Gene

KWMTBOMO04811  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009835

Annotation

PREDICTED:_structural_maintenance_of_chromosomes_protein_1A_[Papilio_xuthus]

Location

Bomo_Chr8(-):15652674-15673311      View in EpiBrowser

Full name

Structural maintenance of chromosomes protein      

Location in the cell

Nuclear   Reliability : 2.574

CDS

ATGCCTGCGTTTCTTAAATATATCGATATGGAAAATTTCAAGACCTATAGAGGACATCACCGCATAGGTCCTCTGAAGTCTTTTACCGCTGTTGTTGGCCCTAATGGATCAGGAAAGTCCAACTTCATGGACGCTGTGAGCTTTGTGATGGGTGAGAAGACATCATTGTTGCGTGTGAAGAGGTTGAGTGACTTGATCCATGGTGCTTCAATCAACAAACCTGTTTCTCGAAGTGCATCTGTTACGGCAACGTTTGTTCTGGAAGACATGACTGAGAAACATTTCCAGAGATCAGTGATTGGACAATCGTCTGAACATAAAATTGATGGCCAGTCTGTATCAGTAAGTAACTATCTTGGTGAACTAGAGAAATTGGGCATCAATGTGAAAGCCAAGAACTTCCTAGTCTTCCAGGGTGCCGTCGAGAGCATTGCCATGAAGAATCCTAAAGAAAGGACTACTCTGTTTGAGGAGATCAGCGGGTCTGGAGTGTTAAAGGAACAGTATGAAGCTTGCCGTGCTGAAGTAAACCGAGCTGATGAGGAGGCTCAATTCTCCTATCAGAAAAAGAAGGGAGTGGCAGCTGAGAGGAAAGAAGCAAAGTTTGAGAAGGAAGAAGCGGAGAAATACACAAGACTTAAGCAAGAATTGCAAGAGCAAAAAGTGGAACTTCAACTTTTCCATCTGTATCACAACGAGAGAGAGATCCAGGCTTATGAAGAAGATTTGCAACACAAACAACAAGAATTAGCAAAAATTGAGAAGAAAAGACAGAAGGCTGAAGAAGCATTAAAGGAAAAGAAAAAAGAAGCCGGAACCGTACAGAGAGAGCTCGCAAAGATTGAACAGGACATTAGGGAAGTGGAAGCAGAGATTTCAAAAAAACGACCAACTTTCATAAAAGCAAAAGAACGAGTCACTCACACCCAGAAGAAGCTTGAAAGTGCTCAAAAGACATTAGAACAAGCGCGGAAAGCTCATGAGGCCCATCAGGATGACATCAGGACTTTGGAGGAGGAGCTTAGAACCTTGGAGCAGCAAAAGGCAACATGGGAAACAGCTAGTGGTACCGGTCACAGTGGGAAGGCTGATGTACATTTGGAGGAGGCCCAGATCCGTGAATATGAAGAGCTGAAGATGGAAGCATCCCGTCAGGCAGCTCGCTACCTCCAGGAACTGGATTCCGTGAATAGGGAACAGAAGGCAGACCAGGATCGTCTGGACAATGAGCTGAGGAAGAAGGGAGAGCTGGAAAACAAGCATCGGCAGAAGGGGCACGAGAGAAACGAAGCTGTGAAGAGAGTGGACAAACTAAATGAACACATCAAGAGTTCGGAACAGGCCCTTGAGGAACAGAGGAGACTACGAGCTGAATTACAGGCGGACGTGGGTTCGTGCCGCGGGCGGGCCGCCAGCCTGCAGACGCAGCTGGAGGACGTGGCGGCGCAGCTGGGCGACGCGCGCGTGGACAAGCACGAGGAGGCGCGCCGCAGGAAGAAGCAGGAGATCGTCGAGAGCTTCAAGCGAGACATCCCCGGGGTTTACGACAGAATGATCAACATGTGCCAGCCGACCCACAAAAGGTACAACGTGGCCATCACCAAGGTCCTCGGGAAGTACATGGAAGCTATCGTGGTGGACACCGAGAAGACAGCCCGGAGGTGTATCCAGGTGCTGAAAGAAAGAATGCTGGAACCGGAGACTTTCCTCCCCCTGGACTACATACAGGCCAAACCGCTGCGGGAGAGACTGAGAGACATAAAGGAGCCCAAGAACGTGAAGCTGCTGTTCGACGTGCTCCGCTTCGAGCCGGCCGCCATCCACCGCGCCGTGCTCTTCGTCACCAACAACGCGCTCGTGTGCGAGACCCCCGAGGACGCGTCGCGCGTCGCCTACGACCTCGACCGGAACAAGAACAGCAGATACGATGCGCTGGCGCTGGACGGCACGTTCTACCAGAAGTCTGGCATCATATCGGGGGGCTCGTTGGATCTGGCGAGGAAAGCTAAACGATGGGACGAGAAGCATCTTTCACAGCTTAAAGCTAAAAAGGAGAAGCTAACAGAAGAGCTCCGGGAGTCGATGAAGAAGTCCCGCAAGGAGTCGGAGCTGACCACCGTAGACTCGCAGATCCGGGGGCTCGAGTCCAGACTCAAGTACGCCGTCACCGACAGGGACACCACCTTAAAACAAATTAAGACGTTGGATGCTGAGATCGTTGAGCTGGAGAGAAAGATGGAAACTTTTGGGCCTCAGATCGAGGAGATCGAGCGCACCATCCGGCTGCGCGACGCCAAGATCCAGGAGGTGAAGGAGAACATGAACAACGTGGAGGACGTCGTGTTCAAGGCGTTCTGTCGGGACATCGGCGTCGCCAACATCCGACAGTACGAGGAGCGCGAGCTGCGCGCCCAGCAGGAGCGCGCCAAGCGGCGGATGGAGTTTGAAGCGCAAATCGACAGGGTCGCCTCCAACCTGGAGTTCGAGCGATCCCGGGACACGCAGAAGAACGTGACGCGGTGGGAGCGCGCGGTGCAGGACGCCGAGGACGAGCTGGAGGGCGGGCGCCAGGCGGAGGCCAAGCAGCGCGCCGACATCGACCACGAGCTGCGCCGCGCCGACACGCTCAAGGCGGACCGGGCCGCCGCGCGCACGCACCTCGAGAAGGCGGAGGAGGACGTCAACAAGGCGCGGAAAGAGGTGTCCAGCATCCAGAAGGACATCCAGAGCGTCCAGAAGCAGATGGCCAGCATCGAGGCGCGCATCGAGAGCAAGCGCAGCGAGCGACACAACATACTGCGGCAGTGCAAGATCGATGACATAATAATACCCTTATTGGAGGGTAGCCTAGACGACACGGCCGACACGGAGTCCGACCCCTCCTCCATGTCCACCACGCAGCAGTACAGGAAGGAATCCAGGATTCGTGTGGACTACAGCATGCTGTCGGACAGCCTGCGCGACCTGGAGGAGGCCGACGAGGTCCGGCGCCGCGCGGACAAGCTGCAGAAGGCGATCAACTCCCTGCAGACGACCGTCGACAAGATCCAGGCGCCCAACATGCGGGCCATGCAGAAGCTGACGGAGGTGCGGGAGAAGGTGAACGCTACCAACGAGGCCTTCGTGGCGGCGAGGAAGCGCGCGCACCGCGCCAAGCTCGCCTTCGAGAAGGTGAAGAAGGAGCGCCACGACAAGTTCATGGACTGCTTCGAGCACGTCGCCAACGAGATCGACGCCATCTACAAGGCGCTGGCGATGAACCAGTCGGCGCAGGCGTTCCTGGGTCCCGAGAACCCCGAGGAGCCGTACCTGGACGGCATCAACTACAACTGCGTGGCGCCCGGGAAGCGCTTCCAGCCCATGTCCAACCTCTCCGGCGGGGAGAAGACGGTGGCCGCGCTAGCGCTGCTGTTCGCCATCCACAGCTACCAGCCGGCGCCGTTCTTTCTGCTGGACGAGATAGACGCGGCCCTGGACAACACCAACATAGGCAAGGTCGCCTCCTACATCCGCTCCAAGAAGGGCTGTCTGCAGACCATCGTCATCTCGCTCAAGGAGGAGTTCTATGGGTGCGCCGATGCGCTGGTCGGCATCTGCTCGGAGCCGGCGGACTGCCTCGTGAGTGACGTCATCACCCTCAGCCTGGAGAACTACGCGGATTAG

Protein

MPAFLKYIDMENFKTYRGHHRIGPLKSFTAVVGPNGSGKSNFMDAVSFVMGEKTSLLRVKRLSDLIHGASINKPVSRSASVTATFVLEDMTEKHFQRSVIGQSSEHKIDGQSVSVSNYLGELEKLGINVKAKNFLVFQGAVESIAMKNPKERTTLFEEISGSGVLKEQYEACRAEVNRADEEAQFSYQKKKGVAAERKEAKFEKEEAEKYTRLKQELQEQKVELQLFHLYHNEREIQAYEEDLQHKQQELAKIEKKRQKAEEALKEKKKEAGTVQRELAKIEQDIREVEAEISKKRPTFIKAKERVTHTQKKLESAQKTLEQARKAHEAHQDDIRTLEEELRTLEQQKATWETASGTGHSGKADVHLEEAQIREYEELKMEASRQAARYLQELDSVNREQKADQDRLDNELRKKGELENKHRQKGHERNEAVKRVDKLNEHIKSSEQALEEQRRLRAELQADVGSCRGRAASLQTQLEDVAAQLGDARVDKHEEARRRKKQEIVESFKRDIPGVYDRMINMCQPTHKRYNVAITKVLGKYMEAIVVDTEKTARRCIQVLKERMLEPETFLPLDYIQAKPLRERLRDIKEPKNVKLLFDVLRFEPAAIHRAVLFVTNNALVCETPEDASRVAYDLDRNKNSRYDALALDGTFYQKSGIISGGSLDLARKAKRWDEKHLSQLKAKKEKLTEELRESMKKSRKESELTTVDSQIRGLESRLKYAVTDRDTTLKQIKTLDAEIVELERKMETFGPQIEEIERTIRLRDAKIQEVKENMNNVEDVVFKAFCRDIGVANIRQYEERELRAQQERAKRRMEFEAQIDRVASNLEFERSRDTQKNVTRWERAVQDAEDELEGGRQAEAKQRADIDHELRRADTLKADRAAARTHLEKAEEDVNKARKEVSSIQKDIQSVQKQMASIEARIESKRSERHNILRQCKIDDIIIPLLEGSLDDTADTESDPSSMSTTQQYRKESRIRVDYSMLSDSLRDLEEADEVRRRADKLQKAINSLQTTVDKIQAPNMRAMQKLTEVREKVNATNEAFVAARKRAHRAKLAFEKVKKERHDKFMDCFEHVANEIDAIYKALAMNQSAQAFLGPENPEEPYLDGINYNCVAPGKRFQPMSNLSGGEKTVAALALLFAIHSYQPAPFFLLDEIDAALDNTNIGKVASYIRSKKGCLQTIVISLKEEFYGCADALVGICSEPADCLVSDVITLSLENYAD

Similarity

Belongs to the SMC family.

Uniprot

H9JJY4   A0A2H1WK95   A0A194PS52   A0A2A4K815   S4PM86   A0A212FGH0   + More
A0A194RCU8   A0A2J7QPR3   A0A067RHM4   E2B6C3   D6WWY2   A0A1Y1MWJ6   A0A291S6X4   A0A026VXY9   E2ABT2   A0A0N0BGL5   A0A1W4XLN4   A0A2A3EF39   A0A087ZYL5   F4W8Y1   A0A158NP42   A0A151ILC7   A0A232FFB6   A0A195F0V4   A0A0P4VW93   A0A195DWT6   A0A1B6LYD5   J9K5B6   A0A2H8TVT0   A0A2S2QIB6   A0A2P2I4S7   A0A164WFH0   A0A0N8DB39   A0A0A9YLV3   A0A0P5SIA5   E9GJ33   A0A182J865   E0VVX1   A0A182H986   U4UN83   U5EXJ4   Q8I954   A0A1S4FBX8   Q178Q7   A0A2M4A9V7   A0A2M4BA64   A0A1B6DY45   A0A0L7QJS8   A0A182M1K9   A0A069DXE1   B0WY22   Q7QD42   A0A1Q3F7A2   A0A2M4CUI9   A0A336MXJ1   A0A182UWW2   A0A0V0G5N2   A0A1J1J8I8   A0A3F2YTY7   A0A182Q7V9   A0A1A9UFQ4   W8C8Y2   A0A1A9XRG2   A0A1B0BVV1   A0A1A9ZA09   A0A034W888   A0A0K8UST1   T1P898   T1I0K2   A0A1I8PIF5   A0A1B0FIR3   B3MST3   A0A0A1WHM9   A0A1B0D6M0   A0A0L0BMS7   A0A3B0JK50   Q9VCD8   A0A182LG27   Q298K8   A0A1W4V5M0   A0A0K8UKN7   Q9N6I4   B3P7A0   B4PL25   B4NBN8   B4MBZ5   B4G429   B4K7D0   A0A0M4EQU7   B4JIH2   N6TQU0   A0A0P5YC08   A0A151X8F7   A0A0K2U3J1   A0A131YK12   A0A131XJX2   L7M269   A0A224Z568   A0A131YDX8   A0A224Z9C4  

Pubmed

19121390    26354079    23622113    22118469    24845553    20798317    + More
18362917    19820115    28004739    28992199    24508170    30249741    21719571    21347285    28648823    25401762    26823975    21292972    20566863    26483478    23537049    14660695    17510324    26334808    12364791    14747013    17210077    24495485    25348373    25315136    17994087    25830018    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20966253    15632085    10806064    17550304    26830274    28049606    25576852    28797301   

EMBL

BABH01026721    BABH01026722    ODYU01009232    SOQ53503.1    KQ459595    KPI95793.1    + More
NWSH01000074    PCG79933.1    GAIX01003710    JAA88850.1    AGBW02008669    OWR52835.1    KQ460367    KPJ15447.1    NEVH01012088    PNF30565.1    KK852678    KDR18667.1    GL445930    EFN88816.1    KQ971361    EFA08076.1    GEZM01019965    JAV89508.1    MF433016    ATL75367.1    KK107648    QOIP01000008    EZA48341.1    RLU19352.1    GL438356    EFN69109.1    KQ435775    KOX74954.1    KZ288262    PBC30375.1    GL887974    EGI69340.1    ADTU01022022    ADTU01022023    KQ977120    KYN05557.1    NNAY01000289    OXU29451.1    KQ981891    KYN33787.1    GDRN01103626    GDRN01103625    JAI58049.1    KQ980167    KYN17370.1    GEBQ01011284    JAT28693.1    ABLF02028753    ABLF02028757    GFXV01006551    MBW18356.1    GGMS01008271    MBY77474.1    IACF01003421    LAB69037.1    LRGB01001253    KZS13214.1    GDIP01051135    GDIQ01002820    JAM52580.1    JAN91917.1    GBHO01009557    GDHC01006499    JAG34047.1    JAQ12130.1    GDIP01139427    JAL64287.1    GL732547    EFX80555.1    DS235815    EEB17527.1    JXUM01030067    JXUM01030068    JXUM01030069    JXUM01030070    KQ560872    KXJ80531.1    KB632395    ERL94587.1    GANO01000922    JAB58949.1    AJ535203    CAD59403.1    CH477360    EAT42684.1    GGFK01004077    MBW37398.1    GGFJ01000804    MBW49945.1    GEDC01006700    JAS30598.1    KQ415041    KOC58863.1    AXCM01001293    GBGD01000156    JAC88733.1    DS232179    EDS36832.1    AAAB01008859    EAA07609.3    GFDL01011601    JAV23444.1    GGFL01004771    MBW68949.1    UFQT01001447    SSX30608.1    GECL01002748    JAP03376.1    CVRI01000070    CRL07225.1    AXCN02001200    GAMC01002634    JAC03922.1    JXJN01021483    GAKP01008028    JAC50924.1    GDHF01022592    JAI29722.1    KA644824    AFP59453.1    ACPB03018149    CCAG010023921    CH902623    EDV30323.1    GBXI01015945    JAC98346.1    AJVK01012086    AJVK01012087    AJVK01012088    JRES01001712    KNC20569.1    OUUW01000007    SPP82724.1    AE014297    AY118636    AAF56231.1    AAM50005.1    CM000070    EAL27947.2    GDHF01025077    JAI27237.1    AF225909    AJ271845    AAF43149.1    CAB76376.1    CH954182    EDV53920.1    CM000160    EDW99010.1    CH964232    EDW81202.1    CH940656    EDW58616.1    CH479179    EDW24440.1    CH933806    EDW14254.1    CP012526    ALC47438.1    CH916369    EDV93053.1    APGK01024336    APGK01024337    KB740543    ENN80428.1    GDIP01061285    JAM42430.1    KQ982422    KYQ56614.1    HACA01015478    CDW32839.1    GEDV01009715    JAP78842.1    GEFH01002151    JAP66430.1    GACK01006909    JAA58125.1    GFPF01012093    MAA23239.1    GEDV01012291    JAP76266.1    GFPF01012094    MAA23240.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000053240    UP000235965    + More
UP000027135    UP000008237    UP000007266    UP000053097    UP000279307    UP000000311    UP000053105    UP000192223    UP000242457    UP000005203    UP000007755    UP000005205    UP000078542    UP000215335    UP000078541    UP000078492    UP000007819    UP000076858    UP000000305    UP000075880    UP000009046    UP000069940    UP000249989    UP000030742    UP000008820    UP000053825    UP000075883    UP000002320    UP000007062    UP000075903    UP000183832    UP000075881    UP000075886    UP000078200    UP000092443    UP000092460    UP000092445    UP000095301    UP000015103    UP000095300    UP000092444    UP000007801    UP000092462    UP000037069    UP000268350    UP000000803    UP000075882    UP000001819    UP000192221    UP000008711    UP000002282    UP000007798    UP000008792    UP000008744    UP000009192    UP000092553    UP000001070    UP000019118    UP000075809   

PRIDE

H9JJY4    Q9VCD8    Q9N6I4   

Pfam

PF06470   SMC_hinge        + More
PF02463   SMC_N

Interpro

IPR003395   RecF/RecN/SMC_N        + More
IPR027417   P-loop_NTPase       
IPR024704   SMC       
IPR010935   SMC_hinge       
IPR036277   SMC_hinge_sf       
IPR029683   SMC1A_metazoan       

SUPFAM

SSF75553   SSF75553        + More
SSF52540   SSF52540       

ProteinModelPortal

H9JJY4   A0A2H1WK95   A0A194PS52   A0A2A4K815   S4PM86   A0A212FGH0   + More
A0A194RCU8   A0A2J7QPR3   A0A067RHM4   E2B6C3   D6WWY2   A0A1Y1MWJ6   A0A291S6X4   A0A026VXY9   E2ABT2   A0A0N0BGL5   A0A1W4XLN4   A0A2A3EF39   A0A087ZYL5   F4W8Y1   A0A158NP42   A0A151ILC7   A0A232FFB6   A0A195F0V4   A0A0P4VW93   A0A195DWT6   A0A1B6LYD5   J9K5B6   A0A2H8TVT0   A0A2S2QIB6   A0A2P2I4S7   A0A164WFH0   A0A0N8DB39   A0A0A9YLV3   A0A0P5SIA5   E9GJ33   A0A182J865   E0VVX1   A0A182H986   U4UN83   U5EXJ4   Q8I954   A0A1S4FBX8   Q178Q7   A0A2M4A9V7   A0A2M4BA64   A0A1B6DY45   A0A0L7QJS8   A0A182M1K9   A0A069DXE1   B0WY22   Q7QD42   A0A1Q3F7A2   A0A2M4CUI9   A0A336MXJ1   A0A182UWW2   A0A0V0G5N2   A0A1J1J8I8   A0A3F2YTY7   A0A182Q7V9   A0A1A9UFQ4   W8C8Y2   A0A1A9XRG2   A0A1B0BVV1   A0A1A9ZA09   A0A034W888   A0A0K8UST1   T1P898   T1I0K2   A0A1I8PIF5   A0A1B0FIR3   B3MST3   A0A0A1WHM9   A0A1B0D6M0   A0A0L0BMS7   A0A3B0JK50   Q9VCD8   A0A182LG27   Q298K8   A0A1W4V5M0   A0A0K8UKN7   Q9N6I4   B3P7A0   B4PL25   B4NBN8   B4MBZ5   B4G429   B4K7D0   A0A0M4EQU7   B4JIH2   N6TQU0   A0A0P5YC08   A0A151X8F7   A0A0K2U3J1   A0A131YK12   A0A131XJX2   L7M269   A0A224Z568   A0A131YDX8   A0A224Z9C4  

PDB

2WD5     E-value=1.77136e-51,     Score=517

KEGG

101740265    K06636 structural maintenance of chromosome 1 | (RefSeq) structural maintenance of chromosomes prote

GO

GO:0005524   GO:0051276   GO:0005634   GO:0005694   GO:0010629   GO:0035327   GO:0005700   GO:0003682   GO:0016322   GO:0048813   GO:0016319   GO:0008278   GO:0046982   GO:0005515   GO:0008083   GO:0006003   GO:0006032   GO:0016742   GO:0003824  

PANTHER

PTHR18937:SF170  

Subcellular location

Nucleus  

Length:

1220

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03693

Exp number, first 60 AAs:

0.00119

Total prob of N-in:

0.00007

outside

1  -  1220

 

 

Pi

24.045292

Theta

22.448143

Tajima's D

0.594628

CLR

1.688965

CSRT

0.546322683865807

Interpretation

Uncertain