SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04806  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009911
Annotation
PREDICTED:_ubiquitin-like_modifier-activating_enzyme_1_isoform_X1_[Papilio_machaon]
Full name
DNA ligase      
Location in the cell
Cytoplasmic   Reliability : 2.975
 

Sequence

CDS
ATGTCTAGTGCTGAAGTCGCCGATAATTCCGTTGACCCCCCGGCGAAAAAGCGGAAACTAAATACAGGAGAAGCGCATTCGAACAACTCGGCAATGGCGAACAATGGAGCGCGCGTGGAAGATGAAATCGACGAGAGTCTGTACTCGCGCCAGCTCTACGTGCTGGGCCACGACGCTATGCGTCGAATGGCGAGTTCTGATGTCCTTATATCTGGCCTTGGCGGTTTAGGTGTCGAAATAGCGAAAAACGTTATCCTTGGTGGTGTAAAGTCGGTAACTTTGCATGACGACAAAAATTGCACCGTGGCTGATCTTTCCTCGCAGTTCTACCTTTCAGAGACTGTAATTGGTCAGAACAGGGCTTTAACATCGTGCGAACAACTTTCTGAACTGAACCACTATGTGCCCACTACTGCTTACACAGGACCTTTAACTGAAGACTTTTTGCGTAAGTTCCGTGTTGTGGTCCTCACAGGAGCATCGTGGGCTGAGCAGGAGCGAGTAGCTGCGTTCACTCACGCCAATAACATAGCATTGGTCATTGCTGATACTAGAGGCCTGTTCTCACAAGTGTTCTGTGACTTCGGACCAGAGTTTACGGTGTTAGATGTAAATGGAGAGAATCCAGTCTCAGCTATGATTGCAGCCATTACGCAAGACTATGAGGCAGTTGTGACATGTTTGGATGATACTCGTCACGGATTGGAGGATGGCGACTATGTTACGTTTAGTGAGGTTCAAGGTATGACAGAACTAAATGGCTGTGAACCCCGCAAGATCAAAGTCCTTGGTCCCTACACTTTTAGTATAGGTGATACTACAAACTTCTCCAAATACATCCGAGGAGGTATTGTTACACAGGTCAAAATGCCCAAGAAGATCAACTTCAAGCCTTTGAGTGAATCATTCAAACAACCAGAATTCTTGATCTCTGATTTTGCCAAGTTTGAATATCCACAGCAGTTGCATTTGGCTTTTGCTGCTCTTCACAAGTTCCAGGCTGGAGAAGGTCGTCTGCCAAAGCCATGGAATGATGAAGATGTGGCAAAATTCAAGCTGTATGTGAAAACTGTTCTAGAGGATGGACTTTATAAGGATGAAGATTTTGAAGTGAATACTGAATTATTGGAAACATTCTGTAAGATATCGTCAGGAGACCTAAATCCTATGAACGCAGCGATAGGCGGTGTGGTTGCTCAAGAGGTAATGAAGGCTTGTTCTGGCAAGTTCCACCCACTTGTACAGTGGCTTTACTTGGATGCTATTGAGTGCTTACCTAAAGACCATTCAACTCTCACCGAAGAAAATTGCAAACCAGTCGGTTCACGATATGATGGACAGGTAGCTGTTTTTGGTAGAGAATTCCAAAAGAAACTTGGACAGCTGAAGTATTTTATTGTGGGTGCTGGTGCTATCGGATGTGAATTATTAAAGAACTTTGCCATGATTGGTGTGGGTGCTGATGGAGGACAAATTACAGTCACGGATATGGACCTCATTGAGAAGTCTAACCTCAACAGGCAGTTCTTGTTTAGGCCTTATGATGTACAGAAACCGAAATCTAGTACTGCAGCTAATGTAATTAAACGCATGAATCCAGCAGTAAATGTTTTGGCACAAGAAAACAGAGTTTGCCCTGAGACCGAGTCCGTCTACAATGATGCATTCTTTGAAGCATTGGATGGTGTAGCCAATGCACTCGACAATGTCGACGCCCGTATATACATGGACAGACGGTGTGTGTATTATAGAAAACCTTTATTGGAGAGTGGCACTCTTGGAACTAAAGGAAATACACAGGTGGTTGTTCCATTCCTTACGGAATCTTACAGCTCATCCCAGGACCCTCCCGAGAAGAGTATTCCTATTTGTACGCTCAAGAACTTCCCGAATGCCATTGAACACACACTACAATGGGCTCGCGATGAATTCGAAGGTTTATTCCGTCAGGCTGCTGAGCATGCTGCCCAATACTTGCAGGACCCGAATTTCTTGGACCGCTGTCTTAAATTGCCTGGTACTCAGCCTTTGGATGCTATTGAGAGTGTGCGAAACGCTATAAACGAACGCCCTCACAGTTTCGACGACTGCGTGATATGGGCGAGACATCATTGGGAGAACCAATACGCGAACCAGATCAAGCAGCTCCTTTACAACTTCCCGGCGAAACAGTTGACCACGAGCGGAGCGCCTTTCTGGTCCGGACCGAAGCGTTGTCCTTCACCCCTCGCCTTCGATCCTAATGATGAACTACACGTCGATTACATTGTTGCCGCAGCGAACCTCAGGGCTACGGTATATGGAATCCCATCCTGTGTTGACAGGGAAAACATCGCCAAGCTTGCCGCTAGCATACAGGTACCGAAATTCAGCCCCAAATCCGGCGTGAAGATCGCGGTGAGCGACGCCCAGTTACAGCAAAACAATGACGAGATGGATCAAGACAGGGTTAAGAACATGATCGCAGAGCTGCCGTCTCCAAGCAAACTCGGATCTCTTAAGATCACACCGCTAGAATTCGAAAAAGATGATGATACAAATTTCCACATGGACTTCATCGTTGCCGCCTCCAACCTGCGGGCTACCAACTACAAGATCACGCCAGCCGACAGACATCGCTCTAAACTCATCGCTGGCAAGATTATCCCTGCCATTGCCACTACAACATCCGTGGTGGCTGGCTTAGTCTGCCTCGAACTTTACAAACTGGCCCAAGGCTTCAATAAGCTGGAAGTGTTCAAGAACGGCTTCGTCAACCTTGCCCTGCCCTTCTTCGGTTTCTCTGAACCGATTGCGCCGTCGACCAACACCTACAATGAGAATAAGTGGACATTATGGGACAGATTTGAAGTTAAAGGAGAGATTACATTACAGCAATTTTTAGATCACTTCAAAAACGAACACAAGTTGGAGATCACCATGTTGTCTCAAGGTGTGTGCATGCTTTATTCGTTCTTCATGCCCAAAGCCAAGCGGCTGGAACGATTGAACCTGCCAATGTCGGAGGTGGTCACAAAAGTGTCCAAGAAGAAGTTGGAACCGCATGTGAATGCATTAGTTTTTGAATTGTGCTGCAATGATGATGACGGGAATGATGTGGAGGTCCCGTATGTAAAATACACTCTGCCTTAG
Protein
MSSAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRALTSCEQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGASWAEQERVAAFTHANNIALVIADTRGLFSQVFCDFGPEFTVLDVNGENPVSAMIAAITQDYEAVVTCLDDTRHGLEDGDYVTFSEVQGMTELNGCEPRKIKVLGPYTFSIGDTTNFSKYIRGGIVTQVKMPKKINFKPLSESFKQPEFLISDFAKFEYPQQLHLAFAALHKFQAGEGRLPKPWNDEDVAKFKLYVKTVLEDGLYKDEDFEVNTELLETFCKISSGDLNPMNAAIGGVVAQEVMKACSGKFHPLVQWLYLDAIECLPKDHSTLTEENCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVGAGAIGCELLKNFAMIGVGADGGQITVTDMDLIEKSNLNRQFLFRPYDVQKPKSSTAANVIKRMNPAVNVLAQENRVCPETESVYNDAFFEALDGVANALDNVDARIYMDRRCVYYRKPLLESGTLGTKGNTQVVVPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFRQAAEHAAQYLQDPNFLDRCLKLPGTQPLDAIESVRNAINERPHSFDDCVIWARHHWENQYANQIKQLLYNFPAKQLTTSGAPFWSGPKRCPSPLAFDPNDELHVDYIVAAANLRATVYGIPSCVDRENIAKLAASIQVPKFSPKSGVKIAVSDAQLQQNNDEMDQDRVKNMIAELPSPSKLGSLKITPLEFEKDDDTNFHMDFIVAASNLRATNYKITPADRHRSKLIAGKIIPAIATTTSVVAGLVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYVKYTLP

Summary

Catalytic Activity
ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.
Similarity
Belongs to the ubiquitin-activating E1 family.
Belongs to the ATP-dependent DNA ligase family.
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
EC Number
6.5.1.1
EMBL
BABH01026707    ODYU01012959    SOQ59516.1    NWSH01000074    PCG79922.1    RSAL01000151    + More
RVE45758.1    KQ459595    KPI95780.1    GAIX01004505    JAA88055.1    AGBW02008504    OWR53156.1    KQ971319    KYB28908.1    GECZ01031811    GECZ01030264    GECZ01026537    GECZ01022093    GECZ01017859    GECZ01014533    GECZ01012094    GECZ01001736    GECZ01001077    JAS37958.1    JAS39505.1    JAS43232.1    JAS47676.1    JAS51910.1    JAS55236.1    JAS57675.1    JAS68033.1    JAS68692.1    GECU01012839    JAS94867.1    NEVH01016298    PNF25914.1    PYGN01001566    PSN34011.1    KK854113    PTY11496.1    KK852601    KDR20513.1    KY285051    ATP16154.1    KQ435922    KOX68475.1    ADTU01013251    KQ976401    KYM92525.1    AK417834    BAN21049.1    KK107522    QOIP01000001    EZA49316.1    RLU27013.1    KQ979851    KYN18846.1    GL888182    EGI65663.1    KQ981490    KYN41074.1    KQ460367    KPJ15459.1    KQ759817    OAD62768.1    KZ288198    PBC33658.1    JR050190    AEY61195.1    KQ978023    KYM97871.1    KQ434998    KZC13334.1    KQ982696    KYQ51978.1    GL453586    EFN75831.1    KQ414582    KOC70892.1    GBHO01017512    JAG26092.1    GEZM01096352    JAV54959.1    GBRD01015156    JAG50670.1    KB632404    ERL95070.1    GECL01003602    JAP02522.1    GDKW01000486    JAI56109.1    LBMM01000231    KMR03596.1    GBGD01000263    JAC88626.1    GBYB01011196    JAG80963.1    LJIG01022490    KRT80302.1    GFTR01008495    JAW07931.1    ACPB03007889    APGK01052863    KB741216    ENN72491.1    GANO01001085    JAB58786.1    GEDC01017015    JAS20283.1    GFDF01004427    JAV09657.1    GFDL01011392    JAV23653.1    GFDL01011285    JAV23760.1    GFDL01011341    JAV23704.1    GFDL01011291    JAV23754.1    GFDL01011325    JAV23720.1    GGMR01004437    MBY17056.1    DS231828    EDS29801.1    GAPW01000070    JAC13528.1    GDIQ01102522    JAL49204.1    LRGB01003241    KZS03606.1    GFXV01001657    MBW13462.1    AXCN02001090    KU998261    ANZ80593.1    ABLF02020541    ABLF02020542    CH477201    EAT48169.1    GDRN01069228    JAI64082.1    GGFJ01001216    MBW50357.1    GGFJ01001217    MBW50358.1    APCN01002415    GGMS01003248    MBY72451.1    EAT48168.1    JQ061292    AFK65746.1    GGFM01006495    MBW27246.1    GGFM01000524    MBW21275.1    GGFM01000526    MBW21277.1    GL732523    EFX89910.1    GEDV01003632    JAP84925.1    AAAB01008986    GACK01005310    JAA59724.1    GDRN01069227    JAI64083.1    GFAC01005767    JAT93421.1    GGFK01000770    MBW34091.1    ADMH02002004    ETN60012.1    GGFK01000752    MBW34073.1    GGFL01003357    MBW67535.1    GBBL01000915    JAC26405.1    MG452698    AYD41585.1    JO842921    AEO34538.1    GEFM01006494    JAP69302.1    GEFH01004093    JAP64488.1   
Pfam
PF16191   E1_4HB        + More
PF00899   ThiF
PF09358   E1_UFD
PF10585   UBA_e1_thiolCys
PF16190   E1_FCCH
PF01068   DNA_ligase_A_M
PF03911   Sec61_beta
PF04679   DNA_ligase_A_C
PF04675   DNA_ligase_A_N
PF00225   Kinesin
Interpro
IPR035985   Ubiquitin-activating_enz        + More
IPR018075   UBQ-activ_enz_E1       
IPR000594   ThiF_NAD_FAD-bd       
IPR038252   UBA_E1_C_sf       
IPR000011   UBQ/SUMO-activ_enz_E1-like       
IPR018965   Ub-activating_enz_E1_C       
IPR019572   UBA_E1_Cys       
IPR042302   E1_FCCH_sf       
IPR033127   UBQ-activ_enz_E1_Cys_AS       
IPR032418   E1_FCCH       
IPR042063   Ubi_acti_E1_SCCH       
IPR018074   UBQ-activ_enz_E1_CS       
IPR032420   E1_4HB       
IPR016059   DNA_ligase_ATP-dep_CS       
IPR012340   NA-bd_OB-fold       
IPR012310   DNA_ligase_ATP-dep_cent       
IPR016482   SecG/Sec61-beta/Sbh       
IPR000977   DNA_ligase_ATP-dep       
IPR012308   DNA_ligase_ATP-dep_N       
IPR036599   DNA_ligase_N_sf       
IPR012309   DNA_ligase_ATP-dep_C       
IPR027417   P-loop_NTPase       
IPR019821   Kinesin_motor_CS       
IPR001752   Kinesin_motor_dom       
IPR036961   Kinesin_motor_dom_sf       
IPR019787   Znf_PHD-finger       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR019786   Zinc_finger_PHD-type_CS       
SUPFAM
SSF69572   SSF69572        + More
SSF117018   SSF117018       
SSF50249   SSF50249       
SSF52540   SSF52540       
SSF57903   SSF57903       
SSF57667   SSF57667       
PDB
6DC6     E-value=0,     Score=3611

Ontologies

Topology

Length:
1043
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.39845
Exp number, first 60 AAs:
9e-05
Total prob of N-in:
0.00779
outside
1  -  1043
 
 

Population Genetic Test Statistics

Pi
24.878868
Theta
22.273997
Tajima's D
0.260587
CLR
0.639903
CSRT
0.450127493625319
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 QAAEHAAQYLQDPNFLDR 100.00 5e-09
28556443 FEYPQQLHLAFAALHK 100.00 5e-09
26822097 VAAFTHANNIAIVIADTR 95.65 9e-09
25044914 ISSESIVNHIGEQK 95.65 9e-09
28467696 ISSENWPEFKPK 95.65 9e-09
26822097 INIPMSEVVTK 100.00 5e-08
25044914 NAIISISDEQKK 100.00 5e-08
27102218 DEFEGIFR 100.00 5e-08
28467696 NAIISDEIYCPPETSVIIASYAVQAR 100.00 5e-08
26822097 QITTSGAPFWSGPK 95.24 9e-07
28467696 IAVQISEIVAIAR 95.24 9e-07
28556443 ISSGDLNPMNAAIGGVVAQEVMK 100.00 2e-06
28556443 QLTTSGAPFWSGPK 100.00 7e-06
26822097 MNPAVNVIAQENR 100.00 1e-05
25044914 ATVYGIPSCVDR 100.00 1e-05
28467696 ATVTAIIR 100.00 1e-05
28556443 SLAPAPLPQPVAAVA 100.00 3e-05
28556443 NFPNAIEHTLQWAR 100.00 2e-04
28556443 NFPNAIEHTLQWAR 100.00 2e-04
28556443 MNPAVNVLAQENR 100.00 2e-04
28556443 VVVLTGASWAEQER 100.00 2e-04
28556443 QLYVLGHDAMR 100.00 4e-04
25044914 PHQAIAFR 100.00 0.001
26822097 YFIVGAGAIGCEIIK 100.00 0.002
25044914 HHVTPPK 100.00 0.002
28467696 HHCPSTPIIIVGTK 100.00 0.002
28556443 MNPAVNVLAQENR 100.00 0.004
28556443 ATVYGIPSCVDR 100.00 0.007
28556443 ISSGDLNPMNAAIGGVVAQEVMK 100.00 0.007
28556443 LNTGEAHSNNSAMANNGAR 100.00 0.007
26822097 QFIFRPYDVQKPK 100.00 0.013
28467696 SSAANIEAGVGPTTAPR 100.00 0.013
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