SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04880  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008020
Annotation
PREDICTED:_ras_suppressor_protein_1_[Papilio_polytes]
Location in the cell
Cytoplasmic   Reliability : 1.489 Nuclear   Reliability : 1.944
 

Sequence

CDS
ATGAGTCATCAACCCCCAGTATCTTGTATTCCAAACACAGGCAAGATGTCGAAAGCTAAAAAAGTTATTGAAGAAGCCAAAGAAATAAATAATCCGGAAATCGATTTAGTCGACAAAGGAATATCTAGTCTCGAAGAGATTCCAGGCTTATTTTCTCTGGAGAACATCACTCGTCTGTCCCTAAGCCACAACAAAATCTCTGTAGTGCCTGCTGCACTAGCCAACTTGAGCAACTTAGAAATTCTAAACTTGGCCAATAACAACATTCAAGAGCTTCCAGTCAGCTTATCATCACTACCCAAGTTAAGGATCCTCAATGTTTCATTAAACAAACTGTATAACTTGCCAAGAGGCTTTGGTTCCTTCCCTGTGCTAGAGATATTGGATCTAACATACAATAATTTGAATGAAAAAGTATTACCTGGGAACTTCTTTATTATGGACAGTCTCCGTGCTTTGTATTTGGGTGACAATGATTTTGAATTTCTACCACCTGAAATTGGAAATTTGAAGAATCTACAAATTTTGTCGATGCGCGAGAACGACCTGATCGAAGTTCCCCGGGAGCTGGGGCAGCTGGCGCGCCTCCGCGAGCTGCACCTGCAGGGGAACCGCCTCGTCGTGCTGCCGCCGGAGATCGGAACATTGGACCTCGCCAGCAACAAGTCAGTGCTGAGGCTGGAAGGTAACTTCTGGGTTCCGCCCATCGAAGACCAGCTCAAGCTGGGGCCGTCCCACGTGCTGGACTATCTGCGCTCAGAGACCTACAAAGTCCTGTACAGCCGCCACATGTCGGCCAAGCCGCCGCCGCCGCCGCAGACCGTCGACAAGAGCAAGAAGGCGAGTCGCGCCGCCTAA
Protein
MSHQPPVSCIPNTGKMSKAKKVIEEAKEINNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNKISVVPAALANLSNLEILNLANNNIQELPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLKLGPSHVLDYLRSETYKVLYSRHMSAKPPPPPQTVDKSKKASRAA

Summary

EMBL
KY073283    ATQ37759.1    ODYU01004706    SOQ44875.1    KQ461198    KPJ05983.1    + More
BABH01023375    KY073282    ATQ37758.1    KZ149969    PZC76109.1    AGBW02014406    OWR41730.1    GAIX01004231    JAA88329.1    KQ459185    KPJ03381.1    PYGN01001375    PSN35308.1    KK852476    KDR23045.1    NEVH01015820    PNF26634.1    GBYB01010399    JAG80166.1    KK107020    EZA62519.1    GEZM01102787    JAV51792.1    KQ435180    KZC14964.1    KQ977721    KYN00364.1    KQ982335    KYQ57658.1    KQ976580    KYM79954.1    KQ981864    KYN34143.1    ADTU01014960    GEBQ01029265    JAT10712.1    QOIP01000006    RLU21802.1    GL445574    EFN89353.1    KQ979568    KYN21001.1    GL437652    EFN70201.1    KQ435812    KOX72844.1    KQ760559    OAD59795.1    GECU01000514    JAT07193.1    LJIG01022880    KRT78254.1    KQ414915    KOC59459.1    GECZ01007649    JAS62120.1    JH431739    CH954177    EDV58655.1    CH480831    EDW46072.1    CM000361    CM002910    EDX04948.1    KMY90135.1    GGMS01012259    MBY81462.1    AE014134    BT031285    BT088923    AAF53320.2    ABY20526.1    ACT35687.1    AHN54416.1    AHN54417.1    GFXV01003295    MBW15100.1    GEDC01008703    JAS28595.1    KQ971311    EEZ99069.1    GGMR01000410    MBY13029.1    CM000157    EDW88336.2    CH902624    EDV33106.2    CH963920    EDW77535.2    CH379058    EDY69701.1    CH479184    EDW37126.1    OUUW01000006    SPP82313.1    ABLF02035210    ABLF02035217    JRES01000305    KNC32471.1    GAHY01000016    JAA77494.1    GL888341    EGI62462.1    GBXI01006861    GBXI01005428    GBXI01001850    JAD07431.1    JAD08864.1    JAD12442.1    JXJN01013525    AY118581    AAM49950.1    ACPB03018566    GDHF01031961    GDHF01030563    GDHF01029388    GDHF01025297    GDHF01025088    GDHF01022447    GDHF01019048    GDHF01017713    GDHF01007622    GDHF01006894    JAI20353.1    JAI21751.1    JAI22926.1    JAI27017.1    JAI27226.1    JAI29867.1    JAI33266.1    JAI34601.1    JAI44692.1    JAI45420.1    CH940654    EDW57939.2    GFWV01022941    MAA47668.1    GFPF01009492    MAA20638.1    GEDV01010361    JAP78196.1    GEFH01002973    JAP65608.1    GL732598    EFX72571.1    GACK01005677    JAA59357.1    GBIH01001968    JAC92742.1    ABJB010060055    ABJB010346723    ABJB010477874    ABJB010681524    DS627523    EEC01091.1    CH933807    EDW12415.1    GFAC01003751    JAT95437.1    GDIQ01227669    GDIP01090867    LRGB01002912    JAK24056.1    JAM12848.1    KZS05522.1    CCAG010013018    EZ422680    ADD18956.1    GFDF01006605    JAV07479.1    JO842000    AEO33617.1    GAMC01014202    GAMC01014201    GAMC01014200    JAB92353.1    GBHO01009610    GBHO01009609    JAG33994.1    JAG33995.1    GFDG01001975    JAV16824.1    GDKW01001781    JAI54814.1    GFDL01009619    JAV25426.1    KA646403    AFP61032.1    CP012523    ALC39525.1    KB632309    ERL92039.1    GL765108    EFZ16851.1    DS232689    EDS44791.1    GAPW01003258    JAC10340.1    GAPW01003257    JAC10341.1    NEDP02005024    OWF43695.1    JXUM01052821    KQ561750    KXJ77640.1    GFDG01002776    JAV16023.1    GFDG01002775    JAV16024.1    GFDG01002893    JAV15906.1    GAPW01003256    JAC10342.1   
Pfam
PF13855   LRR_8        + More
PF13516   LRR_6
PF12799   LRR_4
PF00560   LRR_1
PF10225   NEMP
Interpro
IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR025875   Leu-rich_rpt_4       
IPR019358   NEMP_fam       
IPR020846   MFS_dom       
Gene 3D
PDB
4U08     E-value=2.78516e-16,     Score=207

Ontologies

Topology

Length:
285
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00254
Exp number, first 60 AAs:
2e-05
Total prob of N-in:
0.02220
outside
1  -  285
 
 

Population Genetic Test Statistics

Pi
32.694034
Theta
41.100034
Tajima's D
-1.341235
CLR
429.008326
CSRT
0.0788960551972401
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 VLPGNFFIMDSLR 100.00 1e-04
26280517 HIYYITGENRDQVANSSFVER 100.00 0.010
25044914 HMQECPK 100.00 0.010
28467696 HMGGVDGICGAYDGSIANER 100.00 0.010
28556443 LGPSHVLDYLR 100.00 0.012
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