SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04794  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009903
Annotation
PREDICTED:_ATP-dependent_RNA_helicase_DDX42_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 2.686
 

Sequence

CDS
ATGAGTTATCCGGGCGGTGGTGGTAGAGGAATGGGGTTTGCCGGCTTCTCGATGCCGAAGCGAAACCCTTCGAATGTGTCTCTCCATGCTGTGCCGCCTCCAACGACGTCTATGCATGCTGTCCCACCGCCTTCCAGTGGTCTTTCAAAACAAGGATATTCTACAATGAGTGCTATTACACAAAATGCTGTAACTGGCACATGGGGTACTCTTGGGAAGAAACGCGCCAAAACCGAGGATGAGTATTTTGATGATGATGATGAACCTCCAACACCAGCGTTGGCTTATATACCTGCACCAGGAAGCCCTACTAATGCAGCAAGCAGTTCTAGGGCTGATGATGATGATGAAGATCCTCTAGATGCCTACATGGCTGGGTTGGAACAACAGGCAGCTCGGGATTTGGTCACCAGTAAGGAGAATGCAGCCAGCGGAAAAGACAGTGTGAGAGGTACTAGGGGTGATATTGATGATATGGATGATGAAGAGAGTTATTATAAGTATATGGAAGAAAATCCTCTGAATAATGCAGATGACACATCTGATGTAGAAATAGAATATGATGAAGATGGCAATCCTTTAGCTCCAGCGAAGAAAAAGTTCATCGATCCCTTACCTCCTATAGACCACTCTGAGATAGACTATGAACCATTTGAAAAGAACTTCTACACTCCTCATGAAGATATTGAAAAGCTCACACATCAACAAGTTGAGGAATTAAAAAAGAATTTAGGTGTGAAGATAACGGGTCCGGATCCCCCTCGGCCCGTGAGCAGCTTCGCTCACCTCGGGTTCGACGAGCAGCTGATGCGCGCCATCCGCCGCTCGGAGTACACGCAGCCCACGCCCGTGCAGGCCGCCGGCGTGCCCGCCGCCTTGTCCGGACGAGACATTATAGGTATTGCCAGAACCGGCTCAGGCAAGACGTGCGCGTTTCTGTGGCCGCTACTGGTTCACATCATGGATCAGAAGGAATTGGCGCCCGGCGATGGACCAATAGGACTCATCCTTGCTCCCACCAGAGAATTAGCTCAACAGATTTACATGGAAGCGAAGAAATTCGGCAAAGTGTACAACATAAGGTGTGTGTGCTGTTACGGTGGTGGATCGAAATGGGAACAAGTTAAAGCGTTGGAAGGTGGTGGTGCAGAAATAATAGTAGGCACTCCGGGTCGTGTCATAGATTTGGTCAAGTGTAAAGCTACAAATCTACAAAGGGTGACCTATCTAGTGCTCGACGAGGCTGACAGAATGTTTGATATGGGATTTGAGCCACAAGTCCGTTCGATCTGCAACCACGTGCGGCCGGAGCGACAGGCGCTGCTGTTCTCCGCGACCTTCCCGCGCCGCGTGGAGCGACTGGCACGCGACGCGCTGCACGACCCCGTCCGCGTGCAGCACGGCGCCGCGGGGGAGCCGGCGCACCTCGTCACGCAGCACGTCCGAATATTCAACAAACCAGAAGAGAAGTGGTCATGGCTGCTCAGTAACTTAGTTGAGTTCCTGTCGGCGGGAAGCGTGCTCATATTCGTTACGAAAAAGCTGGAGGCGGAGCAGACGGCCGCCAACCTGGGCGTGCAGCAGTACGACGCGCTGCTGCTGCACGGGGACATGGAGCAGGCGGACAGGAACAGAGTCATCACGGCCTTCAAGAGGCAGGAGACTAACATACTAGTTGCCACCGACGTTGCCGCCCGCGGCCTGGACATCCCGCACGTGCGCACGGTGGTGAACTACACGGTGGCGCGCGACATCGACACGCACACGCACCGCGTGGGCCGCACGGGGCGCGCCGGCGTGCCGGGCGACGCGCACTCGCTGCTGCTGCGCCAGCACGACCGGGACTTCGCGGGGCACCTGCTGAGGAACCTGGAGGCCGCGCAACAGGTGGTGCCCGACGAGCTTCTGCAGTTGGCGATGCAGTCGGCCTGGTTTAGGAAGTCGCGCTTCAAGAAAGGAAAAGGAAAGAATCTTAACATCGGCGGCTGCGGCTTGGGGTACAAGGAGCGTCCGGGGCTGCCCCCCGCGCCCCCCGCGCCCTGCGAGCCGCACGGGCCCGCCACCGACCGCCTCGCCTCCCTCAAGCAGGCCTTCCGCTCACAGTACAACCAGTTCACAGCGTCGTCAGATCACTCGTGGGAGCAGACGCGGGTCCAGCCCGGGGTCAACGAGCCCGCGCCGCCGCCCGACGACAAGCCCGAGAGGGTCCGGAAGAGCGGCAAGAAGAGCCGCTGGGAGTAG
Protein
MSYPGGGGRGMGFAGFSMPKRNPSNVSLHAVPPPTTSMHAVPPPSSGLSKQGYSTMSAITQNAVTGTWGTLGKKRAKTEDEYFDDDDEPPTPALAYIPAPGSPTNAASSSRADDDDEDPLDAYMAGLEQQAARDLVTSKENAASGKDSVRGTRGDIDDMDDEESYYKYMEENPLNNADDTSDVEIEYDEDGNPLAPAKKKFIDPLPPIDHSEIDYEPFEKNFYTPHEDIEKLTHQQVEELKKNLGVKITGPDPPRPVSSFAHLGFDEQLMRAIRRSEYTQPTPVQAAGVPAALSGRDIIGIARTGSGKTCAFLWPLLVHIMDQKELAPGDGPIGLILAPTRELAQQIYMEAKKFGKVYNIRCVCCYGGGSKWEQVKALEGGGAEIIVGTPGRVIDLVKCKATNLQRVTYLVLDEADRMFDMGFEPQVRSICNHVRPERQALLFSATFPRRVERLARDALHDPVRVQHGAAGEPAHLVTQHVRIFNKPEEKWSWLLSNLVEFLSAGSVLIFVTKKLEAEQTAANLGVQQYDALLLHGDMEQADRNRVITAFKRQETNILVATDVAARGLDIPHVRTVVNYTVARDIDTHTHRVGRTGRAGVPGDAHSLLLRQHDRDFAGHLLRNLEAAQQVVPDELLQLAMQSAWFRKSRFKKGKGKNLNIGGCGLGYKERPGLPPAPPAPCEPHGPATDRLASLKQAFRSQYNQFTASSDHSWEQTRVQPGVNEPAPPPDDKPERVRKSGKKSRWE

Summary

Similarity
Belongs to the DEAD box helicase family.
EMBL
ODYU01009206    SOQ53467.1    RSAL01000285    RVE42966.1    NWSH01000843    PCG73885.1    + More
KQ459595    KPI95768.1    AGBW02012233    OWR45378.1    GAIX01011981    JAA80579.1    KQ461192    KPJ07062.1    GECZ01011317    JAS58452.1    KQ977279    KYN04114.1    GL762800    EFZ20748.1    KK107145    QOIP01000010    EZA57506.1    RLU17615.1    KQ976435    KYM87029.1    LBMM01000963    KMQ97147.1    KQ978615    KYN29853.1    KQ981382    KYN42281.1    GL449185    EFN83169.1    GL434781    EFN74538.1    KQ982959    KYQ48728.1    KA648219    AFP62848.1    KQ414646    KOC66412.1    KQ435700    KOX80455.1    NEVH01025135    PNF15835.1    GEDC01028474    GEDC01021097    GEDC01020662    GEDC01013018    JAS08824.1    JAS16201.1    JAS16636.1    JAS24280.1    CH477214    EAT47577.1    KQ434890    KZC10465.1    KK853329    KDR08431.1    KZ288334    PBC27883.1    GEBQ01008189    JAT31788.1    NNAY01002628    OXU20904.1    GAMC01005378    JAC01178.1    JRES01000052    KNC34549.1    GBXI01003880    JAD10412.1    DS235813    EEB17484.1    GFDF01008313    JAV05771.1    GBYB01014551    JAG84318.1    GL888177    EGI65860.1    JXUM01034413    KQ561022    KXJ79995.1    AJWK01035581    GAKP01015556    JAC43396.1    JXUM01035271    JXUM01035272    KQ561053    KXJ79862.1    JXJN01019584    CCAG010001205    GFDL01003204    JAV31841.1    CH940647    EDW69567.1    AXCM01006343    CH933809    EDW18519.1    ACPB03016099    GECL01002086    JAP04038.1    GECU01028031    JAS79675.1    GBGD01000601    JAC88288.1    GGMS01016055    MBY85258.1    AXCN02002425    CH916366    EDV97764.1    GFTR01007879    JAW08547.1    GBBI01002457    JAC16255.1    CH480815    EDW41009.1    ABLF02035107    CH982632    CM002912    EDX15712.1    KMY98885.1    AE014296    AY061400    AAF50131.1    AAL28948.1    ATLV01020948    KE525310    KFB45936.1    CVRI01000015    CRK90017.1    UFQS01001098    UFQT01001098    SSX09006.1    SSX28917.1    ADMH02000343    ETN66901.1    CH954178    EDV51331.1    OUUW01000009    SPP84980.1    CM000159    EDW94043.1    CP012525    ALC44096.1    CH379069    EAL31160.1    CH479215    EDW33504.1    GFDF01008680    JAV05404.1    IAAA01011294    LAA04817.1    CH902618    EDV40648.1    GFXV01005758    MBW17563.1    GDHC01018346    JAQ00283.1    QCYY01003249    ROT64456.1    PYGN01002487    PSN30406.1    GGFK01008156    MBW41477.1    GEZM01060745    JAV70935.1   
Pfam
PF00271   Helicase_C        + More
PF00270   DEAD
PF10283   zf-CCHH
PF10228   DUF2228
Interpro
IPR027417   P-loop_NTPase        + More
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR020719   RNA3'_term_phos_cycl-like_CS       
IPR019406   APLF_PBZ       
IPR019361   HPF1       
SUPFAM
SSF52540   SSF52540       
PDB
4LK2     E-value=8.02143e-73,     Score=699

Ontologies

Topology

Length:
746
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.07472
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.00010
outside
1  -  746
 
 

Population Genetic Test Statistics

Pi
19.163632
Theta
18.699966
Tajima's D
-0.658131
CLR
20.618803
CSRT
0.203789810509475
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28467696 SEVSSTIAEPIEEPETK 95.24 6e-07
28556443 IVEMLIK 100.00 1e-04
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