Silkworm Genome Informatics Database

Gene

KWMTBOMO04814

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(-):15707524-15707971 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.064 Mitochondrial Reliability : 1.355 Nuclear Reliability : 1.746

CDS

ATGGAGGAAACCAGAATGCTAAGACAACTACTATATGGCAAACCAGAGGGCCGGAGACGTCGTGACAGACCCAAACTCCGATGGTTGGATGGCGTAGAGGACGACCTTAAAGTTGTCGATGTCAAGAACTGGAATGAGAAATCCCTGAACAGAGCAGTCTCGAGAGACATACTGGACCAGGCTAAGGCCCATCCTGAACTGTAA

Protein

MEETRMLRQLLYGKPEGRRRRDRPKLRWLDGVEDDLKVVDVKNWNEKSLNRAVSRDILDQAKAHPEL

Uniprot

D7F170 T1HWQ9

Pubmed

20470440

EMBL

FJ265555 ADI61823.1 ACPB03020582 ACPB03020583 ACPB03020584 ACPB03020585 + More
ACPB03020586

Proteomes

UP000015103

PRIDE

D7F170

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF01386   Ribosomal_L25p

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR020056   Rbsml_L25/Gln-tRNA_synth_N
IPR011035   Ribosomal_L25/Gln-tRNA_synth
IPR029751   Ribosomal_L25

SUPFAM

SSF56219 SSF56219 + More
SSF50715 SSF50715

Gene 3D

3.60.10.10 2.40.240.10

CDD

cd00495 Ribosomal_L25_TL5_CTC

ProteinModelPortal

D7F170 T1HWQ9

KEGG

101744029 no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003964 GO:0004519 GO:0003735 GO:0008097 GO:0006412 GO:0005840

Length:

67

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.39962

outside

1 - 67

Pi

44.855021

Theta

32.137177

Tajima's D

1.077447

CLR

0

CSRT

0.68271586420679

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree