SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04831
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.157 Nuclear   Reliability : 1.008 PlasmaMembrane   Reliability : 1.458
 

Sequence

CDS
ATGAAAATCCGACTTATAACTCGTCAATTTAAGCCAAAGACTTGGGCTATTGAGAATGCGTCTGGAGATACTGTCACTGAGATCAAAAAGATTGTTAGCGCTTGGAAAGACTATTGCAAGTCTCTGTTTACTGACACCACAACAAAGATCTCAATGACCTACAGTGAACCCTCGGAACTGGAGCCGATGCCTCTAAAAGACGAGGTGCGAGCAGCTATCAACCACCTTAAACGGAATAAGGCTGTAGGTTTTGATGAAATCCCCATCGAGACAATAAAAGCCATGGGGGAAATCGGAGTGGATATACTGCACATCATCTGTTGTCGAATTTGGGTCACTGGAGTTTGGCCGAGCGATTGGTCACATTCGATATTCATTCCACTTCACAAAAAGGGATCAACGAAGAAGTGCAATAACTACAGACTAATTTCTCTCGTATCCCACGCCAGTAAAGTCATGCTGCACATAATTAACATGAGGCTCCAAGATTACTTGTCCCGAGAGATCGCCCTCGAGCAAGCAGGTTTTGTAAAAGGTCGAGCCACAAGAGAGCAACTACTCGTAATGCGGCAAATTGTAGAAAAGGCCAGAGAATTTAATATTAGCCTATATGTGTGCTTCGTTAATTTCCGAAAGGCTTTTGATACCGTCAAGTGGTGGAAGCTGTGGTTGGTACTGACGGAAATGGGAGTACCGCAACATCTTGTACACACCCTCAGACGTCTGTACGAAGATGGCACGGCCGCTGTTCGTATTGACAGTATTGACTCCGAACGCTTCAGCACACAGGCAGGCGTTAGGCAGGGCGGCATACTATCTCCTCTTTTATTTAATATATACACAGAAGACGAAATCGAGGTGCTTCTTCGCCGGCTGGAGACTACAGCGTTGGATTTTGGACTTGCGATCAATCGTGATAAGACCAAAATGATGATCGTAGATCGTGCTAACATCAACCAACCGGAAGTCCAACATATAGCGGGATGCGAGGTAGTTAATAGCTATGTATATCTAGGCTCCACTATCACCAACGCTGGAGGCTGCGAAGATGAGATCCGAAGACGTTGCGCCGTGACAAGATCCTTAGTTGAGAGGCTAACAAAGATTTGGAGAGACCGCAGAATAACCAAAAACACAAAAGTTCGGTTAATGAGATGCCTGGTCTTTCCAACATTTCTGTATGGGGCTGAGACGTGGACGCTGAGGATGCAAGACCGTCGTAAGATTGACGCACTGAAAATGTGGTATTGGAGACGTCTCCTCAGAATTCCGTGTACCGCGCACCGTACCAACATTTCGATCCTGAAAGAGCTCAACATCAAGGAGAGACTATCGTCAACAGTCCACTTACAAATCCTCAAGTTCTTCGGGCACATCACTCGTAATGAGGACTCTATTGAGCGGTTGGTGGTGCAAGGGAAAGTCGAGGGCAAAAGATCTCGCGGACGATCTCCAACACGATGGACCGACCTCATAAAATCTGTGACTCACTCCAACATAAATGTTTGCTCTCACTCTGCGAAATATCGTGCCACATGGCGTCGCATCGCGAGAGCATCAGTATCGCAGGATCCGACTGATGCATGA
Protein
MKIRLITRQFKPKTWAIENASGDTVTEIKKIVSAWKDYCKSLFTDTTTKISMTYSEPSELEPMPLKDEVRAAINHLKRNKAVGFDEIPIETIKAMGEIGVDILHIICCRIWVTGVWPSDWSHSIFIPLHKKGSTKKCNNYRLISLVSHASKVMLHIINMRLQDYLSREIALEQAGFVKGRATREQLLVMRQIVEKAREFNISLYVCFVNFRKAFDTVKWWKLWLVLTEMGVPQHLVHTLRRLYEDGTAAVRIDSIDSERFSTQAGVRQGGILSPLLFNIYTEDEIEVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTRSLVERLTKIWRDRRITKNTKVRLMRCLVFPTFLYGAETWTLRMQDRRKIDALKMWYWRRLLRIPCTAHRTNISILKELNIKERLSSTVHLQILKFFGHITRNEDSIERLVVQGKVEGKRSRGRSPTRWTDLIKSVTHSNINVCSHSAKYRATWRRIARASVSQDPTDA

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
528
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.96905
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04585
outside
1  -  528
 
 

Population Genetic Test Statistics

Pi
0.201365
Theta
0.946273
Tajima's D
-0.805225
CLR
8.638389
CSRT
0.182490875456227
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号