Gene

KWMTBOMO04817

Pre Gene Modal

BGIBMGA009832

Annotation

PREDICTED:_WD_repeat-containing_protein_mio_[Bombyx_mori]

Location

Bomo_Chr8(-):15811223-15820011      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.515 Nuclear   Reliability : 1.002

CDS

ATGTCTAGCAGATTGGATATATTATGGTCACCGGCACATCATGACAAATTCATTGTTTGGGGCCCAGACATAACCTTGTACGAAGTGGCAAGGATAAAAGAAATCGAGAAGAAAACGACTTTCACTCCAATTTCCTCAACCTATGGAGCCACAGTTGTTGCGTCCCAGAGTGCTAGTGGAGTGCGGTGCGTTGATATCAGTGCTGAACCAGAGCAGCCTGAGCCATTGCTCGCTCTTGGATATGCTAGTGGACGGGTCTCACTTACCACCCTTAAACAAACATATGACCCTTTGGGACTAGTTGGAAGAGAGTTTGCACCAAGATACCAAAGGCTTTGCAACTCTGTGTCATGGAGTCACATGGAGACAAACATGTTGGCAGTCGCGATGGATAAACATCGTAGTGACCACTGCATACTTGTATGGGATGTAAACCGAGGTTCGGCAGCTGCTGATGAGGCTTTAGAAAGTACTTCTCAAGGAAGTGTAGATCCGATGCGACCACTAGCAGAAATGGGACTATCTGAGACAGCACATAATGTAACCTGGTCTAACTGCTCGAACAGGACCTTATTGGCTTCAATGAACTTGAAGTACATCAAAATATTTGATCTTAGAGATTTATCGAACAAAGCCGTGAGCATGACCGCGACCCGCTACTGCTACGGTGTGTGTGCCGACCCGAACAGCTCCCACCAGCTCGCCTCCCGCGGAGAGAACGTGGTCTGTCTTTGGGACACCAGGCACTTCGACCGCCCCGTACTCTCTCTGCAGCATCCCCGGCCTCTAGCCGTCACCCATCTGCAGTGGTGCCCTACCAGACGCAACCTTCTTCTCTCGCTACAGAGAGATTCCAAGTCGCTCCGCATCCACGACATACAGCAGGCCAGTGCGGAGTGGAAGAAAAACGCGCTCGATGTGCTGACGGCGACGGCCGTAGAGGCCGAAGTGGAGGAGTACTCTCGCAGACCGAGCGTGTTGGAGCGTGACGTCACTCCTGGAGGGTCGCAGCCGCTCGTGGCCTTCTGCTGCCATCCGGCTCACGAGGCGCGTCTGCTGGCACTCAGCGCCACAGGCGGTCTGGTGGACTACACGGTCTGCGAGCGCGTGGCGGTGTCCTGGGGGGCGGGGGGAGGGCTGGCCTGGTCCGGGGGAGGAGGGGGACTCCGTGTCCTCAACGACGACTTGTGCGGGGTCGTGAAGGACATCTCGCACGTCATGAGACGACGCGCCCAAACCGACTACGGCCTCAAGCAAGACCTGTGGCAGAACGCAGACCTCGCCGATGACGACGCGCTCAGTGCCCTGTGGCACTTCATGGCCTTGAGCAAGTCCTTGGTGGAAGATGGTTGCATAAGGAACAGTCCGTGGAAGCACCCGGGCGTGCTGACCGTGCTGCGGTCCCCGGGCGACGGCGGCTACCGCTCCGAGATAGTGCCCTCCCTGCTGCCCGATATGCCTAACCGCAGGGTCACGCTCTACAGGAGTGCAGAGCGAACTCGTGCACTGCAGCTGTGCGGGTGGGGGTGGGGGTGGGAGAACGCGGACGCGGGGGTGGAGCGCGCCGAGGCCGAGGGCACCCCGTGTCGCGCCGCCGCACTCGCCGCCTTCCACCTCCGGCTTAGGACTGCTCTGGACGTGCTGGCCCGGGCGCACGAGCCGCAGAATTGTAACCTGTGCAAGATCCAATTCAGTGATGGTGTTCAATGCGGTACGTGCAAGAAGCATTTTGACTTCGGATGCGCTAATATTACAGAAGCTGGATATAGAAAACTGGGCCCCGAAAGAAGGGCGGCATGGAAGTGTTCTGCTTGCAGAAACCCTTCGCAAGCGGTTGCTTCACAGGCCAGCCCAGTCTCTCCAGTTCAGGGCTTAGTGACGCTAGAAATGATCCACGCTGAATTATGCGGCGTAAATTGA

Protein

MSSRLDILWSPAHHDKFIVWGPDITLYEVARIKEIEKKTTFTPISSTYGATVVASQSASGVRCVDISAEPEQPEPLLALGYASGRVSLTTLKQTYDPLGLVGREFAPRYQRLCNSVSWSHMETNMLAVAMDKHRSDHCILVWDVNRGSAAADEALESTSQGSVDPMRPLAEMGLSETAHNVTWSNCSNRTLLASMNLKYIKIFDLRDLSNKAVSMTATRYCYGVCADPNSSHQLASRGENVVCLWDTRHFDRPVLSLQHPRPLAVTHLQWCPTRRNLLLSLQRDSKSLRIHDIQQASAEWKKNALDVLTATAVEAEVEEYSRRPSVLERDVTPGGSQPLVAFCCHPAHEARLLALSATGGLVDYTVCERVAVSWGAGGGLAWSGGGGGLRVLNDDLCGVVKDISHVMRRRAQTDYGLKQDLWQNADLADDDALSALWHFMALSKSLVEDGCIRNSPWKHPGVLTVLRSPGDGGYRSEIVPSLLPDMPNRRVTLYRSAERTRALQLCGWGWGWENADAGVERAEAEGTPCRAAALAAFHLRLRTALDVLARAHEPQNCNLCKIQFSDGVQCGTCKKHFDFGCANITEAGYRKLGPERRAAWKCSACRNPSQAVASQASPVSPVQGLVTLEMIHAELCGVN

Uniprot

A0A2H1WB06   A0A2A4K6R2   A0A2A4K7L7   A0A194PR54   A0A194RC80   A0A212FEH8   + More
A0A067R031   A0A2J7R195   A0A2J7R1C2   A0A2J7R1A2   A0A1B6E123   A0A1B6CGC5   A0A1B6L8L7   A0A1B6IDD1   A0A1B6H0J4   A0A0C9QYF2   A0A310SSH7   A0A154PSS2   A0A087ZWD8   A0A0L7QV95   A0A1Y1KB36   A0A0N0BEV0   A0A2A3ELD9   D6X052   A0A1W4XSV9   E2BJ86   A0A232FKD7   A0A0P4VU12   A0A139WCL5   A0A023F548   K7IYZ6   A0A026W3K6   A0A3L8DLU9   A0A0A9ZBQ5   A0A0A9ZA57   A0A146LXW2   T1HA87   A0A0J7NZZ8   A0A158NDY1   A0A195BPP5   F4X1U9   A0A151X4E6   A0A195D806   A0A195ERF4   E9IGT8   A0A0T6B5S4   E0VU36   A0A2S2RA21   A0A0N7ZBK5   A0A195C6Y1   C3YUN5   A0A3R7PU50   E2A9M0   C3Z8N1   A0A1S3ILI1   A0A1S3ILZ4   X1WJ75   A0A1S3INI8   A0A1Z5KWS2   A0A1D2NKF9   A0A131Y0V4   A0A0P5V8E2   A0A210PU67   A0A2R5LMG4   A0A090X8F8   A0A3P9I9E0   A0A293LWX7   A0A0P5FW72   A0A0N8CLM2   A0A0P5D9N6   A0A0P5ZGA0   A0A0P6BDA7   A0A3P9KR43   H2MPQ3   A0A3P9CET6   A0A0N8C529   I3JH67   A0A0N8CAH9   A0A2T7PAB9   W5MZ29   A0A3B4H0B2   A0A3Q2X1F3   A0A3P8P0G1   A0A0P6FCQ2   A0A0P5RM25   A0A3Q1GPE2   A0A0P6DJD4   A0A0P6DTT7   A0A0P6FKK7   A0A0P5PX41   A0A3Q1HKV4   A0A0P6FJ47   A0A0P5MDJ9  

Pubmed

26354079    22118469    24845553    28004739    18362917    19820115    + More
20798317    28648823    27129103    25474469    20075255    24508170    30249741    25401762    26823975    21347285    21719571    21282665    20566863    18563158    28528879    27289101    28812685    25970599    17554307    25186727   

EMBL

ODYU01007465    SOQ50265.1    NWSH01000074    PCG79927.1    PCG79928.1    KQ459595    + More
KPI95792.1    KQ460367    KPJ15448.1    AGBW02008930    OWR52156.1    KK852804    KDR16180.1    NEVH01008208    PNF34611.1    PNF34614.1    PNF34613.1    GEDC01005678    JAS31620.1    GEDC01024751    JAS12547.1    GEBQ01019925    JAT20052.1    GECU01022784    GECU01008675    JAS84922.1    JAS99031.1    GECZ01001584    JAS68185.1    GBYB01000729    GBYB01000730    JAG70496.1    JAG70497.1    KQ759851    OAD62560.1    KQ435127    KZC14807.1    KQ414727    KOC62484.1    GEZM01094054    GEZM01094053    JAV55967.1    KQ435821    KOX72418.1    KZ288215    PBC32538.1    KQ971371    EFA10726.1    GL448558    EFN84236.1    NNAY01000120    OXU30787.1    GDKW01001086    JAI55509.1    KQ971365    KYB25657.1    GBBI01002041    JAC16671.1    KK107503    EZA49619.1    QOIP01000006    RLU21193.1    GBHO01002273    JAG41331.1    GBHO01002275    JAG41329.1    GDHC01006226    JAQ12403.1    ACPB03021149    LBMM01000604    KMQ97975.1    ADTU01013072    KQ976424    KYM88492.1    GL888551    EGI59606.1    KQ982548    KYQ55293.1    KQ981153    KYN08987.1    KQ981993    KYN30803.1    GL763054    EFZ20281.1    LJIG01009610    KRT82735.1    DS235779    EEB16892.1    GGMS01017632    MBY86835.1    GDRN01082118    GDRN01082117    JAI61904.1    KQ978251    KYM95923.1    GG666554    EEN55936.1    QCYY01001566    ROT77125.1    GL437918    EFN69822.1    GG666594    EEN51136.1    ABLF02029453    GFJQ02007413    JAV99556.1    LJIJ01000022    ODN05456.1    GEFM01004285    JAP71511.1    GDIP01105628    GDIP01105627    JAL98086.1    NEDP02005493    OWF40005.1    GGLE01006568    MBY10694.1    GBIH01002741    JAC91969.1    GFWV01013248    MAA37977.1    GDIQ01253134    JAJ98590.1    GDIP01119671    JAL84043.1    GDIP01164544    JAJ58858.1    GDIP01045044    LRGB01000389    JAM58671.1    KZS19408.1    GDIP01030948    JAM72767.1    GDIQ01114027    JAL37699.1    AERX01023930    GDIQ01098827    JAL52899.1    PZQS01000005    PVD30358.1    AHAT01004624    GDIQ01061891    JAN32846.1    GDIQ01098826    JAL52900.1    GDIQ01076633    JAN18104.1    GDIQ01076634    JAN18103.1    GDIQ01048157    JAN46580.1    GDIQ01122176    JAL29550.1    GDIQ01063600    JAN31137.1    GDIQ01165415    JAK86310.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000027135    UP000235965    + More
UP000076502    UP000005203    UP000053825    UP000053105    UP000242457    UP000007266    UP000192223    UP000008237    UP000215335    UP000002358    UP000053097    UP000279307    UP000015103    UP000036403    UP000005205    UP000078540    UP000007755    UP000075809    UP000078492    UP000078541    UP000009046    UP000078542    UP000001554    UP000283509    UP000000311    UP000085678    UP000007819    UP000094527    UP000242188    UP000265200    UP000076858    UP000265180    UP000001038    UP000265160    UP000005207    UP000245119    UP000018468    UP000261460    UP000264840    UP000265100    UP000257200    UP000265040   

Pfam

PF17034   zinc_ribbon_16        + More
PF00728   Glyco_hydro_20

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR031488   Zn_ribbon_mio       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037593   MIOS/Sea4       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR003657   WRKY_dom       
IPR015883   Glyco_hydro_20_cat       
IPR038901   HEXDC-like       
IPR017853   Glycoside_hydrolase_SF       

SUPFAM

SSF50978   SSF50978        + More
SSF51445   SSF51445       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2H1WB06   A0A2A4K6R2   A0A2A4K7L7   A0A194PR54   A0A194RC80   A0A212FEH8   + More
A0A067R031   A0A2J7R195   A0A2J7R1C2   A0A2J7R1A2   A0A1B6E123   A0A1B6CGC5   A0A1B6L8L7   A0A1B6IDD1   A0A1B6H0J4   A0A0C9QYF2   A0A310SSH7   A0A154PSS2   A0A087ZWD8   A0A0L7QV95   A0A1Y1KB36   A0A0N0BEV0   A0A2A3ELD9   D6X052   A0A1W4XSV9   E2BJ86   A0A232FKD7   A0A0P4VU12   A0A139WCL5   A0A023F548   K7IYZ6   A0A026W3K6   A0A3L8DLU9   A0A0A9ZBQ5   A0A0A9ZA57   A0A146LXW2   T1HA87   A0A0J7NZZ8   A0A158NDY1   A0A195BPP5   F4X1U9   A0A151X4E6   A0A195D806   A0A195ERF4   E9IGT8   A0A0T6B5S4   E0VU36   A0A2S2RA21   A0A0N7ZBK5   A0A195C6Y1   C3YUN5   A0A3R7PU50   E2A9M0   C3Z8N1   A0A1S3ILI1   A0A1S3ILZ4   X1WJ75   A0A1S3INI8   A0A1Z5KWS2   A0A1D2NKF9   A0A131Y0V4   A0A0P5V8E2   A0A210PU67   A0A2R5LMG4   A0A090X8F8   A0A3P9I9E0   A0A293LWX7   A0A0P5FW72   A0A0N8CLM2   A0A0P5D9N6   A0A0P5ZGA0   A0A0P6BDA7   A0A3P9KR43   H2MPQ3   A0A3P9CET6   A0A0N8C529   I3JH67   A0A0N8CAH9   A0A2T7PAB9   W5MZ29   A0A3B4H0B2   A0A3Q2X1F3   A0A3P8P0G1   A0A0P6FCQ2   A0A0P5RM25   A0A3Q1GPE2   A0A0P6DJD4   A0A0P6DTT7   A0A0P6FKK7   A0A0P5PX41   A0A3Q1HKV4   A0A0P6FJ47   A0A0P5MDJ9  

PDB

4BZK     E-value=0.00966511,     Score=94

KEGG

101744741    K20407 WD repeat-containing protein mio | (RefSeq) WD repeat-containing protein mio

PATHWAY

04150    mTOR signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0034198   GO:0032008   GO:0005737   GO:0005975   GO:0003700   GO:0015929   GO:0016021   GO:0043565   GO:0005515   GO:0005524   GO:0005694   GO:0051276   GO:0008083   GO:0006003   GO:0006032   GO:0016742   GO:0003824  

PANTHER

PTHR16453   PTHR21040  

Length:

639

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00784999999999999

Exp number, first 60 AAs:

0.00168

Total prob of N-in:

0.00030

outside

1  -  639

 

 

Pi

2.929314

Theta

5.123212

Tajima's D

-1.899671

CLR

34.182397

CSRT

0.0173491325433728

Interpretation

Uncertain