SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04819
Pre Gene Modal
BGIBMGA009831
Annotation
PREDICTED:_WD_repeat-containing_protein_24-like_[Amyelois_transitella]
Location
Bomo_Chr8(-):15845659-15859361      View in EpiBrowser
Location in the cell
Extracellular   Reliability : 1.98 Nuclear   Reliability : 1.401
 

Sequence

CDS
ATGATTCCATCTAATACAATTTGCGTATCAGAAGAGGGTCCAGCTAATGCTTTAGCGCTAAATAAAGATGCAACACAAGTCGTAATAGCCGGAAGAAATGTGTTCAAGGTTTTTTCGATTGAAGAAAATGATTTCACGGAAGTGTGTAATTTGAGAGTAGGAAAGAATTTAAATCTCAACTTTTCGTCCATTGATGTGGCCTGGAGTACAATTGAAGAGAACACACTAGCAACAGCAGCTACAAATGGTGCTGTGGTAGTATGGAATCTTGGGAGGTCGGGTCGCTCAAAACAGGAACATGTATTCTCAGATCATAAAAGAACAGTCAATAAGGTGAGTTTCCACCTTACTGAGCCTGCACTGCTTATATCTGGCTCCCAGGATGGGATGATGAAATGTTTTGATCTTCGAATGAAGGAAGTTGCCAGAACTTTTATAAGCAACACGGAATCAATCCGGGACGTCCAGTTCAGTCCGCACCAGGCCCACACATTCGCGGCCGTCTCCGAGAACGGCAACGTCCAGCTGTGGGACGTGAGGCGCCACGAGCGATGTCTCCAGCAGTTCACCGCGCACTCGGGGCCGGTGTTCGCGTGCGACTGGCACTCGGAGATGCCTTGGCTTGCCACGGCCTCCAGAGATAAGACGATTAAAGTATGGGACATTCACGCCAAGCCCAACCTAGAGCACACTATATACACGATAGCGTCCGTGGGCCACGTCAAGTGGAGACCGCAGAAAAAGTACCAGGTCGCGTCGTGCGCGCTGGTGCTGGACTGCGCCGTGCACGTGTGGGACGTGAGGAGGCCGCACGTGCCGCTCGCCACCTTCGCCGAGCACCGGGACGTGACCACAGCCATCGCCTGGCAGAACGACCCCAACACCTTCCTGTCCACCAGCAGGGACTGCAGCCTGTACCGGCACCGCTTCTCGGAGGCGGCGCACCCCGTGCTGTGGGCCAACCCGCACGGCGTGTGCGTGTCCGCGCGCGGTGACGTCACGCACGCCGCCCCCGACTGCCCCCTGCCCGCGCTGCACACCAACCCCGCCTCCGACCGATACGTACCTGGGCTCGGCCGAAAGCAGCCGACCGCAGGCTCGCTGCGTCCGCAGGCTCAGGCCGCACTGGAGCGCCTGTTCCCCGGGGGCGCCGCCTCCATCCTCACCAGGTACTCGGGCGAGGGTCGTCCACCGTGCTGCGTGGTGGCCTGCGCCAAGGAGTACAAGATGAGAGGCCTCCCCACTCACGAGCTCGCCGAGCACAACGCCAAGGTCGCCAGAGCTTACAACCGGCACATGGTGGGGCACGTGTGGGAGGTGGTGCGCTGCGTGTACGGCAGGCCGCCGCCCCGGGAGCCCCCAGAGCGCGAGCCTCCGCCCCCGCCGCCCGCACACACCAACAGTAATGCAGTGGAAGAAGAGCCCTTAGAGGAAGTGGAGCAGTGGGCGGAGACGCAGTTCCACAACAGCGGGGTGCTCGGCATGCCCACGCTCAGCATCTACATCCCGCCGCACAAGTACAAGATACGCCACGACGAGGGGTCGGGCTGGGTGTCGGCGGCCAGCGCGCACTACGTGGATGTGGAGACGGCCGACTGGACCCTCCCTGAGGAGGCCTTCCCTCTGCGCGCCCCTCCGCCGGCCCACCAGCCCTCCATACTCGACACGACGCACGGTCGCACGGCTGCGGGCGGGGCGTCCCCCGGAGGCAGCTCGTCACCGGGGAGCGGCTCGAGCGGCTCCAACGGCTCGGCGTGCACCGCTCCACCGAACTTGGAGCAGACCTCCAGCGCGTACCCCGGCGCCGCCACGTTGTGTCGCGCACAGCCGGAGGAGGGAGAGTCTGGTCCCCTGTGGGTGGTGCACGAGGCGCTGCGCCCCCACGTGGAGCCGGCGCCGCTGCTGGCGCTGGCGCTGCGCCACCACGCCGACCTCGGCGACGTGCAGACCGCCGCGCTCGTCATGATCGTGCTGCACGAGCACAGGAGCGACTTGTTCCCGTACATAGACGAGGGTCTGCAGGAGCACTGGCTGCTGGGCTACATCGAGTTCTTACAGAAACACAAACTGTGGAATGTCGCCACTGAGGTGGTGCGGTGCGCCTGGCTGAGCAGCGTGTGGTCGTTGTCCCAGCAGTCCAGCAGCGTCACGGTGTGCTGCGGGCGCTGCGGCCGGCGCGCGCGGCCCCGGGCCATGTGCGACCGCTGCCTGCCCCACCCCGACCTGTGCGCCGTGTGCCGACAGGTGGTGCGCGGGCTGTACGCGTGGTGCCAGGGCTGCTCGCACGGCGGCCACTTGGAGCACATGCGCCAGTGGATGGAGAAGCACCAGCTCTGTCCCGCCGGCTGCGGACATCACTGTCAACTAGGCTGA
Protein
MIPSNTICVSEEGPANALALNKDATQVVIAGRNVFKVFSIEENDFTEVCNLRVGKNLNLNFSSIDVAWSTIEENTLATAATNGAVVVWNLGRSGRSKQEHVFSDHKRTVNKVSFHLTEPALLISGSQDGMMKCFDLRMKEVARTFISNTESIRDVQFSPHQAHTFAAVSENGNVQLWDVRRHERCLQQFTAHSGPVFACDWHSEMPWLATASRDKTIKVWDIHAKPNLEHTIYTIASVGHVKWRPQKKYQVASCALVLDCAVHVWDVRRPHVPLATFAEHRDVTTAIAWQNDPNTFLSTSRDCSLYRHRFSEAAHPVLWANPHGVCVSARGDVTHAAPDCPLPALHTNPASDRYVPGLGRKQPTAGSLRPQAQAALERLFPGGAASILTRYSGEGRPPCCVVACAKEYKMRGLPTHELAEHNAKVARAYNRHMVGHVWEVVRCVYGRPPPREPPEREPPPPPPAHTNSNAVEEEPLEEVEQWAETQFHNSGVLGMPTLSIYIPPHKYKIRHDEGSGWVSAASAHYVDVETADWTLPEEAFPLRAPPPAHQPSILDTTHGRTAAGGASPGGSSSPGSGSSGSNGSACTAPPNLEQTSSAYPGAATLCRAQPEEGESGPLWVVHEALRPHVEPAPLLALALRHHADLGDVQTAALVMIVLHEHRSDLFPYIDEGLQEHWLLGYIEFLQKHKLWNVATEVVRCAWLSSVWSLSQQSSSVTVCCGRCGRRARPRAMCDRCLPHPDLCAVCRQVVRGLYAWCQGCSHGGHLEHMRQWMEKHQLCPAGCGHHCQLG

Summary

Uniprot
A0A1Y1LB70   T1HN59   W5KIJ7   H2URT0   A0A1S3NG06   A0A1A9XMV6   + More
A0A1B0BNY5   A0A147BLK2   E9GN97  
Pubmed
28004739    25329095    21551351    29652888    21292972   
EMBL
GEZM01065859    JAV68297.1    ACPB03007651    JXJN01017678    GEGO01003768    JAR91636.1    + More
GL732554    EFX79073.1   
Proteomes
UP000015103    UP000018467    UP000005226    UP000087266    UP000092443    UP000092460    + More
UP000000305   
Pfam
PF00400   WD40
Interpro
IPR017986   WD40_repeat_dom        + More
IPR036322   WD40_repeat_dom_sf       
IPR001680   WD40_repeat       
IPR037590   WDR24       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
SUPFAM
SSF50978   SSF50978       
Gene 3D
2.130.10.10    
ProteinModelPortal
A0A1Y1LB70   T1HN59   W5KIJ7   H2URT0   A0A1S3NG06   A0A1A9XMV6   + More
A0A1B0BNY5   A0A147BLK2   E9GN97  
PDB
4XYI     E-value=5.07237e-16,     Score=209

Ontologies

KEGG
101742516    K02154 V-type H+-transporting ATPase subunit a | (RefSeq) V-type proton ATPase 116 kDa subunit a iso
GO
GO:0032008   GO:0005515   GO:0007165   GO:0016020   GO:0007264   GO:0008083   GO:0006003   GO:0006032   GO:0016742   GO:0003824  
PANTHER
PTHR46200  

Topology

Length:
790
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00485999999999999
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.00028
outside
1  -  790
 
 

Population Genetic Test Statistics

Pi
22.801681
Theta
17.356794
Tajima's D
0.263241
CLR
1.544416
CSRT
0.452127393630319
Interpretation
Uncertain
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