SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04769  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009888
Annotation
transformer_2_isoform_A_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.021
 

Sequence

CDS
ATGTCTGATCGAGAGAGAAGTCGTTCGAGGACTCGCAACGGTTCTCGCGAGCCGGTACCGAAACCTGCGGTGATGTCCAGAGGACATAGTCGAAGCCGGTCCAGGACGCCGCCCCCGCCAAAAGCAACTAGCAGAAAATATAGAAGCCCCATGCTAACAAGCGGTCTAACGGTTGATGGTAGGACACACTCCAGATCGCGGTCCCGTTCCGGCTCGGCTCGTCGCGGCTACCGCTCGCGCCACTCGCGCACCCGCTCTCGCTCTTACTCACCCCGGGGCTCATACCGCCGCAGTCATAGTCACAGCCCTATGTCATCCCGGCGCCGTCATCTCGGTGACAGGGTGAGACTTTTGGAAAACCCTACCCCCTCTCGGTGCCTCGGGGTTTTTGGACTTAGTCTTTATACAACTGAACAGCAGATAAACCATATCTTTTCTAAGTATGGACCCGTTGACAAAGTGCAAGTTGTAATTGATGCAAAGACGGGCCGTTCCCGAGGGTTTTGCTTCGTTTACTTTGAGGACATGGAAGATGCTAAGATTGCAAAGAATGAATGCACCGGAATGGAAATTGACGGTCGTCGCATCCGCGTCGATTATTCCATAACACAGCGAGCTCACACTCCCACTCCGGGCATCTACATGGGAAAACCTACAATAAGTAGCAGAGGCGATAATGGATACGACAGGCGCCGCGACAGAGACGACTACTACTACCGCGGCGGCGGCGGCGGCGGCGGCTACCGCGAGCGCGACTACTACCACCGCGGCTACCGGCACCGCTCGCCCTCGCCGCACTACCGCCGCACGCGACGCTACGAGCGGGAGCGCTCCTACTCGCCCCGTCGTTATTAG
Protein
MSDRERSRSRTRNGSREPVPKPAVMSRGHSRSRSRTPPPPKATSRKYRSPMLTSGLTVDGRTHSRSRSRSGSARRGYRSRHSRTRSRSYSPRGSYRRSHSHSPMSSRRRHLGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTPGIYMGKPTISSRGDNGYDRRRDRDDYYYRGGGGGGGYRERDYYHRGYRHRSPSPHYRRTRRYERERSYSPRRY

Summary

Pfam
PF00076   RRM_1
Interpro
IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
SUPFAM
SSF54928   SSF54928       
Gene 3D
ProteinModelPortal
PDB
2RRB     E-value=2.37571e-27,     Score=302

Ontologies

Topology

Length:
284
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0039
Exp number, first 60 AAs:
0
Total prob of N-in:
0.26586
outside
1  -  284
 
 

Population Genetic Test Statistics

Pi
27.539345
Theta
22.830076
Tajima's D
1.262304
CLR
0.401494
CSRT
0.738963051847408
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 GDWIYPEIIIEPR 100.00 4e-05
28467696 GFCEFEGYITAGEKPSDIVEIR 100.00 4e-05
26822097 VDYSITQR 100.00 0.019
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