Gene

KWMTBOMO04816

Pre Gene Modal

BGIBMGA009832

Annotation

PREDICTED:_WD_repeat-containing_protein_mio_[Bombyx_mori]

Location

Bomo_Chr8(-):15804764-15807021      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.641 PlasmaMembrane   Reliability : 1.041

CDS

ATGCGGCTGGAGGACCGCGTGGCCTTCGCCTGCATGTTCCTGTCGGACGGCAAGCTGCACGAGTACGTGCGACACACGGCCGACGCGCTCGTGCAGCGCGGGGACCTGTCCGGCGTGCTGCTCACCGGGGCCGGCGCGGAGGGCGCGGCGCTGCTGCAGCACTGGCTGGACGCGAGCGGCGACGTGCAGAGTGCCGCCCTGCTGGCCGCGCGCTGCTTCACGCCGGAGCTGCTGGCCCTGCCGCACGTGCAGCACTGGCTCGACAGCTACCGCGGGCTGCTGGACGGCTGGCGGCTGTGGTGGGCTCGCTGCGCGCTGGACACGTGGGTGTGCGGGGGCAGCGCCGCGGCCGCCGTGCGCCACGTGTGCGTGGCCTGCACCTACTGCGGCAAGTCCGTGGCGGCGGCCGCGGGGGCCCGGCCTCGCCCGCCGCTCGCGCGCCTTCCGCCGCCCGCCGCCAAGATGAAGTTATAA

Protein

MRLEDRVAFACMFLSDGKLHEYVRHTADALVQRGDLSGVLLTGAGAEGAALLQHWLDASGDVQSAALLAARCFTPELLALPHVQHWLDSYRGLLDGWRLWWARCALDTWVCGGSAAAAVRHVCVACTYCGKSVAAAAGARPRPPLARLPPPAAKMKL

Uniprot

H9JJY1   A0A2A4K6R2   A0A2A4K7L7   A0A2H1WB06   A0A194PR54   A0A194RC80   + More
A0A2J7R195   A0A1B6DV09   A0A0P4VU12   T1HA87   A0A2J7R1C2   A0A023F548   A0A067R031   A0A310SSH7   A0A154PSS2   A0A2J7R1A2   E2BJ86   A0A0L7QV95   A0A087ZWD8   A0A0N0BEV0   A0A2P8XNN0   A3EXU2   A0A2R7WBR2   A0A0T6B646   A0A232FKD7   K7IYZ6   A0A0C9QYF2   A0A3L8DLU9   A0A026W3K6   A0A1B6IDD1   A0A182NTL4   A0A2A3ELD9   A0A090X8F8   A0A131Y0V4   A0A182SSP2   A0A182TH16   A0A182UZQ8   A0A182WT25   Q7Q3Q5   A0A182HV22   A0A182L1X6   A0A182PD22   A0A182QC04   A0A224Z3Q8   A0A131Z3L6   A0A084W5Z5   A0A182H9K1   W5JJE5   A0A2M4BDH1   A0A182G050   B0X0X2   A0A1W0WR72   A0A0A9ZBQ5   A0A0A9ZA57   A0A0A9ZGX3   A0A146LXW2   E9GAV5   A0A1E1XLA8   T2M3U9   N6UKH4   A0A182J3E5   B3MJA8   R7V9C9  

Pubmed

19121390    26354079    27129103    25474469    24845553    20798317    + More
29403074    28648823    20075255    30249741    24508170    25970599    12364791    14747013    17210077    20966253    28797301    26830274    24438588    26483478    20920257    23761445    25401762    26823975    21292972    29209593    24065732    23537049    17994087    23254933   

EMBL

BABH01026733    BABH01026734    BABH01026735    NWSH01000074    PCG79927.1    PCG79928.1    + More
ODYU01007465    SOQ50265.1    KQ459595    KPI95792.1    KQ460367    KPJ15448.1    NEVH01008208    PNF34611.1    GEDC01007796    JAS29502.1    GDKW01001086    JAI55509.1    ACPB03021149    PNF34614.1    GBBI01002041    JAC16671.1    KK852804    KDR16180.1    KQ759851    OAD62560.1    KQ435127    KZC14807.1    PNF34613.1    GL448558    EFN84236.1    KQ414727    KOC62484.1    KQ435821    KOX72418.1    PYGN01001637    PSN33611.1    EF092010    ABN12002.1    KK854536    PTY16671.1    LJIG01009609    KRT82737.1    NNAY01000120    OXU30787.1    GBYB01000729    GBYB01000730    JAG70496.1    JAG70497.1    QOIP01000006    RLU21193.1    KK107503    EZA49619.1    GECU01022784    GECU01008675    JAS84922.1    JAS99031.1    KZ288215    PBC32538.1    GBIH01002741    JAC91969.1    GEFM01004285    JAP71511.1    AAAB01008964    EAA12402.4    APCN01002490    AXCN02000795    GFPF01013362    MAA24508.1    GEDV01002558    JAP85999.1    ATLV01020706    KE525305    KFB45639.1    JXUM01120948    JXUM01120949    JXUM01120950    KQ566446    KXJ70131.1    ADMH02001321    ETN63020.1    GGFJ01001959    MBW51100.1    DS232248    EDS38364.1    MTYJ01000057    OQV17689.1    GBHO01002273    JAG41331.1    GBHO01002275    JAG41329.1    GBHO01002274    JAG41330.1    GDHC01006226    JAQ12403.1    GL732537    EFX83477.1    GFAA01003441    JAT99993.1    HAAD01000731    CDG66963.1    APGK01029531    KB740735    KB631642    ENN79182.1    ERL84911.1    CH902620    EDV31318.1    AMQN01000653    KB293808    ELU15458.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000235965    UP000015103    + More
UP000027135    UP000076502    UP000008237    UP000053825    UP000005203    UP000053105    UP000245037    UP000215335    UP000002358    UP000279307    UP000053097    UP000075884    UP000242457    UP000075901    UP000075902    UP000075903    UP000076407    UP000007062    UP000075840    UP000075882    UP000075885    UP000075886    UP000030765    UP000069940    UP000249989    UP000000673    UP000069272    UP000002320    UP000000305    UP000019118    UP000030742    UP000075880    UP000007801    UP000014760   

PRIDE

H9JJY1   

Pfam

PF17034   zinc_ribbon_16

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR037593   MIOS/Sea4       
IPR031488   Zn_ribbon_mio       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JJY1   A0A2A4K6R2   A0A2A4K7L7   A0A2H1WB06   A0A194PR54   A0A194RC80   + More
A0A2J7R195   A0A1B6DV09   A0A0P4VU12   T1HA87   A0A2J7R1C2   A0A023F548   A0A067R031   A0A310SSH7   A0A154PSS2   A0A2J7R1A2   E2BJ86   A0A0L7QV95   A0A087ZWD8   A0A0N0BEV0   A0A2P8XNN0   A3EXU2   A0A2R7WBR2   A0A0T6B646   A0A232FKD7   K7IYZ6   A0A0C9QYF2   A0A3L8DLU9   A0A026W3K6   A0A1B6IDD1   A0A182NTL4   A0A2A3ELD9   A0A090X8F8   A0A131Y0V4   A0A182SSP2   A0A182TH16   A0A182UZQ8   A0A182WT25   Q7Q3Q5   A0A182HV22   A0A182L1X6   A0A182PD22   A0A182QC04   A0A224Z3Q8   A0A131Z3L6   A0A084W5Z5   A0A182H9K1   W5JJE5   A0A2M4BDH1   A0A182G050   B0X0X2   A0A1W0WR72   A0A0A9ZBQ5   A0A0A9ZA57   A0A0A9ZGX3   A0A146LXW2   E9GAV5   A0A1E1XLA8   T2M3U9   N6UKH4   A0A182J3E5   B3MJA8   R7V9C9  

KEGG

101744741    K20407 WD repeat-containing protein mio | (RefSeq) WD repeat-containing protein mio

GO

GO:0005737   GO:0032008   GO:0034198   GO:0016021   GO:0007293   GO:0040020   GO:0061700   GO:0030716   GO:0010508   GO:0010507   GO:0044754   GO:0001674   GO:0045793   GO:0009994   GO:0006302   GO:1904263  

PANTHER

PTHR16453  

Length:

157

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13365

Exp number, first 60 AAs:

0.03355

Total prob of N-in:

0.17582

outside

1  -  157

 

 

Pi

3.630651

Theta

11.465629

Tajima's D

-1.75315

CLR

0.149696

CSRT

0.0306984650767462

Interpretation

Uncertain