SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04805
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.293 PlasmaMembrane   Reliability : 1.323
 

Sequence

CDS
ATGTGTTTCATCGACTACAGCAAGGCTTTTGATTGTGTCAACTGGAGTTCCTTGTGGAAGGTATTGAATGTTCTTGGTGTACCCAATCATCTGATAGTGCTGGTACAGAGCCTGTATATCTACAGTCAGGGAGTTGTCAGAATCGATGAAGCTGTGTCCCAACCGTTCTGTTTTGGAAAAGGTGTCCGGCAGGGTTGCATACTGTCACCTATACTTTTTAATGCATATGGAGAGTACATCATGCGGCAGACTTGTGAAGATTGGTCGGGAGGTATGCGCATTGGTGGAGCTCATATTACAAATCTCCGATATGCCGATGACACGACCCTGCTAGCTGTAGACGAACCTGAAATGTCTCTTTTCTTCAGCAAAATGGAACGTATCAGCAACAGCCTAGGCCTCTCCATAAATAGATCAAAAACGAAATTAATGGTGGTGGATCGTGCAAATGTTCTAAGATTGAATGCGGCGCTTGGATTAGAGGTTGTAGACGAATTCGTGTATCTCGGGTCCTGCATCAGCAACAAAGGCTCATGTGAAACTGACGTGCGCCGACGTATCGGAATGGCTAAAAGTGCGATGTCTCAGCTACAGAAGATCTGGAAGAATAGAGGGATAGGCCTGAAAACTAAAACCAGACTGGTGCGGACTCTTGTTTTCTCTATCTTCTTGTATGGAGCTGAGACATGGACGTTGAAAGCAGCAGACCGAATGCGCATCGATGCTTTCGAAATGTGGTGTTGGAGACGCATGCTAAGAATTCCGTGGACAGCCTTCCGGACTAACGTGTCGATATTGAAGCAACTGGGCATCAAAATCAGACTGTCTACTGTATGTCTGAAGCGGATCCTCGAATATTTTGGTCACATTGCGAGGAAAGACGGCGATAACCTGGAAAAACTTATGATCACAGGGAAAGTTGAAGGCAACAGATCTAGAGGCCGCAGCCATACTCGTTGGTCCGATCAGATCCGCACCGCTTTGGACAGTACAGTGTACAGCGCGCTGCATGACGCCGTGGACAGGGGAAAGTGGAAAAAGATCCTAAGATTGAAGCTCATAGGTGATGGTGGTCACGACCCTCAGACACGAGGAACACGACTCGAGGAGGAGGAAATGAAAGAAGATTATTTTTATAAAAGGAATGATTTGACGAACGCGCGCGGGAAGACAATACATGTTTACGATGCGTCCGATGGTTACGTGACGTCACGGAGGACACACGGGTCAAGTTCAGGCATTGTTATTGCATAG
Protein
MCFIDYSKAFDCVNWSSLWKVLNVLGVPNHLIVLVQSLYIYSQGVVRIDEAVSQPFCFGKGVRQGCILSPILFNAYGEYIMRQTCEDWSGGMRIGGAHITNLRYADDTTLLAVDEPEMSLFFSKMERISNSLGLSINRSKTKLMVVDRANVLRLNAALGLEVVDEFVYLGSCISNKGSCETDVRRRIGMAKSAMSQLQKIWKNRGIGLKTKTRLVRTLVFSIFLYGAETWTLKAADRMRIDAFEMWCWRRMLRIPWTAFRTNVSILKQLGIKIRLSTVCLKRILEYFGHIARKDGDNLEKLMITGKVEGNRSRGRSHTRWSDQIRTALDSTVYSALHDAVDRGKWKKILRLKLIGDGGHDPQTRGTRLEEEEMKEDYFYKRNDLTNARGKTIHVYDASDGYVTSRRTHGSSSGIVIA

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
417
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.38591
Exp number, first 60 AAs:
2.40332
Total prob of N-in:
0.14287
outside
1  -  417
 
 

Population Genetic Test Statistics

Pi
6.388627
Theta
15.614197
Tajima's D
-1.444396
CLR
0
CSRT
0.0654467276636168
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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