Gene

KWMTBOMO04799

Annotation

Endonuclease-reverse_transcriptase_[Operophtera_brumata]

Location

Bomo_Chr8(-):15259422-15260161      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.334

CDS

ATGGAAGAAGTTTTAAACACGCTAATTTCAATAAAAAAAGAACTGGAAGAACAAAGAATTGAAATTAGAGAAACTGGAAAAAATGTTACGGAAAAAGTTACACAAAATATTACTAGTATATTCGAGGAGAAATTTTTGGTCTGGGAAGGAAAACTTGGAGAAATGAAAGAAAAAGTGGAAAATCAAGAAAAAAGAATTCATTACCTGGAAAAACAAACAAGAGTAAGAAACTTAGTATTTTTCGGTATCGAGGAAAACGAAACATCATACAAGAGTTTCGAAGAAAATATAATTAAATGGATTGAGCAATATTTCTCTATCAAACTAACCTACAGCGACATTCAAGAGATAAAAAGACTGGGAAAGAAACAAGAGAGACCACGTCCAACTGTTGTAACTTTCACTACACTAGGAATAAAAATCGAAATATTTAAACAAAAAAGAGCGCTGAAAGATACACAGTACTATATGAAAGAAGAATCCCCAAATATGTACTTGAAAAAAGAAAGGCACTACAGGAACAACTGA

Protein

MEEVLNTLISIKKELEEQRIEIRETGKNVTEKVTQNITSIFEEKFLVWEGKLGEMKEKVENQEKRIHYLEKQTRVRNLVFFGIEENETSYKSFEENIIKWIEQYFSIKLTYSDIQEIKRLGKKQERPRPTVVTFTTLGIKIEIFKQKRALKDTQYYMKEESPNMYLKKERHYRNN

Uniprot

A0A0L7LRM0   A0A0L7KL25   A0A2A4KAH5   A0A0L7KMI6   A0A194RRA2   A0A2H1WF27   + More
D7F178   A0A0L7L326   A0A0L7L7L2   A0A0L7K555   A0A0L7L607   A0A0L7K4V6   A0A0L7LLD6   A0A0L7KFW9   A0A2H1WS99   A0A0L7KSD0   A0A0L7LIY0   A0A0L7K2J4   A0A0L7KKN3   A0A0L7LQQ8   A0A0L7LFX4   A0A0L7LUV7   A0A2A4JB54   D7F177   A0A0L7LJT1   A0A0L7K3H0   A0A0L7LL17   A0A0L7L5X6   A0A0L7K5L4   A0A0L7LIK1   A0A0L7KQ23   A0A0L7KKY9   A0A0L7L8N5   A0A0L7KYJ0   A0A0L7LDK8   A0A194RI32   A0A069DR53   A0A0L7KNI1   A0A2W1BGL1   A0A2A4JED5   A0A0L7KX87   A0A0L7LNS8   A0A0L7LB65   A0A0L7L3X8   A0A0L7LKR7   A0A0L7LNA7   A0A0L7KMI1   A0A2H1VBB6   H9J4J3   A0A2A4K1M2   H9JV04   A0A1Y1K7J7   A0A023FA32   A0A2A4J3C0   D7F179   A0A2W1BQP2   A0A2A4J1F3   A0A2A4IX08   A0A224XU30   A0A0L7LNF8   A0A2A4J436  

Pubmed

26227816    26354079    20470440    26334808    28756777    19121390    + More
28004739    25474469   

EMBL

JTDY01000237    KOB78120.1    JTDY01009375    KOB63594.1    NWSH01000023    PCG80652.1    + More
JTDY01008567    KOB64512.1    KQ459995    KPJ18566.1    ODYU01008249    SOQ51673.1    FJ265563    ADI61831.1    JTDY01003329    KOB69721.1    JTDY01002467    KOB71355.1    JTDY01010406    KOB58220.1    JTDY01002701    KOB70892.1    JTDY01010650    KOB58126.1    JTDY01000640    KOB76373.1    JTDY01009971    KOB62006.1    ODYU01010663    SOQ55918.1    JTDY01006513    KOB65949.1    JTDY01000895    KOB75518.1    JTDY01016948    KOB51874.1    JTDY01009336    KOB63636.1    JTDY01000362    KOB77536.1    JTDY01001350    KOB74106.1    JTDY01000076    KOB79001.1    NWSH01002039    PCG69337.1    FJ265562    ADI61830.1    JTDY01000843    KOB75692.1    JTDY01014369    KOB52037.1    JTDY01000780    JTDY01000104    JTDY01000008    KOB75906.1    KOB78842.1    KOB79479.1    JTDY01002685    KOB70933.1    JTDY01010526    KOB58179.1    JTDY01000977    KOB75230.1    JTDY01007191    KOB65392.1    JTDY01009161    KOB64038.1    JTDY01002335    KOB71641.1    JTDY01004331    KOB68287.1    JTDY01001575    KOB73484.1    KQ460205    KPJ17094.1    GBGD01002698    JAC86191.1    JTDY01007935    KOB64847.1    KZ150150    PZC72845.1    NWSH01001771    PCG70189.1    JTDY01004672    KOB67888.1    JTDY01000437    KOB77173.1    JTDY01001949    KOB72466.1    JTDY01003098    KOB70157.1    JTDY01000743    KOB76037.1    JTDY01000511    KOB76839.1    JTDY01008572    KOB64508.1    ODYU01001637    SOQ38140.1    BABH01021795    NWSH01000260    PCG77926.1    BABH01037467    GEZM01094517    JAV55655.1    GBBI01000452    JAC18260.1    NWSH01003397    PCG66369.1    FJ265564    ADI61832.1    KZ149976    PZC75915.1    NWSH01004020    PCG65566.1    NWSH01005231    PCG64345.1    GFTR01004496    JAW11930.1    JTDY01000484    KOB76970.1    NWSH01003169    PCG66835.1   

Proteomes

UP000037510    UP000218220    UP000053240    UP000005204   

PRIDE

D7F178    D7F177    H9J4J3    H9JV04    D7F179   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1

Interpro

IPR004244   Transposase_22        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A0L7LRM0   A0A0L7KL25   A0A2A4KAH5   A0A0L7KMI6   A0A194RRA2   A0A2H1WF27   + More
D7F178   A0A0L7L326   A0A0L7L7L2   A0A0L7K555   A0A0L7L607   A0A0L7K4V6   A0A0L7LLD6   A0A0L7KFW9   A0A2H1WS99   A0A0L7KSD0   A0A0L7LIY0   A0A0L7K2J4   A0A0L7KKN3   A0A0L7LQQ8   A0A0L7LFX4   A0A0L7LUV7   A0A2A4JB54   D7F177   A0A0L7LJT1   A0A0L7K3H0   A0A0L7LL17   A0A0L7L5X6   A0A0L7K5L4   A0A0L7LIK1   A0A0L7KQ23   A0A0L7KKY9   A0A0L7L8N5   A0A0L7KYJ0   A0A0L7LDK8   A0A194RI32   A0A069DR53   A0A0L7KNI1   A0A2W1BGL1   A0A2A4JED5   A0A0L7KX87   A0A0L7LNS8   A0A0L7LB65   A0A0L7L3X8   A0A0L7LKR7   A0A0L7LNA7   A0A0L7KMI1   A0A2H1VBB6   H9J4J3   A0A2A4K1M2   H9JV04   A0A1Y1K7J7   A0A023FA32   A0A2A4J3C0   D7F179   A0A2W1BQP2   A0A2A4J1F3   A0A2A4IX08   A0A224XU30   A0A0L7LNF8   A0A2A4J436  

KEGG

101743231    no KO assigned | (RefSeq) uncharacterized LOC101743231

GO

GO:0004519   GO:0003964  

PANTHER

PTHR11505   PTHR23227  

Length:

175

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01669

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08269

outside

1  -  175

 

 

Pi

15.653443

Theta

26.703626

Tajima's D

-1.270475

CLR

0

CSRT

0.0912954352282386

Interpretation

Uncertain