SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04824
Pre Gene Modal
BGIBMGA009827
Annotation
PREDICTED:_uncharacterized_protein_LOC106142321_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.876 PlasmaMembrane   Reliability : 1.203
 

Sequence

CDS
ATGGGCTTTAGTAACCACTCGGACGGATCTCAAGTCGGCACAATGGTTGGCACTAACAATTTGCGAAGCAATCTAAGCGACGTGTTCAGTGAAAAGCAATTAAGTCAAATAGTCAAATCATCAGTGGGCGAGGGTGGGAAAGTGATTGATGGGTACGTCAAACCTGTCGCTGATGGCATAGCAGGATTCCTCGGTGATCATTTTAAAGTGACTTTAGAAGTACAAGTGAGTGGACAAGTTACATGTTTGCATTTATTCGTGAAACGATTGCCTGTTAACAATAAACCGAAGGCTGAGTTCATCGACAGTCAGCACTTTTTTAGAAGAGAGCGGTTAATTTTTGAACTTTTTGAAGAATTTGAGGACGTCGGAGATCCGAATCCATGGAACGTCAAAGCATACCTATACTCCGACAGCATGCTGGTCCTGCCCGACTTGGACATCCAGGGCTATCGTTCTCGGCACCACCTGGATACCTTCGACCTACCACACGCGACAGTCACCATTACGTCCATCGCTCGTTTCCACGCAACCTTCGCTAATTACGAGACTAAGAATATCCTCAACGGAAGAAGTGAATACAATTTTTACAAACAACACGAACACTTATTAAACGAACCCACTTTTAAGGACTGCCCTTGGCTTCGTGCGGCCGCAAAATGTATTTCAGACATCCTAAACACTTTCTCCGCAAAATACGTTGGCTTGCCAGAATTAGAAAATAGTATTGTAAAATTGTTTATAGAAGCTTGTGATAGTTTGACTGTAGTTAAAGATGGATTCAATGTATTGATACACAAAGACTTATGGGCTAATAACATCATGTTTAAATACGAGGACTGCAATCCTAATAATGCTGTTATCATAGATTACCAATGTATAAGATACTCGGCACCGACGTTTGATGTCATGACCTTTCTGTACCTGACGACATCGAAGAGTTTCCGGCAGCAGCACGAAACAGGAATCTTCGAGCACTACTATACAATTTTTTCCAAGCATCTAAATGAAAATACCAAATTGAGATTGAAAAGAATCGGCTACAACTGGGAGGAATTTTTGAAGAGTTGCGAAAACTCTAGAATGTTTGGTATTTTTCAAGCTTTGGGTATATGTCCTTATATCTTATTAGATCCGAAGACTGCTGCAGCTACTTTTGACGATCCGGAAACCTTTCAGAAGCATAACTTCGAAGATAGGTCTGCCCCTTTAATACGCTACGCGAGGACCTGCAATGTATACCGGGAGAGACTGGTAGAATTGTCTGAGGAATTCGTGGAAAGATATTTATTGAAAAAATAA
Protein
MGFSNHSDGSQVGTMVGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPVADGIAGFLGDHFKVTLEVQVSGQVTCLHLFVKRLPVNNKPKAEFIDSQHFFRRERLIFELFEEFEDVGDPNPWNVKAYLYSDSMLVLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFHATFANYETKNILNGRSEYNFYKQHEHLLNEPTFKDCPWLRAAAKCISDILNTFSAKYVGLPELENSIVKLFIEACDSLTVVKDGFNVLIHKDLWANNIMFKYEDCNPNNAVIIDYQCIRYSAPTFDVMTFLYLTTSKSFRQQHETGIFEHYYTIFSKHLNENTKLRLKRIGYNWEEFLKSCENSRMFGIFQALGICPYILLDPKTAAATFDDPETFQKHNFEDRSAPLIRYARTCNVYRERLVELSEEFVERYLLKK

Summary

Similarity
Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
EMBL
BABH01026750    KZ150126    PZC73108.1    NWSH01000742    PCG74462.1    ODYU01000324    + More
SOQ34864.1    JTDY01003245    KOB69886.1    KQ460367    KPJ15439.1    KQ459595    KPI95801.1    GDQN01005003    JAT86051.1    AGBW02008930    OWR52167.1    KQ459599    KPI94427.1    KQ461154    KPJ08437.1    KPI94428.1    ODYU01005000    SOQ45442.1    KPJ08436.1    KQ761346    OAD57837.1    JTDY01001890    KOB72621.1    KQ414639    KOC66818.1    KQ971342    EFA03937.1    KZ288232    PBC31485.1    DS232520    EDS42971.1    GL443864    EFN61576.1    EFN61578.1    JTDY01003170    KOB70020.1    BABH01013774    KQ434869    KZC09408.1    AGBW02012491    OWR44993.1    LBMM01005433    KMQ91529.1    KQ979608    KYN20424.1    KQ981965    KYN31801.1    KB632064    ERL88482.1    CH477398    EAT41774.1    APGK01035612    KB740928    ENN77872.1    KK107139    EZA57755.1    QOIP01000003    RLU25036.1    EFN61579.1    JXUM01142400    KQ569416    KXJ68636.1    GL765434    EFZ16323.1    GDUN01000271    JAN95648.1    AAZX01018058    KQ414807    KOC60591.1    JXUM01080854    KQ563212    KXJ74284.1    GL888243    EGI64018.1    CH963920    KRF98755.1    GL449382    EFN82948.1    ADTU01023697    KQ976691    KYM77968.1    GL771089    EFZ09829.1    GL447689    EFN86121.1    KQ982944    KYQ48965.1    OWR44992.1    APCN01002494    KXJ74283.1    CH940649    EDW64203.1    CVRI01000020    CRK90554.1    KZ288353    PBC27284.1    JR045443    AEY59980.1    AF531953    CM000158    AAQ09852.1    EDW89971.1    GL435377    EFN73398.1    CH902624    KPU74451.1    QOIP01000001    RLU26449.1    CH916368    EDW03618.1    NNAY01000087    OXU31125.1    GEHC01000254    JAV47391.1    LJIG01000093    KRT86847.1    NNAY01003909    OXU18671.1    AAAB01008964    KQ435762    KOX75449.1    EFA03938.1    AE014134    BT128869    AAF53956.1    AEN86879.1    BT022890    AAY55306.1    CH480833    EDW46422.1    KQ971338    EFA02038.1    GBGD01001712    JAC87177.1    PYGN01000502    PSN45249.1    CM000361    CM002910    EDX05697.1    KMY91273.1    GANO01004792    JAB55079.1    KZ288301    PBC28831.1    LBMM01003342    KMQ93639.1    GL888284    EGI63309.1    ACPB03005212    GFDL01004814    JAV30231.1   
Pfam
PF02958   EcKinase        + More
PF00400   WD40
PF00858   ASC
Interpro
IPR015897   CHK_kinase-like        + More
IPR004119   EcKinase-like       
IPR011009   Kinase-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR001680   WD40_repeat       
IPR001873   ENaC       
IPR000719   Prot_kinase_dom       
SUPFAM
SSF56112   SSF56112        + More
SSF50978   SSF50978       
SSF50998   SSF50998       
Gene 3D

Ontologies

Topology

Length:
433
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05444
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00278
outside
1  -  433
 
 

Population Genetic Test Statistics

Pi
8.365778
Theta
10.97442
Tajima's D
-0.797896
CLR
1.196245
CSRT
0.176291185440728
Interpretation
Uncertain
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