Gene

KWMTBOMO04778

Pre Gene Modal

BGIBMGA009894

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_1_homolog_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr8(+):14721608-14777122      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.442 PlasmaMembrane   Reliability : 1.66

CDS

ATGTTTTTCGGACGATTATTGTTCACTGTGTTCTGCCTTGAAATAGAAGTTTTTTCTTTCCTCGGGGCTGAAGATGTGAACATACGTGAAGTCTTTGCAGACAAGGGAACCATAAACGTAACAATACCGTGTGGGGAGCTCCTTACTGTACCACCCCCTAATGTGCAATGGGTGCACAGGGGCCACAAGACTCATCACAATGTTTTGGCTGACGGTAGTCTGCTCCTGAAGAAGATAGGAACCGAAGACGCTGGACTATACGAGTGCAGTCTTGAAAATGAGACAGATTATGTCGACAGGGTCAACTTGACCGTACGAACGGAGCCCCCGCCTCTAGTGAACGTTACCGTCCATTCCTCGACTATCCTCGCTCTGATCCTCTGGAACGTGGCCGGAGACGGTGGTCATCCCATCATAGATTTCACCGCTCAGTATAGATCGGCGATGCCAGTCAACGGGACATTGGAACCGTGGAGGCCAATCAGCCCCAATCACATTAGTCCTAATTCGCGTCAGATCGACGTGTACCATTTGGAGCCGAACGCCTCGTACTGGTTCCGAGTTTGGGCGACGAACGTGCTTGGACCGGGCCCCCCAGTCGAAGTGCTCGCTACAACCCTGTACAGTGATCAGGAAGCAGAGCTGTACAAACACTTCCTAGAGGGCGTCGAGACCTTCGACACGAGGACGTGGGTGGCGGCAGTCTGCGTGGTGATGGGCACGCTGCTGGTGCTCGCGGTCGGCACCTGCGCCGTGCTCTGCCGCGAGTGGCGACGCACCGATTACGGGGACGATCAGGATTTAATTGAACTAGTGCCTAACATCATTCTGAATCCGGGCTTCATGGAAATGGACCCGATTCGACCGCGGGAGGTGTTCGGCGGCTCGATCATCAGGTCGACGGAGTGTCCGGGCCCGGGGAAGCCGAGGAGGGTTTGA

Protein

MFFGRLLFTVFCLEIEVFSFLGAEDVNIREVFADKGTINVTIPCGELLTVPPPNVQWVHRGHKTHHNVLADGSLLLKKIGTEDAGLYECSLENETDYVDRVNLTVRTEPPPLVNVTVHSSTILALILWNVAGDGGHPIIDFTAQYRSAMPVNGTLEPWRPISPNHISPNSRQIDVYHLEPNASYWFRVWATNVLGPGPPVEVLATTLYSDQEAELYKHFLEGVETFDTRTWVAAVCVVMGTLLVLAVGTCAVLCREWRRTDYGDDQDLIELVPNIILNPGFMEMDPIRPREVFGGSIIRSTECPGPGKPRRV

Uniprot

A0A0L7KNK7   A0A0C9RVI2   A0A310SSJ9   A0A0N0BC44   E9II58   A0A2A3EPH9   + More
V9IB04   A0A088AVS3   A0A0L7RJI4   A0A1B6MCC7   E1ZVC3   F4WJ76   A0A195CAL8   A0A151WVK8   K7IQ30   A0A151J6M4   V9I8T8   A0A158NED5   A0A195FLE3   A0A232EQ26   D6WG58   A0A1B6CI39   A0A026W7A0   A0A139WLU6   A0A154PP94   A0A146LAC8   A0A0J7KJZ0   A0A139WLH5   A0A067R238   A0A1Y1JZU3   A0A1B6L4W2   A0A023F994   A0A1B6CS62   A0A2J7PQ85   A0A1Y1JZS2   A0A0C9RMZ1   R4FK07   A0A2R7W702   A0A195BX30   A0A1W4WNG2   A0A0T6BAJ0   U4UI36   N6SXP6   A0A182M9R5   A0A226DH64   A0A1B0D4C9   A0A1S3D080   A0A1W4WCF9   A0A0Q9WD13   A0A034WUK1   A0A1B0CRF5   A0A0P8XIR6   A0A0Q5T386   M9NDT2   A0A0M3QZH2   A0A0R1EBX1   A0A087T9Z2   A0A0P5FYM6   A0A0P5EDP6   A0A2S2PUX7   A0A2H8TDB9   A0A2S2N6M2   A0A0Q9WEG6  

Pubmed

26227816    21282665    20798317    21719571    20075255    21347285    + More
28648823    18362917    19820115    24508170    26823975    24845553    28004739    25474469    23537049    17994087    25348373    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304   

EMBL

JTDY01008231    KOB64670.1    GBYB01012940    JAG82707.1    KQ759817    OAD62777.1    + More
KQ435922    KOX68468.1    GL763358    EFZ19742.1    KZ288198    PBC33665.1    JR036963    AEY57504.1    KQ414582    KOC70886.1    GEBQ01006394    JAT33583.1    GL434492    EFN74833.1    GL888182    EGI65654.1    KQ978023    KYM97862.1    KQ982696    KYQ51969.1    KQ979851    KYN18855.1    JR036964    AEY57505.1    ADTU01013259    KQ981490    KYN41082.1    NNAY01002839    OXU20460.1    KQ971320    EFA00199.2    GEDC01024162    GEDC01001125    JAS13136.1    JAS36173.1    KK107388    EZA51496.1    KYB28801.1    KQ434998    KZC13274.1    GDHC01015049    JAQ03580.1    LBMM01006261    KMQ90758.1    KYB28800.1    KK853076    KDR11737.1    GEZM01099417    GEZM01099416    GEZM01099407    GEZM01099406    JAV53340.1    GEBQ01021250    JAT18727.1    GBBI01001229    JAC17483.1    GEDC01021047    GEDC01009219    GEDC01007485    JAS16251.1    JAS28079.1    JAS29813.1    NEVH01022640    PNF18499.1    GEZM01099422    GEZM01099420    GEZM01099419    JAV53320.1    GBYB01008431    JAG78198.1    ACPB03005595    ACPB03005596    ACPB03005597    GAHY01002068    JAA75442.1    KK854268    PTY13985.1    KQ976401    KYM92516.1    LJIG01002595    KRT84345.1    KB632366    ERL93644.1    APGK01052900    KB741216    ENN72529.1    AXCM01002508    LNIX01000020    OXA44037.1    AJVK01011359    AJVK01011360    AJVK01011361    AJVK01011362    AJVK01011363    AJVK01011364    AJVK01011365    AJVK01011366    CH940651    KRF82520.1    GAKP01001072    JAC57880.1    AJWK01024713    AJWK01024714    CH902635    KPU74720.1    CH954180    KQS29874.1    KQS29875.1    AE014298    AFH07317.1    CP012528    ALC49369.1    CM000162    KRK07000.1    KRK07002.1    KK114222    KFM61931.1    GDIQ01253903    JAJ97821.1    GDIP01144354    LRGB01001361    JAJ79048.1    KZS12612.1    GGMR01020515    MBY33134.1    GFXV01000279    MBW12084.1    GGMR01000151    MBY12770.1    KRF82518.1   

Proteomes

UP000037510    UP000053105    UP000242457    UP000005203    UP000053825    UP000000311    + More
UP000007755    UP000078542    UP000075809    UP000002358    UP000078492    UP000005205    UP000078541    UP000215335    UP000007266    UP000053097    UP000076502    UP000036403    UP000027135    UP000235965    UP000015103    UP000078540    UP000192223    UP000030742    UP000019118    UP000075883    UP000198287    UP000092462    UP000079169    UP000008792    UP000092461    UP000007801    UP000008711    UP000000803    UP000092553    UP000002282    UP000054359    UP000076858   

PRIDE

M9NDT2   

Pfam

PF13895   Ig_2        + More
PF07679   I-set
PF00047   ig
PF00041   fn3
PF02862   DDHD
PF02121   IP_trans

Interpro

IPR013783   Ig-like_fold        + More
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR036179   Ig-like_dom_sf       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013098   Ig_I-set       
IPR003598   Ig_sub2       
IPR013151   Immunoglobulin       
IPR033027   DSCAM_chordates       
IPR032983   CDO       
IPR023393   START-like_dom_sf       
IPR036412   HAD-like_sf       
IPR031315   LNS2/PITP       
IPR004177   DDHD_dom       
IPR001666   PI_transfer       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF56784   SSF56784       

Gene 3D

2.60.40.10     3.30.530.20    

CDD

cd00063  FN3

ProteinModelPortal

A0A0L7KNK7   A0A0C9RVI2   A0A310SSJ9   A0A0N0BC44   E9II58   A0A2A3EPH9   + More
V9IB04   A0A088AVS3   A0A0L7RJI4   A0A1B6MCC7   E1ZVC3   F4WJ76   A0A195CAL8   A0A151WVK8   K7IQ30   A0A151J6M4   V9I8T8   A0A158NED5   A0A195FLE3   A0A232EQ26   D6WG58   A0A1B6CI39   A0A026W7A0   A0A139WLU6   A0A154PP94   A0A146LAC8   A0A0J7KJZ0   A0A139WLH5   A0A067R238   A0A1Y1JZU3   A0A1B6L4W2   A0A023F994   A0A1B6CS62   A0A2J7PQ85   A0A1Y1JZS2   A0A0C9RMZ1   R4FK07   A0A2R7W702   A0A195BX30   A0A1W4WNG2   A0A0T6BAJ0   U4UI36   N6SXP6   A0A182M9R5   A0A226DH64   A0A1B0D4C9   A0A1S3D080   A0A1W4WCF9   A0A0Q9WD13   A0A034WUK1   A0A1B0CRF5   A0A0P8XIR6   A0A0Q5T386   M9NDT2   A0A0M3QZH2   A0A0R1EBX1   A0A087T9Z2   A0A0P5FYM6   A0A0P5EDP6   A0A2S2PUX7   A0A2H8TDB9   A0A2S2N6M2   A0A0Q9WEG6  

PDB

5I99     E-value=6.9051e-07,     Score=126

KEGG

101743581    no KO assigned | (RefSeq) contactin-1a

GO

GO:0016021   GO:0046872   GO:0005548   GO:0005515   GO:0005730   GO:0042254   GO:0004672   GO:0005524   GO:0006468   GO:0006032   GO:0016742   GO:0003824  

PANTHER

PTHR10075:SF51   PTHR44170:SF1   PTHR10658  

SignalP

Position:   1 - 19,         Likelihood:  0.782662

 

 

Length:

312

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.20036

Exp number, first 60 AAs:

0.12634

Total prob of N-in:

0.01894

outside

1  -  230

TMhelix

231  -  253

inside

254  -  312

 

 

Pi

24.426129

Theta

23.018966

Tajima's D

0

CLR

1.703882

CSRT

0.370081495925204

Interpretation

Uncertain