Gene

KWMTBOMO04865

Pre Gene Modal

BGIBMGA008027

Annotation

PREDICTED:_sodium-_and_chloride-dependent_glycine_transporter_1-like_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr9(-):475607-500795      View in EpiBrowser

Full name

Transporter      

Location in the cell

PlasmaMembrane   Reliability : 4.915

CDS

ATGGCTAGTGGAGATTACACTATGAATAAGGGAGACGCAAATGGCAGGGCAACACAAAAAACAACCCAAGATGTGACGCCGGACAGGGCGAAGTGGGGCCGACCTCTGGAGTTCATTCTCGCTTGCCTGGGCTACGCCGTTGGCCTCGGAAACGTTTGGAGATTCCCATACTTGTCATATAAAAACGGCGGAGGTGCTTTCCTTCTTCCATTTTTCTTGATGTTGATTTTCATCGGTCTGCCAATCTTCTACTTGGAGCTGTACATAGGGCAGTACACGGGACTGGGTCCTCTAAAGGCATTCAGTGCGATCTCTCCATTCTTCAGTGGGCTCGGCTACTGCACTTTGGTCGTAATCAGCATCATTTCAATTTACTATATGATCATTGTGGCCTGGACGTTGTTCTACACGATTGTTTCTATTGGAGGAAACTTGGGCTGGGGATCTTGTGATAATGACTACAATACTGATTTTTGTTACAGCGGAGAATACGATAGGGTATGTCGTGAGAACAACACAGAGAACTACACGGACCTGACATTTTTTATGAGACAGTGCATGAGCATCGGTGAAATTTGTGAGAGGTCTGGGTTTGAGCCTCTTGATGACAAATATTGTTTAGATGGAAACGATCAAGTGCCTTGGTATTCTAATATCACAAGAGTATTGGCTTCAGAGGAATATTATAACGAGCGTGTATTGGGTCGCGGCGATGCGTCCTGGACTAACTGGGGCACTATACAGTGGCACCTCGTGGGGTGCTTATTTCTCTCTTGGGTCATCGCATTTTTGTGCGTCATAAAAGGTGTCCAGTCAGCAGGAAAAGTTGTGTACTTTACCGCACTGTTCCCCTACGTGATGTTGACGGCTCTGCTCATTCGGGGAGTGACTTTAGAAGGAGCTGTGGACGGAGTTCTATTTTACTTGACGCCGACTTGGTCAACCTTGCTGGAAGCCAAGGTCTGGGGTGACGCCGCATCACAAATATTCTACTCTTTTGGTGTGGCCTGCGGCTCCCTTGTCACTCTGGCTTCTTACAACAACTTCTATAACAACTGCCACTTCGATGCCGTCTTCGTCGCATTTGCCAACTTCTTGACTTCCATTTATGCTGGTTTTGCCATCTTCTCCGTTCTTGGATTTCAAGCTCAGCTCATGGGAGTCAGTGTTGATGACGTAGCAGAACAGGGTCCTGGCCTGGCATTCGTGGCATATCCAGAAGCTATACTGCAGATGCCAGTACCTCAGCTGTGGTCCATATTGTTCTTCTTCATGCTGTTCATTTTGGGTCTTGGCAGTCAGTTCGCTGGTATTGAAGCGATCAACACTGCTATAGTAGACCAGTGGCCGCATCTTAGGAAGAACTACTGGAGGGTAACAGCATTTACGTGTATGATGTGCTTCATATTGGGGATCCCGATGTGCTTCAGCGGAGGCGTCTACTTGTTGACTCTCCTCGATTGGAACACGGCCTCTTGGGCTATCCTTCTCATCGGTATGGCCGAGTGTGTGGCAGTATCTTGGAGTTATGGCATCAATCGCGCAATTAAAGATTTAGCCACGATGGGCATGACCCTAAATAAGTTTCTTCGATTCTACTGGAGGGCCGTTTGGACTGTCATCGTACCATTTGGTAGTATTGGTATTCTAGCTTTCATATTTTCGGACTGGACAGCTCCAGCTTACGAAGACTATGTTTTCCCGTTATTCGCTGATTTGCTGGGCTGGGCGGTTGGGCTGTCCACACTGGTATTATTCCCTGTAGGAGTTGCCTGGGCTATCTACCATGGATACAGAGGTAAGCAGTTGTTTACTCCAACTCCAGAGTGGGGACCGGCTGTGAAAGCACCTCCAGTAGAATCAACGCAGCTTGGAGGGCCTCACGACAATGGGGGCTACGTAATGTGA

Protein

MASGDYTMNKGDANGRATQKTTQDVTPDRAKWGRPLEFILACLGYAVGLGNVWRFPYLSYKNGGGAFLLPFFLMLIFIGLPIFYLELYIGQYTGLGPLKAFSAISPFFSGLGYCTLVVISIISIYYMIIVAWTLFYTIVSIGGNLGWGSCDNDYNTDFCYSGEYDRVCRENNTENYTDLTFFMRQCMSIGEICERSGFEPLDDKYCLDGNDQVPWYSNITRVLASEEYYNERVLGRGDASWTNWGTIQWHLVGCLFLSWVIAFLCVIKGVQSAGKVVYFTALFPYVMLTALLIRGVTLEGAVDGVLFYLTPTWSTLLEAKVWGDAASQIFYSFGVACGSLVTLASYNNFYNNCHFDAVFVAFANFLTSIYAGFAIFSVLGFQAQLMGVSVDDVAEQGPGLAFVAYPEAILQMPVPQLWSILFFFMLFILGLGSQFAGIEAINTAIVDQWPHLRKNYWRVTAFTCMMCFILGIPMCFSGGVYLLTLLDWNTASWAILLIGMAECVAVSWSYGINRAIKDLATMGMTLNKFLRFYWRAVWTVIVPFGSIGILAFIFSDWTAPAYEDYVFPLFADLLGWAVGLSTLVLFPVGVAWAIYHGYRGKQLFTPTPEWGPAVKAPPVESTQLGGPHDNGGYVM

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.

Feature

chain  Transporter

Uniprot

A0A2W1BM12   A0A2H1W6C2   A0A194QM12   A0A1E1WN46   A0A212FEF8   A0A3S2NLB0   + More
A0A194QD56   A0A336LNJ2   A0A1J1IH02   A0A1L8DJN8   D6X3Q2   A0A139WB82   A0A088AFL2   A0A0C9Q1F8   E2AMG9   A0A1J1IQ76   A0A1J1I6T3   A0A1W4X5F8   A0A1J1I5D3   A0A3L8DPQ4   A0A232ELW2   A0A2J7PY70   A0A158NGE2   E2C2H1   U4TUP7   N6T994   A0A1W4WUR5   A0A0M9AAF7   A0A1J1I1C2   A0A195E733   A0A1J1I1A1   A0A151XC17   F4X6Y2   A0A195F1H6   A0A151IQB6   E9J630   A0A195B2Q5   B7S8D1   A0A2P8Z7V4   A0A1B0CZ55   T1FPK8   A0A2P2I1R7   A0A1S3HS51   A0A1S3HPA4   K7IZ11   A0A147BI19   A0A131XN80   A0A0N8CX87   A0A0P6E398   A0A224YZI4   A0A232EZ04   K7INE2   A0A0P5E6X7   A0A0P5D1I1   A0A224Z4S9   A0A1S3JWF3   A0A067RIW3   A0A0P5AGP6   A0A0P5NG54   A0A194PDE3   A0A293MSK5   A0A087UJK6   A0A194RHH9   A0A087SZR9   A0A310S8J2   A0A1E1X7M4   A0A0K2TDT5   A0A0N8B201   A0A0N8A4H0   A0A0P4Z373   A0A0P5T7C5   A0A0P5II29   A0A2R5LA64   A0A0N8CJA7   A0A023GE63   A0A0P4Z993   A0A088AI46   A0A154PE44   A0A1A9WIQ9   A0A0P4Z6R4   A0A087T9D3   Q293F9   H9IUJ7   A0A2P6L6H6   W8B744   E2C7A6   B4MYD7   T1J119   A0A0P6DBF2   A0A1A9Y0M4   A0A212EKK6   A0A0N8EJE9   A0A2T7PMP6   E0VAE8   A0A1I8J6K1   A0A1S3INW9  

Pubmed

28756777    26354079    22118469    18362917    19820115    20798317    + More
30249741    28648823    21347285    23537049    21719571    21282665    29403074    23254933    20075255    29652888    28049606    28797301    24845553    28503490    15632085    17994087    19121390    24495485    20566863    26392545   

EMBL

KZ149969    PZC76099.1    ODYU01006554    SOQ48496.1    KQ461198    KPJ05995.1    + More
GDQN01006111    GDQN01002640    JAT84943.1    JAT88414.1    AGBW02008939    OWR52121.1    RSAL01000048    RVE50485.1    KQ459185    KPJ03392.1    UFQS01000091    UFQT01000091    SSW99174.1    SSX19556.1    CVRI01000051    CRK99499.1    GFDF01007418    JAV06666.1    KQ971377    EEZ97453.2    KYB25101.1    GBYB01007728    JAG77495.1    GL440813    EFN65393.1    CVRI01000057    CRL02312.1    CVRI01000038    CRK94129.1    CRK94126.1    QOIP01000006    RLU22213.1    NNAY01003483    OXU19349.1    NEVH01020850    PNF21288.1    ADTU01014843    GL452135    EFN77827.1    KB631673    ERL85279.1    APGK01047262    KB741077    ENN74298.1    KQ435710    KOX79786.1    CRK94128.1    KQ979568    KYN20906.1    CRK94127.1    KQ982314    KYQ57887.1    GL888818    EGI57914.1    KQ981864    KYN34231.1    KQ976780    KYN08349.1    GL768221    EFZ11724.1    KQ976662    KYM78572.1    EF710645    ACE75156.1    PYGN01000157    PSN52584.1    AJVK01009496    AMQM01000267    KB095811    ESO12934.1    IACF01002309    LAB67968.1    GEGO01004964    JAR90440.1    GEFH01000809    JAP67772.1    GDIP01089951    JAM13764.1    GDIQ01068403    JAN26334.1    GFPF01011892    MAA23038.1    NNAY01001559    OXU23601.1    GDIP01146239    JAJ77163.1    GDIP01162514    JAJ60888.1    GFPF01011893    MAA23039.1    KK852446    KDR23737.1    GDIP01199386    JAJ24016.1    GDIQ01142620    JAL09106.1    KQ459606    KPI91267.1    GFWV01018351    MAA43079.1    KK120113    KFM77545.1    KQ460205    KPJ16894.1    KK112715    KFM58358.1    KQ770716    OAD52621.1    GFAC01003928    JAT95260.1    HACA01006644    CDW24005.1    GDIQ01220651    JAK31074.1    GDIP01183377    JAJ40025.1    GDIP01230369    GDIP01219074    JAJ04328.1    GDIP01136485    JAL67229.1    GDIQ01237904    JAK13821.1    GGLE01002278    MBY06404.1    GDIP01126191    JAL77523.1    GBBM01003289    JAC32129.1    GDIP01219072    JAJ04330.1    KQ434886    KZC10146.1    GDIP01217287    JAJ06115.1    KK114112    KFM61722.1    CM000071    EAL24652.3    BABH01000949    MWRG01001453    PRD34179.1    GAMC01009565    JAB96990.1    GL453340    EFN76219.1    CH963894    EDW77126.2    JH431752    GDIQ01079731    JAN15006.1    AGBW02014254    OWR42013.1    GDIQ01020876    JAN73861.1    PZQS01000003    PVD34691.1    DS235005    EEB10354.1    NIVC01000084    PAA91526.1   

Proteomes

UP000053240    UP000007151    UP000283053    UP000053268    UP000183832    UP000007266    + More
UP000005203    UP000000311    UP000192223    UP000279307    UP000215335    UP000235965    UP000005205    UP000008237    UP000030742    UP000019118    UP000053105    UP000078492    UP000075809    UP000007755    UP000078541    UP000078542    UP000078540    UP000245037    UP000092462    UP000015101    UP000085678    UP000002358    UP000027135    UP000054359    UP000076502    UP000091820    UP000001819    UP000005204    UP000007798    UP000092443    UP000245119    UP000009046    UP000095280    UP000215902   

PRIDE

H9IUJ7   

Pfam

PF00209   SNF        + More
PF01663   Phosphodiest
PF00089   Trypsin

Interpro

IPR000175   Na/ntran_symport        + More
IPR037272   SNS_sf       
IPR017850   Alkaline_phosphatase_core_sf       
IPR002591   Phosphodiest/P_Trfase       
IPR001254   Trypsin_dom       
IPR009003   Peptidase_S1_PA       

SUPFAM

SSF161070   SSF161070        + More
SSF53649   SSF53649       
SSF50494   SSF50494       

Gene 3D

3.40.720.10    

ProteinModelPortal

A0A2W1BM12   A0A2H1W6C2   A0A194QM12   A0A1E1WN46   A0A212FEF8   A0A3S2NLB0   + More
A0A194QD56   A0A336LNJ2   A0A1J1IH02   A0A1L8DJN8   D6X3Q2   A0A139WB82   A0A088AFL2   A0A0C9Q1F8   E2AMG9   A0A1J1IQ76   A0A1J1I6T3   A0A1W4X5F8   A0A1J1I5D3   A0A3L8DPQ4   A0A232ELW2   A0A2J7PY70   A0A158NGE2   E2C2H1   U4TUP7   N6T994   A0A1W4WUR5   A0A0M9AAF7   A0A1J1I1C2   A0A195E733   A0A1J1I1A1   A0A151XC17   F4X6Y2   A0A195F1H6   A0A151IQB6   E9J630   A0A195B2Q5   B7S8D1   A0A2P8Z7V4   A0A1B0CZ55   T1FPK8   A0A2P2I1R7   A0A1S3HS51   A0A1S3HPA4   K7IZ11   A0A147BI19   A0A131XN80   A0A0N8CX87   A0A0P6E398   A0A224YZI4   A0A232EZ04   K7INE2   A0A0P5E6X7   A0A0P5D1I1   A0A224Z4S9   A0A1S3JWF3   A0A067RIW3   A0A0P5AGP6   A0A0P5NG54   A0A194PDE3   A0A293MSK5   A0A087UJK6   A0A194RHH9   A0A087SZR9   A0A310S8J2   A0A1E1X7M4   A0A0K2TDT5   A0A0N8B201   A0A0N8A4H0   A0A0P4Z373   A0A0P5T7C5   A0A0P5II29   A0A2R5LA64   A0A0N8CJA7   A0A023GE63   A0A0P4Z993   A0A088AI46   A0A154PE44   A0A1A9WIQ9   A0A0P4Z6R4   A0A087T9D3   Q293F9   H9IUJ7   A0A2P6L6H6   W8B744   E2C7A6   B4MYD7   T1J119   A0A0P6DBF2   A0A1A9Y0M4   A0A212EKK6   A0A0N8EJE9   A0A2T7PMP6   E0VAE8   A0A1I8J6K1   A0A1S3INW9  

PDB

4XPG     E-value=2.03262e-88,     Score=833

KEGG

101746371    K05038 solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9 | (RefSeq) sodium-

GO

GO:0005328   GO:0016021   GO:0015293   GO:0003824   GO:0005886   GO:0005283   GO:0015187   GO:0015179   GO:0004252   GO:0042752   GO:1903804   GO:0015375   GO:0006836   GO:0005524   GO:0007166   GO:0006032   GO:0005515   GO:0016742  

PANTHER

PTHR11616  

Length:

635

Number of predicted TMHs:

13

Exp number of AAs in TMHs:

285.51289

Exp number, first 60 AAs:

18.89259

Total prob of N-in:

0.21621

POSSIBLE N-term signal

sequence

outside

1  -  35

TMhelix

36  -  58

inside

59  -  62

TMhelix

63  -  85

outside

86  -  99

TMhelix

100  -  122

inside

123  -  128

TMhelix

129  -  148

outside

149  -  246

TMhelix

247  -  269

inside

270  -  275

TMhelix

276  -  298

outside

299  -  327

TMhelix

328  -  350

inside

351  -  356

TMhelix

357  -  379

outside

380  -  415

TMhelix

416  -  438

inside

439  -  457

TMhelix

458  -  480

outside

481  -  489

TMhelix

490  -  512

inside

513  -  531

TMhelix

532  -  554

outside

555  -  573

TMhelix

574  -  596

inside

597  -  635

 

 

Pi

21.213558

Theta

188.546266

Tajima's D

0.640369

CLR

1.070366

CSRT

0.553272336383181

Interpretation

Uncertain