SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04836  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013806
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.514 Nuclear   Reliability : 2.183
 

Sequence

CDS
ATGTACCGTACACCCACGACTTCGGGCGCCTCCAAAAAGCCTACCACTCCCAGCCCTACCACAACCGCAGTGGTGCAGGGTGCGGCAAGGACGTTTATTAAAAGACCAGACATCAAAAGAAGATCACTCGACAATATGGACATTTTCAAAAAGCAGCAACAGAACTATGCTGCGTTGTCGAGTGAACAGCTCCTCCAGGAGATGATGAAGACTTTCGAGGATATACCCTCGAAAGTCCATGAGTACCCTCAGATGAGGAGGGATATAAAGCAGTTCCTGGAGGTGCAGTCAGACAAGGGCATACGTGCAATTTTCGAGCTCAGTAGGCGTATTGAGAGTCTCGAAGCAGGAGCCCCAAAGACAAGGACACCGACAAAAACCTCGTCGTCTGACGGCGCAGATGTCATTTTAAAGAAGCTGGGAGAGGTGGAAAAGGCATTGACTAAACGATTAAACGAGATGGAGCTAAGTCTAAAAACAGACATAATACAACTGAACGACGAAAATGACGGCCGGGGCTCCGACATGATCGACAAGATCATCGACAGGATCGACGAGACCAGAGCTGCCATGGACCAAACGACCGAGGCGGTCGAGAGTCGAACGCACGCTCTCGTCAAGGATCTGGTCGGTGGTCTTGCCGATGATGTCGTCGCAGCAAAACAAGAACTTACGGAGGTCGCAAAAGGACTGGCATGCGATATAAACCTAGCTCCAGTCTCCAAGTCATACGCCAGCGTCACAGCAGCCAAACCCGTCCACCGTCCTGCACTTCATTCGATGGCAGTCACTCTCGAAGGTAGTCAGGAGACAGCTGACGAGGTGCTCGCCAGGGTGAAGAGGGCAGTCGACGCCAGGGGCACTGGACTTAAAATTAACAAGGTACGCAAGGCGAAAAACCAAACTATTATATTGGGTTGCGACACCGAGGAGGAAAGAAAGAAAGTCCAAGAAATAATAGAGAGTCGTGGGGATGGACTGGTAGTAGCGCCCATGAAGAACAAGAGCCCTCTCGTTGTCCTGAAGGATGTTTTCGTGGAAAGTGAAGACGACGATATGATTAAGGCACTCCACGTCCAAAATAAGAACATATTCATGGGCCTACCGGAAGAAGACATGCAAATGGAAATAAAATTTAAAAAACGTACCAGAAACCCAAAGACCGCGCACATCATCTTGCAAGTGAAGCCGAAAGTATGGCAGAGGATGACGGAAGCTGGAGCCCTCTATCTGGACCTTCAAAGGGTCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTCGCATTTGGACATGGTCGTAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAGAAATGCGCAGACTTTATCGCAGGGACCGAACCGCGGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCTGACCATAACGCTTTTAGCGCCGAATGCCCGGTACGAAAAAAGTGGGACTACCTGGCTCGCGCAAATACCACATATGCATGA
Protein
MYRTPTTSGASKKPTTPSPTTTAVVQGAARTFIKRPDIKRRSLDNMDIFKKQQQNYAALSSEQLLQEMMKTFEDIPSKVHEYPQMRRDIKQFLEVQSDKGIRAIFELSRRIESLEAGAPKTRTPTKTSSSDGADVILKKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLVGGLADDVVAAKQELTEVAKGLACDINLAPVSKSYASVTAAKPVHRPALHSMAVTLEGSQETADEVLARVKRAVDARGTGLKINKVRKAKNQTIILGCDTEEERKKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIKALHVQNKNIFMGLPEEDMQMEIKFKKRTRNPKTAHIILQVKPKVWQRMTEAGALYLDLQRVRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPRCCNCSHSGLRKADHNAFSAECPVRKKWDYLARANTTYA

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
SUPFAM
SSF57756   SSF57756        + More
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
507
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00094
Exp number, first 60 AAs:
0.00094
Total prob of N-in:
0.00578
outside
1  -  507
 
 

Population Genetic Test Statistics

Pi
3.830978
Theta
12.788712
Tajima's D
-2.079427
CLR
9.870206
CSRT
0.00874956252187391
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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