Silkworm Genome Informatics Database

Gene

KWMTBOMO04820

Pre Gene Modal

BGIBMGA009920

Annotation

ubiquitin-specific_protease_[Danaus_plexippus]

Location

Bomo_Chr8(+):15859752-15866826 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.002 PlasmaMembrane Reliability : 1.697

CDS

ATGGATGGTGGAGACAGGATCTTAGTCGCTGCGGGCCTTACAGCTGCTGTTGTCGTTGGAGCTTTCGTATTATGGGGACCGGGAGGTGCTCCGAAGGTTCGGAAGCGTCGTGGACAGATTGCAGGTCTACAGAACATGGGCAGGACCTGTTTTCTGAATACATTGCTCCAGGCCCTTGCAGCGTGCCCCACCTTCATTGAATGGTTGAAGAGATATGCCAAAGCCAATTCTCACAACAGTATGATTACGACTCTGTACACTGTTATTGAAGTTGTAAATGGAACTCACGAATCAGCACGAGGCACTCCAGTCTGTCCACTTGGAGTACTGCAGTCTCTCAGGGCAGCTGGCTGGGTGGTGCCAGCTGACCAGCAGGATGCACATGAGTTGCTGCATGTACTACTTACTTGTATCGAGGAAGAAACAGCAGCTATGGCTAGAAAGCCAGGTTGTTTATCGGACGCCTTAGGTTTGGGAGGAGGCCGTGCGTGGTCAGCTCTAGCTTCGCCTGCATCACCACCGGCAGCCCCTGCCACTCCATCATTATTAACTCGTCCTGCATCAGCAGCTCCCGGGGATGAACCTGACTTAGCTGATCCGGAGCCGAACCCTGGTCCCTTGGTCCGCAAGGGTGTATCCCGTTCGTTCTGCCAGCTGAGCTCCGTGGGGCGGCGCTGGGCGTGCCCCGCCCCCGCGCGCCCTGCCCCCTCGCCCCCTTTCCGCGGGACTCTCGCCTCCAGACTGCACTGTACGGTCTGCTCCACCAAGAGTCCGATCCGTTACGACAAATTCGACAGCGTCTCGTTGTCCCTGGACAGCGCCGGCGCCGGGTTCAGCGGGACCTACAGTCTGGCAGGTTTACTCCGGGCGTTCACAGCCCCGGAGATGGTGAACGGCGTGGAATGCGCGAACTTCGGCAAGTTGCCCCCTTGCCTGTGCATGCAAGTGTCCCGCGTGCAGTGGGCTGGCGGACGGCTCAACAAGCGCGCCGAACACGTCGCCTTCCCAGAGACGCTCTCCATGGCGCCCTACGCCACCCTGCATCAGCCCAAGAACGAGCTCATGTCCCTGGTGGGCGAAGGGCGCCTCCGCAGCGGCCTCAGCGTGTGGAACGCGCGCGGGGGCGGGGCGGGCGCGCGCGGGGGGGACGCCGCCCCCTACACGCTGGTGGCCGTGGTGGTGCACGTGGGGGGCGCGCGCTCCGGACACTTCGCCACCTACAGGAGGGGGAACGGGTTTGAAGCTAAACGGTGGTGGTACACGTCGGACACGCTGGTGCACGAGGTGTCCCTGCAGGAGGTGCTCCGCTGCTCGGCCTACATGCTCTTCTACGAGCGGGAGAGACAGGACACTCAGCACTTCTGA

Protein

MDGGDRILVAAGLTAAVVVGAFVLWGPGGAPKVRKRRGQIAGLQNMGRTCFLNTLLQALAACPTFIEWLKRYAKANSHNSMITTLYTVIEVVNGTHESARGTPVCPLGVLQSLRAAGWVVPADQQDAHELLHVLLTCIEEETAAMARKPGCLSDALGLGGGRAWSALASPASPPAAPATPSLLTRPASAAPGDEPDLADPEPNPGPLVRKGVSRSFCQLSSVGRRWACPAPARPAPSPPFRGTLASRLHCTVCSTKSPIRYDKFDSVSLSLDSAGAGFSGTYSLAGLLRAFTAPEMVNGVECANFGKLPPCLCMQVSRVQWAGGRLNKRAEHVAFPETLSMAPYATLHQPKNELMSLVGEGRLRSGLSVWNARGGGAGARGGDAAPYTLVAVVVHVGGARSGHFATYRRGNGFEAKRWWYTSDTLVHEVSLQEVLRCSAYMLFYERERQDTQHF

Similarity

Belongs to the peptidase C19 family.

Uniprot

A0A2H1W3T0 A0A194RHM9 A0A212FEL7 A0A194PR49 A0A2A4JRN3 A0A0L7LGW5 + More
A0A1A9YMZ4 A0A1B0AXC3 A0A2J7Q8I3 A0A067RGY8 A0A154NY18 A0A2J7Q8I7 A0A2P8YQZ1 A0A2S2QUA3 J9K8G8 A0A1B6CF67 A0A1B6C4B8

Pubmed

26354079 22118469 26227816 24845553 29403074

EMBL

ODYU01006120 SOQ47693.1 KQ460367 KPJ15451.1 AGBW02008930 OWR52160.1 + More
KQ459595 KPI95787.1 NWSH01000742 PCG74469.1 JTDY01001166 KOB74672.1 JXJN01005211 NEVH01016952 PNF24901.1 KK852473 KDR23101.1 KQ434782 KZC04513.1 PNF24900.1 PYGN01000420 PSN46676.1 GGMS01012124 MBY81327.1 ABLF02022088 ABLF02022089 GEDC01025217 JAS12081.1 GEDC01029149 JAS08149.1

Proteomes

UP000053240 UP000007151 UP000053268 UP000218220 UP000037510 UP000092443 + More
UP000092460 UP000235965 UP000027135 UP000076502 UP000245037 UP000007819

Pfam

PF00443 UCH

Interpro

IPR028889   USP_dom        + More
IPR038765   Papain-like_cys_pep_sf
IPR001394   Peptidase_C19_UCH
IPR018200   USP_CS

SUPFAM

SSF54001 SSF54001

ProteinModelPortal

A0A2H1W3T0 A0A194RHM9 A0A212FEL7 A0A194PR49 A0A2A4JRN3 A0A0L7LGW5 + More
A0A1A9YMZ4 A0A1B0AXC3 A0A2J7Q8I3 A0A067RGY8 A0A154NY18 A0A2J7Q8I7 A0A2P8YQZ1 A0A2S2QUA3 J9K8G8 A0A1B6CF67 A0A1B6C4B8

PDB

5OHP E-value=7.13585e-24, Score=274

KEGG

101745026 K11851 ubiquitin carboxyl-terminal hydrolase 30 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-termina

PATHWAY

04137 Mitophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0016579 GO:0036459 GO:0016021 GO:0006511 GO:0016020 GO:0007264 GO:0008083 GO:0006003 GO:0006032 GO:0005515 GO:0016742 GO:0003824

Length:

454

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.6930599999999

Exp number, first 60 AAs:

22.88935

Total prob of N-in:

0.93718

POSSIBLE N-term signal

sequence

inside

1 - 6

TMhelix

7 - 29

outside

30 - 454

Pi

18.558994

Theta

15.702064

Tajima's D

0.773637

CLR

0.93298

CSRT

0.607219639018049

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics