Gene

KWMTBOMO04831

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(-):16070911-16072881      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.157 Nuclear   Reliability : 1.008 PlasmaMembrane   Reliability : 1.458

CDS

ATGAAAATCCGACTTATAACTCGTCAATTTAAGCCAAAGACTTGGGCTATTGAGAATGCGTCTGGAGATACTGTCACTGAGATCAAAAAGATTGTTAGCGCTTGGAAAGACTATTGCAAGTCTCTGTTTACTGACACCACAACAAAGATCTCAATGACCTACAGTGAACCCTCGGAACTGGAGCCGATGCCTCTAAAAGACGAGGTGCGAGCAGCTATCAACCACCTTAAACGGAATAAGGCTGTAGGTTTTGATGAAATCCCCATCGAGACAATAAAAGCCATGGGGGAAATCGGAGTGGATATACTGCACATCATCTGTTGTCGAATTTGGGTCACTGGAGTTTGGCCGAGCGATTGGTCACATTCGATATTCATTCCACTTCACAAAAAGGGATCAACGAAGAAGTGCAATAACTACAGACTAATTTCTCTCGTATCCCACGCCAGTAAAGTCATGCTGCACATAATTAACATGAGGCTCCAAGATTACTTGTCCCGAGAGATCGCCCTCGAGCAAGCAGGTTTTGTAAAAGGTCGAGCCACAAGAGAGCAACTACTCGTAATGCGGCAAATTGTAGAAAAGGCCAGAGAATTTAATATTAGCCTATATGTGTGCTTCGTTAATTTCCGAAAGGCTTTTGATACCGTCAAGTGGTGGAAGCTGTGGTTGGTACTGACGGAAATGGGAGTACCGCAACATCTTGTACACACCCTCAGACGTCTGTACGAAGATGGCACGGCCGCTGTTCGTATTGACAGTATTGACTCCGAACGCTTCAGCACACAGGCAGGCGTTAGGCAGGGCGGCATACTATCTCCTCTTTTATTTAATATATACACAGAAGACGAAATCGAGGTGCTTCTTCGCCGGCTGGAGACTACAGCGTTGGATTTTGGACTTGCGATCAATCGTGATAAGACCAAAATGATGATCGTAGATCGTGCTAACATCAACCAACCGGAAGTCCAACATATAGCGGGATGCGAGGTAGTTAATAGCTATGTATATCTAGGCTCCACTATCACCAACGCTGGAGGCTGCGAAGATGAGATCCGAAGACGTTGCGCCGTGACAAGATCCTTAGTTGAGAGGCTAACAAAGATTTGGAGAGACCGCAGAATAACCAAAAACACAAAAGTTCGGTTAATGAGATGCCTGGTCTTTCCAACATTTCTGTATGGGGCTGAGACGTGGACGCTGAGGATGCAAGACCGTCGTAAGATTGACGCACTGAAAATGTGGTATTGGAGACGTCTCCTCAGAATTCCGTGTACCGCGCACCGTACCAACATTTCGATCCTGAAAGAGCTCAACATCAAGGAGAGACTATCGTCAACAGTCCACTTACAAATCCTCAAGTTCTTCGGGCACATCACTCGTAATGAGGACTCTATTGAGCGGTTGGTGGTGCAAGGGAAAGTCGAGGGCAAAAGATCTCGCGGACGATCTCCAACACGATGGACCGACCTCATAAAATCTGTGACTCACTCCAACATAAATGTTTGCTCTCACTCTGCGAAATATCGTGCCACATGGCGTCGCATCGCGAGAGCATCAGTATCGCAGGATCCGACTGATGCATGA

Protein

MKIRLITRQFKPKTWAIENASGDTVTEIKKIVSAWKDYCKSLFTDTTTKISMTYSEPSELEPMPLKDEVRAAINHLKRNKAVGFDEIPIETIKAMGEIGVDILHIICCRIWVTGVWPSDWSHSIFIPLHKKGSTKKCNNYRLISLVSHASKVMLHIINMRLQDYLSREIALEQAGFVKGRATREQLLVMRQIVEKAREFNISLYVCFVNFRKAFDTVKWWKLWLVLTEMGVPQHLVHTLRRLYEDGTAAVRIDSIDSERFSTQAGVRQGGILSPLLFNIYTEDEIEVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTRSLVERLTKIWRDRRITKNTKVRLMRCLVFPTFLYGAETWTLRMQDRRKIDALKMWYWRRLLRIPCTAHRTNISILKELNIKERLSSTVHLQILKFFGHITRNEDSIERLVVQGKVEGKRSRGRSPTRWTDLIKSVTHSNINVCSHSAKYRATWRRIARASVSQDPTDA

Uniprot

D7F162   D7F167   D7F175   D7F163   D7F161   D7F172   + More
D7F168   D5LB39   A0A2W1BGD9   D7F174   A0A3Q1LQN1   A0A2W1BNH4   A0A2H6KKM9   A0A3S3P648   A0A3Q1LR18   A0A3Q1MJK8   A0A3Q1M1T7   A0A3Q1MQ02   A0A3Q1MMW6   A0A3Q1MI63   A0A3Q1ML42   H3B2Y3   A0A3Q1LXQ5   A0A3Q1N3Y9   A0A3Q1MA23   A0A3Q1LUA6   A0A3Q1MXT5   A0A3Q1MDY8   A0A3Q1MLI2   A0A3Q1LWU3   A0A3Q1MTQ8   A0A3Q1NE48   A0A3Q1MCA0   A0A3Q1MWB3   A0A3Q1N1P1   A0A3Q1LNZ2   A0A3Q1MLZ9   A0A3Q1LI58   A0A3Q1LRD2   A0A3Q1LXF5   A0A3Q1MP18   A0A3Q1MLV4   A0A3Q1N2X2   A0A3Q1M8D1   A0A3Q1MZJ0   A0A3Q1M6J7   A0A3Q1LR52   A0A3Q1LIW6   A0A3Q1LWH0   A0A3Q1MGH6   A0A3Q1LX64   A0A3Q1LYT3   A0A3Q1MNB9   A0A3Q1MSP2   A0A3Q1MJ53   A0A3Q1LWK8   A0A3Q1MS12   A0A3Q1M527   A0A3Q1LVS6   A0A3S2L0R7   A0A3Q1M0W5   A0A3Q1MM54   A0A3Q1NL67   A0A0J7KGF7   A0A3Q1MKR5   A0A3Q1MCP5   A0A3Q1NFT8   A0A3Q1M6I4   A0A3Q1LWQ9   A0A3Q1MKS2   A0A3Q1MEQ0   A0A3Q1LR83   A0A3Q1NAZ9   A0A3Q1M090   A0A3Q1M6V6   A0A3Q1MZD1   A0A3Q1MLF3   A0A3Q1N9U5   A0A3Q1MGI7   W5N9W4   A0A3Q1M4W4   A0A3Q1N5E6   D5LB38   A0A3Q1N0I8   W5MYT3   A0A3Q1LWK2   A0A3Q1LUF2   H3A382   A0A3Q1MLX8   A0A3Q1MD43   A0A0U4HM41   A0A3Q1LNR6   A0A3Q1MML0   A0A3Q1LWF9   A0A3Q1LLN0  

Pubmed

20470440    28756777    19393038    29078748    9215903    25527032    + More

EMBL

FJ265547    ADI61815.1    FJ265552    ADI61820.1    FJ265560    ADI61828.1    + More
FJ265548    ADI61816.1    FJ265546    ADI61814.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    GU815090    ADF18553.1    KZ150203    PZC72267.1    FJ265559    ADI61827.1    KZ150025    PZC74827.1    BDSA01000081    GBE63537.1    NCKU01004395    RWS06003.1    AFYH01119920    RSAL01000289    RVE42931.1    LBMM01007694    KMQ89503.1    AHAT01022314    GU815089    ADF18552.1    AHAT01017643    AFYH01204777    AFYH01204778    AFYH01204779    KU311054    ALX81665.1   

Proteomes

UP000009136    UP000285301    UP000008672    UP000283053    UP000036403    UP000018468    + More

PRIDE

D7F162    D7F167    D7F175    D7F163    D7F161    D7F172    + More
D7F168    D5LB39    D7F174    D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F162   D7F167   D7F175   D7F163   D7F161   D7F172   + More
D7F168   D5LB39   A0A2W1BGD9   D7F174   A0A3Q1LQN1   A0A2W1BNH4   A0A2H6KKM9   A0A3S3P648   A0A3Q1LR18   A0A3Q1MJK8   A0A3Q1M1T7   A0A3Q1MQ02   A0A3Q1MMW6   A0A3Q1MI63   A0A3Q1ML42   H3B2Y3   A0A3Q1LXQ5   A0A3Q1N3Y9   A0A3Q1MA23   A0A3Q1LUA6   A0A3Q1MXT5   A0A3Q1MDY8   A0A3Q1MLI2   A0A3Q1LWU3   A0A3Q1MTQ8   A0A3Q1NE48   A0A3Q1MCA0   A0A3Q1MWB3   A0A3Q1N1P1   A0A3Q1LNZ2   A0A3Q1MLZ9   A0A3Q1LI58   A0A3Q1LRD2   A0A3Q1LXF5   A0A3Q1MP18   A0A3Q1MLV4   A0A3Q1N2X2   A0A3Q1M8D1   A0A3Q1MZJ0   A0A3Q1M6J7   A0A3Q1LR52   A0A3Q1LIW6   A0A3Q1LWH0   A0A3Q1MGH6   A0A3Q1LX64   A0A3Q1LYT3   A0A3Q1MNB9   A0A3Q1MSP2   A0A3Q1MJ53   A0A3Q1LWK8   A0A3Q1MS12   A0A3Q1M527   A0A3Q1LVS6   A0A3S2L0R7   A0A3Q1M0W5   A0A3Q1MM54   A0A3Q1NL67   A0A0J7KGF7   A0A3Q1MKR5   A0A3Q1MCP5   A0A3Q1NFT8   A0A3Q1M6I4   A0A3Q1LWQ9   A0A3Q1MKS2   A0A3Q1MEQ0   A0A3Q1LR83   A0A3Q1NAZ9   A0A3Q1M090   A0A3Q1M6V6   A0A3Q1MZD1   A0A3Q1MLF3   A0A3Q1N9U5   A0A3Q1MGI7   W5N9W4   A0A3Q1M4W4   A0A3Q1N5E6   D5LB38   A0A3Q1N0I8   W5MYT3   A0A3Q1LWK2   A0A3Q1LUF2   H3A382   A0A3Q1MLX8   A0A3Q1MD43   A0A0U4HM41   A0A3Q1LNR6   A0A3Q1MML0   A0A3Q1LWF9   A0A3Q1LLN0  

KEGG

105842503    no KO assigned | (RefSeq) uncharacterized LOC105842503

GO

GO:0004519   GO:0003964   GO:0004197   GO:0016021  

Length:

528

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.96905

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04585

outside

1  -  528

 

 

Pi

0.201365

Theta

0.946273

Tajima's D

-0.805225

CLR

8.638389

CSRT

0.182490875456227

Interpretation

Uncertain