N9EE21   A0A251T6N3   A0A0V1NJN8   A0A0A1X768   A0A2N9J3Y8   A0A251V331   A0A2N9GA80  

Pubmed

26354079    25830018    28004739    25401762    19656907    22057054    + More
22427337    26999592    15480792    2536143    28538728    24495485    25348373    20075255    18339939    29661190    24500806    28382043    26483478    18362917    19820115    8624443   

EMBL

KQ459875    KPJ19636.1    NWSH01000816    PCG74073.1    NWSH01002292    PCG68657.1    + More
PCG68658.1    KQ460297    KPJ16236.1    LBMM01004924    KMQ91985.1    GBXI01011094    JAD03198.1    GEZM01011857    JAV93390.1    GEHC01000867    JAV46778.1    GEHC01000868    JAV46777.1    KQ460882    KPJ11482.1    JYDJ01000136    KRX42725.1    JYDH01000330    KRY26802.1    GBHO01033235    JAG10369.1    GEZM01017328    JAV90763.1    GEZM01017329    JAV90762.1    GFTR01008662    JAW07764.1    GEZM01045163    GEZM01045162    JAV77888.1    LBMM01012536    KMQ86167.1    GBHO01036544    JAG07060.1    GEDC01002834    JAS34464.1    FJ544854    ACL97385.1    JYDT01000069    KRY86576.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDR01000001    KRY80095.1    KQ483417    KYP53032.1    FJ544856    ACL97386.1    KQ483702    KYP42748.1    FJ544851    ACL97383.1    FJ544853    ACL97384.1    KQ484038    KYP38095.1    KQ484186    KYP36645.1    CM003607    KYP67664.1    JN402333    AFB73912.1    GDUN01000214    JAN95705.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    OIVN01002055    SPD00174.1    OIVN01006261    SPD29147.1    AB162659    BAD34493.1    X13777    JN402332    AFB73911.1    FJ544857    ACL97387.1    GEZM01011859    JAV93384.1    GBXI01002679    JAD11613.1    GGMR01009345    MBY21964.1    CM007899    OTG12557.1    GEZM01013586    JAV92451.1    KA648745    AFP63374.1    GGFM01000953    MBW21704.1    GAMC01008929    JAB97626.1    GAKP01015352    JAC43600.1    GGFM01000952    MBW21703.1    GGFL01004951    MBW69129.1    KQ483843    KYP40337.1    AAZX01000499    EF094939    EF094940    ABO36622.1    ABO36636.1    JYDH01000102    KRY32233.1    KRY32232.1    OIVN01001931    SPC99063.1    CM007900    OTG08534.1    JYDU01000001    KRY01876.1    GEZM01040221    GEZM01040220    JAV80932.1    FJ238509    ACI62137.1    OIVN01000557    SPC82046.1    CM003608    KYP66486.1    OIVN01002516    SPD04274.1    OIVN01006466    SPD33659.1    JYDL01000068    KRX18751.1    NKQK01000002    PSS35035.1    OIVN01001052    SPC89229.1    GEHC01000927    JAV46718.1    LBMM01007046    KMQ90088.1    ASHM01002084    PNY07765.1    JXUM01085595    KQ563513    KXJ73717.1    OIVN01003683    SPD12935.1    KQ971352    KYB26731.1    OIVN01002854    SPD06945.1    GEHC01000879    JAV46766.1    JYDO01000312    KRZ65659.1    OIVN01006239    SPD28653.1    GEZM01078128    GEZM01078127    JAV63002.1    PDCK01000039    PRQ60431.1    OIVN01000486    SPC81000.1    D83003    BAA11674.1    OIVN01001534    SPC95017.1    OIVN01001906    SPC98838.1    OIVN01005591    SPD23209.1    GFTR01008771    JAW07655.1    GBHO01024947    JAG18657.1    GBHO01024950    JAG18654.1    AM447500    CAN74198.1    JYDP01000350    KRZ01021.1    JYDN01000113    KRX56900.1    AM433482    CAN69340.1    OIVN01000036    SPC73022.1    OTG06758.1    JYDM01000185    KRZ84108.1    GBXI01007143    JAD07149.1    OIVN01006353    SPD31284.1    CM007893    OTG30017.1    OIVN01001666    SPC96375.1   

Proteomes

UP000053240    UP000218220    UP000036403    UP000055048    UP000054776    UP000054995    + More
UP000054805    UP000054826    UP000054632    UP000075243    UP000084051    UP000215914    UP000002358    UP000054815    UP000054630    UP000241394    UP000236291    UP000069940    UP000249989    UP000007266    UP000054843    UP000238479    UP000055024    UP000054681    UP000054924   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13961   DUF4219
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF00626   Gelsolin
PF08033   Sec23_BS
PF08534   Redoxin
PF00106   adh_short
PF13696   zf-CCHC_2
PF13855   LRR_8
PF03106   WRKY

Interpro

IPR025314   DUF4219        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR013103   RVT_2       
IPR001584   Integrase_cat-core       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR001878   Znf_CCHC       
IPR039537   Retrotran_Ty1/copia-like       
IPR007123   Gelsolin-like_dom       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR036180   Gelsolin-like_dom_sf       
IPR012990   Sec23_24_beta_S       
IPR036291   NAD(P)-bd_dom_sf       
IPR013740   Redoxin       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036249   Thioredoxin-like_sf       
IPR037944   PRX5-like       
IPR025829   Zn_knuckle_CX2CX3GHX4C       
IPR032675   LRR_dom_sf       
IPR036576   WRKY_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003657   WRKY_dom       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       
SSF82754   SSF82754       
SSF51735   SSF51735       
SSF52833   SSF52833       
SSF118290   SSF118290       

Gene 3D

3.30.420.10     3.40.20.10     2.20.25.80     3.80.10.10    

CDD

cd03013  PRX5_like

ProteinModelPortal

A0A194RU38   A0A2A4JRI1   A0A2A4J959   A0A194RJV9   A0A0J7NHJ8   A0A0A1WXQ3   + More
A0A1Y1N932   A0A1W7R6K6   A0A1W7R6J6   A0A0N1ICY1   A0A0V0TUP0   A0A0V1APS7   A0A0A9WRE3   A0A1Y1MYL8   A0A1Y1MYL6   A0A224XA26   A0A1Y1LYU4   A0A0J7K725   A0A0A9WQD4   A0A1B6E9D0   B8YLY5   A0A0V1FKH2   A0A0V1K1Y9   A0A0V1F2E6   A0A151SDY6   B8YLY6   A0A151RJN4   B8YLY3   B8YLY4   A0A151R6U8   A0A151R2G6   A0A151TKT1   H6U1F0   A0A0P6IXK4   A0A2N9FMR2   A0A2N9GLP2   A0A2N9IUS6   Q6BCY1   P10978   H6U1E9   B8YLY7   A0A1Y1N664   A0A0A1XLZ7   A0A2S2NXV8   A0A251TN47   A0A1Y1N3G5   T1PKV2   A0A2M3YZL3   W8BWJ0   A0A034VP70   A0A2M3YZL7   A0A2M4CV35   A0A151RCT9   K7J8U2   B1N668   A0A0V1B5K0   A0A0V1B5A2   A0A2N9GHK9   A0A251TCA0   A0A0V0YNF4   A0A1Y1M571   B6V6Z8   A0A2N9ETC8   A0A151THM1   A0A2N9GY85   A0A2N9JB15   A0A0V0RWJ3   A0A2R6RYD4   A0A2N9FQJ1   A0A1W7R6C8   A0A0J7KI47   A0A2K3NXK0   A0A182GSW5   A0A2N9HLU0   A0A139WFV5   A0A2N9H4V1   A0A1W7R6H7   A0A0V1M1K0   A0A2N9IWX1   A0A1Y1KNM9   A0A2P6SP23   A0A2N9F1W0   Q9ZRJ0   A0A2N9FWL6   A0A2N9GHB5   A0A2N9IGN3   A0A224X581   A0A0A9XD75   A0A0A9XFC8   A5B5N4   A0A0V1GS48   A0A0V0V098   A5AS37   A0A2N9EE21   A0A251T6N3   A0A0V1NJN8   A0A0A1X768   A0A2N9J3Y8   A0A251V331   A0A2N9GA80  

PDB

5HRR     E-value=4.62195e-05,     Score=117

KEGG

105841774    no KO assigned | (RefSeq) retrovirus-related Pol polyprotein from transposon TNT 1-94

GO

GO:0008270   GO:0003676   GO:0000943   GO:0015074   GO:0003964   GO:0004190   GO:0004519   GO:0004491   GO:0016491   GO:0016021   GO:0003700   GO:0043565  

PANTHER

PTHR11439  

Subcellular location

Nucleus  

Length:

1280

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02335

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00101

outside

1  -  1280

 

 

Pi

19.042027

Theta

35.092752

Tajima's D

0.459473

CLR

48.309433

CSRT

0.507524623768812

Interpretation

Uncertain