Silkworm Genome Informatics Database

Gene

KWMTBOMO04810 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009915

Annotation

PREDICTED:_rab_GTPase-binding_effector_protein_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr8(+):15639122-15651626 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.726 Nuclear Reliability : 1.35

CDS

ATGTCTGCCGAACAAACTGACACTGCCACAGAAGGTGGAGGCGAAGATAAAACATCGACTAAGGAGTTGCCTCGACGAGATTTAGAGGAAGAATTCAACGTTCAAAGGGCGAAAATGAAGGAACTATTTTTACAGAAAGAAGAAGACATGAGGAAAATGCTTCAAGATAAAGAACATTTAGAGTCAGAGGTGCTAAGCTTGAGAGCTGAATTACAGCAGTTGCAAACCCTCAGTGAAAATCAGAAATCTGAGATTCAAAGCTTACAGCTGCTTGTTAATGAAACTGTGGAGGCTTCCTCGTCTGGTACGGAGGAACTCCGCTGCCTGTCCAAACGGAACCTAGAGCTGGAGCAACAGATTCGGCAAATGCAGATACAGCAACAACAGCAGGAGGTGTCCCTGGCGCCGGCCACGTTGGTGCGCACCCTGGCCCGGAAGCTAGGGGCTGATGCTGAAGTGGAGCAGCCGATGAGGAGGAACATGGAGGACAACGAGCAGTCCATCATCGAGCCGCTGGAGCTGGAGATAGCAGCGCTCAAGAACAAGCTGCGAGAGACCGACACGCAGCTGCAGGAGGCGCTCAAAACACTGGCTGCGAGCCCGCCTACTGGCGCCGCGATGGATGGCAAAACTGACGGAGAGGTCCACAAGCAGTGCGACATGTGCGTGAACTACGAGAAGCAGCTGGTGGGCGAGCAGGCGCAGGCCGCGGCGGCGCGGGACCGGGCTACCGGCCTGGAGCAGGCCCTCGCACAGGCCACGGAGGAGCTGGAGGGCGTGCGCTCCCTGCACGACGAGACCGTGCGCGCCTGGCACGCCGCCCGCGCCGCCGCCGCCGCGCAGCTAGAGTTGAGTATTCGGGGCATGCAGGAGCTGGGCGCGGCCGTGTCGGCAGCCCGGGGCGCCGTGGCCGCCCGCGCCGAGCAGGCCAGCGCCGCCGCCCAGCGCGCGCTGCACCACGTCACCCTGCTCACCGTGGACCGGGAGACGCTGCAGGGGAAACTGGACAGCTTAGAAAGAGACAACGCGACGCTGCTGGGCCGCTACCTGAAGAAAGCGGAGGAGATGCAAAATGAAATTATCGACCTGCCCGACGACGTGCAGGAGCTGCAGGAGCTGACCCTCCGCCTCCGCGAGCAGCTGATCTCGTGCTGCCTGTCCCGCGAGCAGGCCGCCGCCGTGGAGCAGCAGCAGCGCCTCCAGCTGCTGCAGCAGTCCACCGCGCTCCAGCAGCACGAGGAGAGGGCGGCAGCACTGGCCGCGCAGCTGCACGCCGCTCAGGAGGAGCTGGACAAGCTGCAGACGGAGCGGTCCCAGATGAACGAGCTGGCTGACAAGCTGCGGCACTCCAACGACATGATCGAGGGGCTGCTGGAGGACAAGAAGCGGCTGCAGTCGGAGGCGGCAGAGATGCGCAGTCGCGTGGCGGCCCTGCAGCTGGAGCTGGACAACAGTGAGAAGGTGCAGCAGGACTTCGTCAGACTTTCGCAGTCTCTGCAGGTGCAGCTGCAGCGCATCAGGGAGGCGGACACGGAGGTGCGGTGGCAGCACGAGGACGACGTGCACGAGTGCCCGTCGTGCCGCCAGCCGCTGCCCAGCAACAAGAAGAAGGTGCACTGCCGGCACTGCGGGCGCATCTTCTGCGCGGCGTGCGTGAGTGCGCGCGTGCCCGCCGGCCCGCGCCGCCTGCCCGCGCGCGTGTGCTCCGTGTGCCGCACGCTGCTGCAGCCGCACGCCGCGCCCTACTTCTGCACGCAGCCGCCCTCCTCGCCGGACTAG

Protein

MSAEQTDTATEGGGEDKTSTKELPRRDLEEEFNVQRAKMKELFLQKEEDMRKMLQDKEHLESEVLSLRAELQQLQTLSENQKSEIQSLQLLVNETVEASSSGTEELRCLSKRNLELEQQIRQMQIQQQQQEVSLAPATLVRTLARKLGADAEVEQPMRRNMEDNEQSIIEPLELEIAALKNKLRETDTQLQEALKTLAASPPTGAAMDGKTDGEVHKQCDMCVNYEKQLVGEQAQAAAARDRATGLEQALAQATEELEGVRSLHDETVRAWHAARAAAAAQLELSIRGMQELGAAVSAARGAVAARAEQASAAAQRALHHVTLLTVDRETLQGKLDSLERDNATLLGRYLKKAEEMQNEIIDLPDDVQELQELTLRLREQLISCCLSREQAAAVEQQQRLQLLQQSTALQQHEERAAALAAQLHAAQEELDKLQTERSQMNELADKLRHSNDMIEGLLEDKKRLQSEAAEMRSRVAALQLELDNSEKVQQDFVRLSQSLQVQLQRIREADTEVRWQHEDDVHECPSCRQPLPSNKKKVHCRHCGRIFCAACVSARVPAGPRRLPARVCSVCRTLLQPHAAPYFCTQPPSSPD

Uniprot

H9JK64 A0A3S2NVN3 A0A194PQR1 A0A2A4K7P4 A0A212FGK4 A0A2A4K6P2 + More
A0A2H1WZQ5

Pubmed

19121390 26354079 22118469

EMBL

BABH01026720 BABH01026721 RSAL01000151 RVE45753.1 KQ459595 KPI95786.1 + More
NWSH01000074 PCG79934.1 AGBW02008669 OWR52833.1 PCG79935.1 ODYU01012277 SOQ58497.1

Proteomes

UP000005204 UP000283053 UP000053268 UP000218220 UP000007151

PRIDE

H9JK64

Pfam

PF01363   FYVE        + More
PF09311   Rab5-bind
PF03528   Rabaptin

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR017455   Znf_FYVE-rel
IPR011011   Znf_FYVE_PHD
IPR003914   Rabaptin
IPR001841   Znf_RING
IPR000306   Znf_FYVE
IPR015390   Rabaptin_Rab5-bd_dom
IPR018514   Rabaptin_coiled-coil

SUPFAM

SSF57903 SSF57903

Gene 3D

3.30.40.10

ProteinModelPortal

H9JK64 A0A3S2NVN3 A0A194PQR1 A0A2A4K7P4 A0A212FGK4 A0A2A4K6P2 + More
A0A2H1WZQ5

PDB

1JOC E-value=8.29099e-07, Score=128

KEGG

101739950 K12480 Rab GTPase-binding effector protein 1 | (RefSeq) rab GTPase-binding effector protein 1

PATHWAY

04144 Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0006897 GO:0005096 GO:0046872 GO:0008083 GO:0005515 GO:0008270 GO:0006003 GO:0006032 GO:0016742 GO:0003824

PANTHER

PTHR31179

Length:

592

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00215

outside

1 - 592

Pi

20.566181

Theta

20.519648

Tajima's D

-1.142955

CLR

1.011587

CSRT

0.114044297785111

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics