Gene

KWMTBOMO04780

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(-):14821879-14822737      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.387 Nuclear   Reliability : 1.409

CDS

ATGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATCCGCACCGTCTCGTTCGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCTGGCGCGGCGGAAGTTCGAGCGCGAAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGGGTGACGCAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCTCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTTGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGTGGCGGAACGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGGGCCGGGGGTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MSAARDCGQGGSWIRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSDWVNRDRGRLTFRVTQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFAEQRRVLVAKIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEVAERESSSSLSAPCRRRRAGGRRRAFVQLQPL

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   + More
A0A0J7K2M2   A0A0J7N1D9   A0A2W1C3J5   Q8MY27   A0A3L8DDS1   Q8MY33   Q8MY31   A0A0J7MZM4   A0A3S2LNH8   Q8MY35   A0A0J7KJB9   A0A2H1WNZ5   A0A0J7KS67   A0A0J7N7H9   A0A3S2N998   A0A3S2NGT9   A0A2H1VYR8   A0A0J7KIY5   A0A0J7N7S8   A0A0J7JXN3   A0A0J7KCQ3   A0A0J7KJ07   O01419   A0A194R5D3   A0A0J7KIW1   A0A0J7KYD2   A0A0J7NEG9   A0A0J7KJH4   A0A0J7KJG6   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KLT9   A0A0J7KM81   A0A3L8DIL1   A0A0J7KIM6  

Pubmed

12644555    28756777    30249741    9092665    26354079   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    KZ150308    PZC71477.1    KZ149950    PZC76665.1    LBMM01016102    KMQ84557.1    LBMM01012027    KMQ86470.1    KZ149896    PZC78733.1    AB078935    BAC06462.1    QOIP01000009    RLU18544.1    AB078930    BAC06454.1    AB078931    BAC06456.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    RSAL01003504    RVE40273.1    AB078929    BAC06452.1    LBMM01006538    KMQ90523.1    ODYU01009945    SOQ54696.1    LBMM01003679    KMQ93242.1    LBMM01008861    KMQ88580.1    RSAL01000481    RVE41577.1    RSAL01000109    RVE47213.1    ODYU01005282    SOQ45985.1    LBMM01006954    KMQ90166.1    LBMM01008682    KMQ88705.1    LBMM01024024    KMQ82631.1    LBMM01009494    KMQ88097.1    LBMM01006662    KMQ90413.1    D85594    BAA19776.1    KQ460685    KPJ12887.1    LBMM01006725    KMQ90373.1    LBMM01002052    KMQ95336.1    LBMM01006110    KMQ90925.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01005733    KMQ91252.1    LBMM01005634    KMQ91349.1    QOIP01000007    RLU20280.1    LBMM01007036    KMQ90099.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000053240   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF01421   Reprolysin
PF07776   zf-AD
PF00096   zf-C2H2
PF00732   GMC_oxred_N
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF51905   SSF51905       

Gene 3D

3.60.10.10     3.40.390.10     3.50.50.60    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   + More
A0A0J7K2M2   A0A0J7N1D9   A0A2W1C3J5   Q8MY27   A0A3L8DDS1   Q8MY33   Q8MY31   A0A0J7MZM4   A0A3S2LNH8   Q8MY35   A0A0J7KJB9   A0A2H1WNZ5   A0A0J7KS67   A0A0J7N7H9   A0A3S2N998   A0A3S2NGT9   A0A2H1VYR8   A0A0J7KIY5   A0A0J7N7S8   A0A0J7JXN3   A0A0J7KCQ3   A0A0J7KJ07   O01419   A0A194R5D3   A0A0J7KIW1   A0A0J7KYD2   A0A0J7NEG9   A0A0J7KJH4   A0A0J7KJG6   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KLT9   A0A0J7KM81   A0A3L8DIL1   A0A0J7KIM6  

KEGG

101743754    no KO assigned | (RefSeq) uncharacterized LOC101743754

GO

GO:0003964   GO:0016746   GO:0016021   GO:0050660   GO:0016614  

Length:

237

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06642

Exp number, first 60 AAs:

0.03458

Total prob of N-in:

0.09468

outside

1  -  237

 

 

Pi

0

Theta

0

Tajima's D

-2.086346

CLR

31.296559

CSRT

0

Interpretation

Uncertain