Silkworm Genome Informatics Database

Gene

KWMTBOMO04800

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr8(-):15301835-15302951 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.097

CDS

ATGGAGAAAACTGAAAATACAATTGAAATTCCTATTGAGTGCAAGGCTCCAGCGGAGGAACAGAGAGAAGGAGACGAAAGTAGAACTACAGAAAGTACAGACACTGAATGTGATGATAATGATATCACATATATTCCAGAAGCTTCTTCAGGAAGTGACTCATATGACAGTTTTTCTGAAACACCATCAGAACCAGAACCTTCATTATTAGAATTGAATCAGGATATTCCAAACAAGCGGGTGAGAAAAATACCTGATAGATTTAGCTATAGTCACTTATGTATTGCAGAATCAGATGATCAAAATATAATGGATATTTCACTCAAGGAAGCTTTAAATGGACCTGAAAGTAAATTTTGGAGATCAAGCATGGAGGAGGAATTAGAATCATTTAAGAAAAATGATGCATGGGAACTTGTGGATAAGCCTCGTGACTCTACAGTAGTGCAGTGCAAATGGGTATTTAAAAAGAAGTATGATAGTGTCGGTAATGTGCGTTATCGTGCTAGATTAGTGGCAAAAGGCTTTTCACAGAAAGCTGGCATAGACTATCATGAAACTTTTTCACCTGTGCTACGTTATACTACTTTAAGATTGTTATTTTCTATAGCAGTAAAACTAGGTTTAGATATACGTCATCTTGATGTCACTACAGCCTTTCTAAATGGTTTTTTGAATGAATCTGTGTATATGCAAAAACCTGTCCTTTATAGAGATTGTAATGATAATGATAACAAAGTATTAAAGCTTAAACGTGCCATATATGGACTTAAGCAATCATCTCGTGCTTGGTATCAGAGAGTTAATGATTACTTAGAGTCTTTAGGATATTTAAAATCTAATTAA

Protein

MEKTENTIEIPIECKAPAEEQREGDESRTTESTDTECDDNDITYIPEASSGSDSYDSFSETPSEPEPSLLELNQDIPNKRVRKIPDRFSYSHLCIAESDDQNIMDISLKEALNGPESKFWRSSMEEELESFKKNDAWELVDKPRDSTVVQCKWVFKKKYDSVGNVRYRARLVAKGFSQKAGIDYHETFSPVLRYTTLRLLFSIAVKLGLDIRHLDVTTAFLNGFLNESVYMQKPVLYRDCNDNDNKVLKLKRAIYGLKQSSRAWYQRVNDYLESLGYLKSN

Uniprot

A0A212F5G1 A0A0A9XV68 W4VRP9 W4VRP2 A0A0A9XY84 A0A146LH62 + More
A0A0N1ICY1 A0A117NI32 A0A0A9WCG6 A0A1J3IJ96 A0A250X157 A0A251UJK4 A0A1Y1IS38 A0A250XRK4 A0A0A1WXQ3

Pubmed

22118469 25401762 26823975 26354079 26645680 28538728 + More
24865297 25830018

EMBL

AGBW02010203 OWR48976.1 GBHO01019780 JAG23824.1 GANO01000659 JAB59212.1 + More
GANO01000660 JAB59211.1 GBHO01019781 JAG23823.1 GDHC01011760 JAQ06869.1 KQ460882 KPJ11482.1 LKAM01000003 KUM49280.1 GBHO01038523 JAG05081.1 GEVM01025909 JAU80029.1 BEGY01000018 GAX76480.1 CM007895 OTG23274.1 DF238519 GAQ93484.1 BEGY01000186 GAX85698.1 GBXI01011094 JAD03198.1

Proteomes

UP000007151 UP000053240 UP000232323 UP000215914 UP000054558

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF13961   DUF4219
PF00098   zf-CCHC

Interpro

IPR039537   Retrotran_Ty1/copia-like        + More
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR013103   RVT_2
IPR036397   RNaseH_sf
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR025724   GAG-pre-integrase_dom
IPR025314   DUF4219

SUPFAM

SSF57756 SSF57756 + More
SSF53098 SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

A0A212F5G1 A0A0A9XV68 W4VRP9 W4VRP2 A0A0A9XY84 A0A146LH62 + More
A0A0N1ICY1 A0A117NI32 A0A0A9WCG6 A0A1J3IJ96 A0A250X157 A0A251UJK4 A0A1Y1IS38 A0A250XRK4 A0A0A1WXQ3

KEGG

NA

GO

GO:0008270 GO:0003676 GO:0000943 GO:0015074 GO:0005739

PANTHER

PTHR11439

Length:

281

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0212

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07790

outside

1 - 281

Pi

3.419711

Theta

3.933133

Tajima's D

-0.348197

CLR

122.610231

CSRT

0.295035248237588

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree