Silkworm Genome Informatics Database

Gene

KWMTBOMO04822

Pre Gene Modal

BGIBMGA009921

Annotation

E3_ubiquitin-protein_ligase_MARCH2_[Papilio_xuthus]

Location

Bomo_Chr8(+):15876872-15882162 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.434 Nuclear Reliability : 1.362 PlasmaMembrane Reliability : 1.241

CDS

ATGAACAGATTTATAACACGAAATTGCTTCGTAAATTCCAACCAGGCGGATGATTTCACAAGACAAACAGTGCAGGATGTGAGACAGGCAGTCCTCTCATCGGCCTCGCTCAGACCAAGAATTCAAGAAGCTTTAGAAAGAATCAATTTTAGATTTCATCGAACTTGCAGCTTTTCCAATATAATTAGAGATTGTTACGTGAATGAGGCTGAAACCCTGCTGATGTACCGGGGCTGCGACGAGTCCGAGAGTCGGGCCACCATGAGCGTCACAGCCTCGACCTGTTCTTCCACGCAGCAAGTGCCAGCGCACCAACGCGACAGAGAGCTCCGGTCGTCGTCACAGCAGACGGACATCAGTTGCAGAATAATCTCTGGGATCGCCTCTCCAGTAAATGAAGTGGAAGAACAGCGTTTGCTGCGAGCTCGTATTGCCGATTCCCTGACAGTTTCATCCCCTGCATCTTCTCTGGTACATCCTGCTGGCAGATCCATATCTTTAATAGGATCGGTGTGTGCGTTATTATTGAATAAACAAGGCACCGTAACTCCTAAAGATGTTCCAAGCTTCACGGGAAGCCTGCGGTCGGACATATGTCGCATTTGTTTTGGTGGAGAGAGCGCCGAGAGACTGGTCCGGCCGTGCGGCTGCCGGGGAACCATCGCCGCTGTCCATCGGACCTGCCTCGAACGCTGGCTCCTGCAGGCCGCCACCTCGTACTGCGAGCTGTGCAGGCATCATTACATTGTTACGAGGAGTCATAAATGGTCCTGGATCCGTTCCATGGCGGAATGGGCGGTGTCGGGGCAGGGGCGCGCGCTGGCGGCGGACGCGTGGCGCGGGCTGGTGCTGGGCGCGGCGAGCGTGCTGGGCACGGCGCGGGCGCTGCACGCGTGCGACGCCGTGCTGCAGGCGGGCGCCACGCGCGGCGGCGGGGCTGCCCTGGCCGCTAACCTCTTCTCTTCGATTTTGATTGGAGTTATTGGTGCCTTAAACGGGCTTTTAACCACTTGGATGCTGCTTAAGATTCAAGAGCACCAGAGCTCGTGGAGGGCGTGGCGCGACAGTACTCTGCACGTGCACGTCACCCTCTCCCCGCACCGCTCCCCCCGTGCCTCCCCCCACCTCACCCCTCAAGCATCAGACCAGACCGTGGTAGCCGTTGATAGCTCCACCAGAGATAGGAGCACAAATGTAGCTGATCCATTTATGGTCGCTGTTCCGTATACTTTGCCGGATTCTTGA

Protein

MNRFITRNCFVNSNQADDFTRQTVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNIIRDCYVNEAETLLMYRGCDESESRATMSVTASTCSSTQQVPAHQRDRELRSSSQQTDISCRIISGIASPVNEVEEQRLLRARIADSLTVSSPASSLVHPAGRSISLIGSVCALLLNKQGTVTPKDVPSFTGSLRSDICRICFGGESAERLVRPCGCRGTIAAVHRTCLERWLLQAATSYCELCRHHYIVTRSHKWSWIRSMAEWAVSGQGRALAADAWRGLVLGAASVLGTARALHACDAVLQAGATRGGGAALAANLFSSILIGVIGALNGLLTTWMLLKIQEHQSSWRAWRDSTLHVHVTLSPHRSPRASPHLTPQASDQTVVAVDSSTRDRSTNVADPFMVAVPYTLPDS

Uniprot

H9JK70 A0A2A4JR02 A0A2W1BJU8 A0A3S2M6X8 A0A194PS66

Pubmed

19121390 28756777 26354079

EMBL

BABH01026741 NWSH01000742 PCG74467.1 KZ150126 PZC73106.1 RSAL01000018 + More
RVE52871.1 KQ459595 KPI95808.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268

PRIDE

H9JK70

Pfam

PF12906 RINGv

Interpro

IPR011016 Znf_RING-CH + More
IPR013083 Znf_RING/FYVE/PHD

Gene 3D

3.30.40.10

ProteinModelPortal

H9JK70 A0A2A4JR02 A0A2W1BJU8 A0A3S2M6X8 A0A194PS66

PDB

2D8S E-value=4.01039e-07, Score=130

KEGG

101741100 no KO assigned | (RefSeq) uncharacterized LOC101741100

GO

GO:0008270 GO:0016021 GO:0046872 GO:0016874 GO:0043022 GO:0016020 GO:0007264 GO:0008083 GO:0006003 GO:0006032 GO:0005515 GO:0016742 GO:0003824

Length:

414

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

25.66981

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36635

outside

1 - 318

TMhelix

319 - 341

inside

342 - 414

Pi

22.683381

Theta

20.355177

Tajima's D

0.342632

CLR

0.680472

CSRT

0.474576271186441

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics