Gene

KWMTBOMO04802  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009910

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX52_[Plutella_xylostella]

Location

Bomo_Chr8(+):15427662-15437136      View in EpiBrowser

Full name

Eukaryotic translation initiation factor 3 subunit H      

Location in the cell

Nuclear   Reliability : 4.26

CDS

ATGGACGCATACGATATATTCAAGAAATTAACGAAAGGATTGTCATTTAAAAAACCTGTGTTGGGTGTTAAAAACAATCAACAGAAAACTAAACAGGAGACCTTAAAACAAGAAATTGAAATCAAGAAGGAAGAATTGAGCGACTTTGAAGATGTTGCGGAAATTGAGAATGATTTGGAAAACTCCCAACCAAGTTCTGGAAGCGAGGAAGAAGAATTGGAGCTAGTTGATGGTGTTAAAGTTGGTAAAAAAAAGCGGGGAAAGAAAAAGAAGGAAATAACCGAAGATTTAAAGAAGAAACTGTTACAAGAGGAGGAAAATCGTTTTCGTAATGAACATGGTATCAAAGCAGTCGGCCGACACATACCACCAGCACTAAAAGACTTTTCGGACTTGACTGTCCGTTACAATGTTCCACAGGCTCTTGTTGATACAGTCACCCAGTGTGGATACAGTGAACCCACTCCAGTTCAACGTCAAGCAATGGCTTGCATGTTGGAGGACCGTCAAATAGTAGCATGCGCTCCTACGGGGTCGGGTAAAACTGCCGCGTTTATCGTACCCCTCCTTCATACATTAGGAACGCACCAAGGCGGTCCTAGAGCCCTAATACTGTGCCCTACTAGGGAACTGGCTCATCAAATATACAGGGAGGCCCTACGGCTGAGTGCCTCAACTCAACTTAGAGTTACAGTTGTGAAGAATTTGAAAGAAAGTAAAGTTAAAGAACGCGAAGCTACCTTCCGGAAAAGCGATATAGTTATAAGTACACCAAATCGACTCTGCTATCTACTGAATCAAGATCAAGTTAATATTTCTTTAGAGAAAGTACGCTGGCTTATAATCGACGAGGCCGACAAGCTGTTCGAGGGCTCCTCAGAGCAGGAATCCGACTTCAGGCAGCAGCTGGAGCAGATAATGTGCCGCTGTGGACCGAAACGCCTCATCGCCATGTTCAGCGCCACGCACACGCCGCCCGTCGCCCGCTGGAGCCGCCGCCACCTGCGCGGGCTCGTCAACGTCACCGTGGGACACAGGAACGCTGCGACGAGCCTGGTGGAGCAGCAGCTGCTGTACTGCGGCAACGAGGATGGCAAGCTGGTGGCGTTCCGGCAGCTCGTGCAGCAAGGACTCAAGCCCCCCGTACTAGTCTTCGTACAAAGTAAAGATCGCGCGAAACAATTGTTCAAGGAACTCATATATGACGGCATCAACGTGGACGTCATACACGCAGACAGGACTCAGGCTCAGCGAGACAACGTGGTCCGCAGCTTCCGCGTGGGACGTATATGGGTCCTGATCAGCACCGAACTGATGGGCCGCGGGATCGACTTCCGGGGAGTGAATCTGGTCATCAACTACGACTTCCCACCCTCAGCTATATCTTACGTACACAGGATCGGGCGTGCGGGCCGGGCCGGTCACAGGGGGAGGGCTGTGACGTTCTTCACGCAGGACGACGTCGTCAACTTGAGGAGCATCGCGTCGGTGATGAAGCAGTCCGGCTGCGAGGTCCCGGAGTACATGCTGAGGCTGAAGCAAGACTCCAACAAGCGAAAACGGCTGCTCAAGAAGGCTCCGCATCGAGATAAAATATCCACTATACTAGAGAAGCCGGTCAAAAGGAAATTAGAAGAAGGAAAGGATTCTAATGTAAATTCAAAAGATACAGAGAAGATAAAGAACGGTAAACACAAGAAGCAAAGGAAAATTGATGGAACAAAAGAAAATGGCGCTCGCAGAAGTACGAGCGAGAAGGAGAATAAAAGGAAAAAATTTAAAAAGAATAAAAAGATTAAATTAACCAAAAAACCTAAATCTGGAAGTTGA

Protein

MDAYDIFKKLTKGLSFKKPVLGVKNNQQKTKQETLKQEIEIKKEELSDFEDVAEIENDLENSQPSSGSEEEELELVDGVKVGKKKRGKKKKEITEDLKKKLLQEEENRFRNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRALILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLEKVRWLIIDEADKLFEGSSEQESDFRQQLEQIMCRCGPKRLIAMFSATHTPPVARWSRRHLRGLVNVTVGHRNAATSLVEQQLLYCGNEDGKLVAFRQLVQQGLKPPVLVFVQSKDRAKQLFKELIYDGINVDVIHADRTQAQRDNVVRSFRVGRIWVLISTELMGRGIDFRGVNLVINYDFPPSAISYVHRIGRAGRAGHRGRAVTFFTQDDVVNLRSIASVMKQSGCEVPEYMLRLKQDSNKRKRLLKKAPHRDKISTILEKPVKRKLEEGKDSNVNSKDTEKIKNGKHKKQRKIDGTKENGARRSTSEKENKRKKFKKNKKIKLTKKPKSGS

Description

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Subunit

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex.

Similarity

Belongs to the DEAD box helicase family.
Belongs to the eIF-3 subunit H family.

Uniprot

H9JK59   A0A2A4K0Y6   A0A194PXA4   A0A194RDC1   A0A0L7QSM7   A0A154P053   + More
A0A2A3E4M6   D6WHF8   A0A026WT93   A0A195CCY7   A0A195EHD4   A0A195FF55   A0A067QRL4   F4WY97   A0A2J7Q1B3   A0A2J7Q1A1   A0A195AX39   A0A158NHT0   A0A1W4XMH0   A0A151WQT2   A0A088A3I3   K7IRY2   A0A232FJM5   A0A1B6CLU8   N6T2V3   A0A2R7W2G6   J3JWN9   A0A1A9X027   A0A1A9UUY7   A0A1B0ASX3   A0A1B0C8R4   A0A1A9XYC7   A0A1B6MTW2   U4UXL9   A0A0L0C588   A0A1B0FI31   B4N4N5   A0A1I8NUX7   A0A1A9ZLN9   A0A2S2PW99   A0A1B6HEI1   A0A1B6FC57   E2BXA2   B3M3V9   B4GZQ4   B5DQ82   B4L0G8   A0A3B0JM30   B4LIG4   A0A1L8DGA2   A0A2H8TT76   A0A1I8MKR7   A0A182GP65   A0A1S4FXZ9   Q16KK0   A0A182P1R6   B3NHR1   A0A0M5JB23   E9GSQ0   A0A0P5WU69   A0A0A9WXQ0   A0A1W4W533   A0A0P4YE59   A0A146MG33   A0A1Y1L408   A0A0P5X025   A0A084WQN8   A0A2B4S2X6   A0A0P5WSG2   A0A0P4ZJU7   B4HKW8   A0A0P5MJ44   A0A0R1DYK2   B4PJJ1   A0A0J9UNE0   A0A224XM11   B4QPA7   Q9VVK8   A0A0P5MBJ4   A0A0P6CP43   A0A0P6F8X0   B5X544   A0A1B0CQ14   H9ZYP2   A0A182V1B8   A0A182RB65   A0A182TKG6   A0A182HQ94  

Pubmed

19121390    26354079    18362917    19820115    24508170    30249741    + More
24845553    21719571    21347285    20075255    28648823    23537049    22516182    26108605    17994087    20798317    15632085    18057021    25315136    26483478    17510324    21292972    25401762    26823975    28004739    24438588    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867   

EMBL

BABH01026699    NWSH01000260    PCG77931.1    KQ459595    KPI95775.1    KQ460367    + More
KPJ15464.1    KQ414758    KOC61471.1    KQ434783    KZC04724.1    KZ288403    PBC26216.1    KQ971321    EFA00097.2    KK107109    QOIP01000008    EZA59163.1    RLU19646.1    KQ978023    KYM98081.1    KQ978957    KYN27282.1    KQ981636    KYN38852.1    KK853042    KDR12154.1    GL888439    EGI60854.1    NEVH01019430    PNF22367.1    PNF22364.1    KQ976725    KYM76610.1    ADTU01016037    KQ982813    KYQ50259.1    NNAY01000103    OXU30946.1    GEDC01022896    JAS14402.1    APGK01054677    APGK01054678    APGK01054679    APGK01054680    KB741251    ENN71883.1    KK854261    PTY13872.1    BT127657    AEE62619.1    JXJN01003037    AJWK01001283    GEBQ01000648    JAT39329.1    KB632404    ERL95035.1    JRES01000902    KNC27396.1    CCAG010009519    CH964095    EDW79109.2    GGMS01000421    MBY69624.1    GECU01034618    JAS73088.1    GECZ01021972    JAS47797.1    GL451230    EFN79685.1    CH902618    EDV39293.2    CH479199    EDW29481.1    CH379069    EDY73775.1    CH933809    EDW19137.1    OUUW01000002    SPP76480.1    CH940647    EDW70751.1    KRF85084.1    GFDF01008608    JAV05476.1    GFXV01004987    MBW16792.1    JXUM01014872    KQ560415    KXJ82526.1    CH477953    EAT34832.1    CH954178    EDV51926.1    CP012525    ALC43856.1    GL732562    EFX77543.1    GDIQ01188150    GDIP01082045    JAK63575.1    JAM21670.1    GBHO01032291    JAG11313.1    GDIP01232333    JAI91068.1    GDHC01000742    JAQ17887.1    GEZM01068203    JAV67100.1    GDIP01079637    JAM24078.1    ATLV01025642    KE525396    KFB52532.1    LSMT01000209    PFX23393.1    GDIP01082044    JAM21671.1    GDIP01215589    JAJ07813.1    CH480815    EDW41923.1    GDIQ01204251    GDIQ01155869    GDIQ01092694    GDIQ01036256    GDIQ01030283    LRGB01000687    JAK95856.1    KZS16950.1    CM000159    KRK01983.1    EDW94679.1    CM002912    KMZ00311.1    GFTR01006794    JAW09632.1    CM000363    EDX10901.1    AE014296    AAF49303.1    GDIQ01158017    JAK93708.1    GDIQ01090238    JAN04499.1    GDIQ01052321    JAN42416.1    BT046163    ACI46551.1    AJWK01022922    BT133390    AFH41849.1    APCN01003303   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000053825    UP000076502    + More
UP000242457    UP000007266    UP000053097    UP000279307    UP000078542    UP000078492    UP000078541    UP000027135    UP000007755    UP000235965    UP000078540    UP000005205    UP000192223    UP000075809    UP000005203    UP000002358    UP000215335    UP000019118    UP000091820    UP000078200    UP000092460    UP000092461    UP000092443    UP000030742    UP000037069    UP000092444    UP000007798    UP000095300    UP000092445    UP000008237    UP000007801    UP000008744    UP000001819    UP000009192    UP000268350    UP000008792    UP000095301    UP000069940    UP000249989    UP000008820    UP000075885    UP000008711    UP000092553    UP000000305    UP000192221    UP000030765    UP000225706    UP000001292    UP000076858    UP000002282    UP000000304    UP000000803    UP000075903    UP000075900    UP000075902    UP000075840   

PRIDE

H9JK59    Q9VVK8   

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF01398   JAB

Interpro

IPR027417   P-loop_NTPase        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014001   Helicase_ATP-bd       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR001650   Helicase_C       
IPR000555   JAMM/MPN+_dom       
IPR037518   MPN       
IPR027524   eIF3h       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc
cd08065  MPN_eIF3h

ProteinModelPortal

H9JK59   A0A2A4K0Y6   A0A194PXA4   A0A194RDC1   A0A0L7QSM7   A0A154P053   + More
A0A2A3E4M6   D6WHF8   A0A026WT93   A0A195CCY7   A0A195EHD4   A0A195FF55   A0A067QRL4   F4WY97   A0A2J7Q1B3   A0A2J7Q1A1   A0A195AX39   A0A158NHT0   A0A1W4XMH0   A0A151WQT2   A0A088A3I3   K7IRY2   A0A232FJM5   A0A1B6CLU8   N6T2V3   A0A2R7W2G6   J3JWN9   A0A1A9X027   A0A1A9UUY7   A0A1B0ASX3   A0A1B0C8R4   A0A1A9XYC7   A0A1B6MTW2   U4UXL9   A0A0L0C588   A0A1B0FI31   B4N4N5   A0A1I8NUX7   A0A1A9ZLN9   A0A2S2PW99   A0A1B6HEI1   A0A1B6FC57   E2BXA2   B3M3V9   B4GZQ4   B5DQ82   B4L0G8   A0A3B0JM30   B4LIG4   A0A1L8DGA2   A0A2H8TT76   A0A1I8MKR7   A0A182GP65   A0A1S4FXZ9   Q16KK0   A0A182P1R6   B3NHR1   A0A0M5JB23   E9GSQ0   A0A0P5WU69   A0A0A9WXQ0   A0A1W4W533   A0A0P4YE59   A0A146MG33   A0A1Y1L408   A0A0P5X025   A0A084WQN8   A0A2B4S2X6   A0A0P5WSG2   A0A0P4ZJU7   B4HKW8   A0A0P5MJ44   A0A0R1DYK2   B4PJJ1   A0A0J9UNE0   A0A224XM11   B4QPA7   Q9VVK8   A0A0P5MBJ4   A0A0P6CP43   A0A0P6F8X0   B5X544   A0A1B0CQ14   H9ZYP2   A0A182V1B8   A0A182RB65   A0A182TKG6   A0A182HQ94  

PDB

5DTU     E-value=7.80069e-50,     Score=500

KEGG

101739012    K14779 ATP-dependent RNA helicase DDX52/ROK1 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0004386   GO:0005524   GO:0003676   GO:0016282   GO:0003743   GO:0005852   GO:0001732   GO:0033290   GO:0004004   GO:0008168   GO:0006000   GO:0006003   GO:0006032   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR10410:SF3  

Subcellular location

Cytoplasm  

Length:

609

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05507

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00306

outside

1  -  609

 

 

Pi

22.014702

Theta

20.629404

Tajima's D

0.285274

CLR

0.956964

CSRT

0.452027398630069

Interpretation

Uncertain