Gene

KWMTBOMO04768  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009851

Annotation

PREDICTED:_valine--tRNA_ligase_[Papilio_machaon]

Location

Bomo_Chr8(-):14474590-14492053      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.06

CDS

ATGACTGACAATGAATCCCAAAATACTGGGGAAGATCAGCCGCAGGAGAAAACTGCCAAACAATTGGAAAAAGAAGCTAAGAAAGCTGCTAAGTTAGAAAAACTCAAAGCCAAGCTGGACAAGAAGAGCGCGGCACCAGCTGTTACGAAAGAAAAGCCAGAGAAAAAAATTAAGGAATCAAAAGAAGCGGCAGTGTACACGGCCAACACAGCGCTTGGTGACATGAAGGACATCAGTGGTGCTATGCCCGATGCCTACAGCCCCCGGTATGTTGAGGCTGCATGGTATGCATGGTGGGAGAAACAGGGTTTCTTTAAGCCAGAGTATGGTAGGAAATCAATATTGGATCCCAATCCGAAGGGTAATTTCGTGATGGTTATACCTCCCCCTAATGTCACTGGAACACTGCATCTTGGACATGCACTGACCAACGCCGTTGAAGATGCACTAACTAGGTGGCATAGAATGAATGGGCGTACAACACTTTGGAATCCTGGTTGTGACCATGCCGGAATTGCTACACAAGTTGTGGTAGAAAAGAAGCTTTGGAAAGAAGAGAAAAAAACTCGGCATGAACTTGGCAGAGAAGAGTTCATCAAACGAGTTTGGGACTGGAAGAATGAAAAAGGAGTCCGGATATACGAGCAGCTTCGGTCTCTCGGTTCATCCTACGACTGGTCCAGAGTCCGCTTCACGATGGACCCATCAATGTGCCGAGCTGTTAATGAGGCCTTCATAAGATTGCACGACGCTGGAGACATCTATCGTGCGAACCGATTGGTCAACTGGTCCTGTACGTTGAAGAGCGCTATCTCTGACATAGAAGTAGATAAATTAGAATTGACTGGAAGAACTCTGTTGGCAATACCAGGATATGAACAGAAGGTCGAGTTCGGAGTACTGGTTCACTTTGCGTACAAAGTTGAAGGCTCGGATGAGGAGGTGATAGTGGCTACCACTAGAGTAGAAACTATGCTTGGGGATGTGGCTGTGGCTGTCCACCCTAACGATGCCAGGTATAAACACTTAATTGGCAAGAATTTGACTCATCCAATTTGCAATCGCAAGATGCCCATCATTGCTGATGAATATGTGGACATGGCTTTTGGAACAGGCGCAGTAAAGATCACCCCGGCCCACGACCCCAACGACTACGAGCTCGGCCAGCGGCACAAACTGCCGCTCATCAACATCCTGTCCGACGACGGCACAATGCTCGACAACTGCGGCCCCTTCGCGGGTATGAAACGTTTCGACGTTCGTAAAGCGATTGTCAAGAAGCTCGAGGAGTTGAAACTGTACAAGGAGACCAAGGACAACACCATGGTGGTGCCGCTCTGCAGCCGGTCTAAGGACGTCGTCGAACCGATGCTGAAGCCTCAGTGGTACATCCGTTGCGATAAAATGGCGGCCGACGCTATTGCGGCCGTCAAGACCGGGGAGCTGAAGATTATCCCGGACGTCCACGAGAAGACCTGGTACCACTGGATGGAGAACATTCGAGACTGGTGCATCTCCCGTCAGCTGTGGTGGGGACACAGGATTCCGGCGTACAAAGTCTCACTGCCCGCTGCTCAACAGCATAAAGAAGAAGAATTATGGGTATCTGGTCACACGCAAGAGGAAGCCTTAGCCAAAGCCGTCTCGAAGTTCGGAGTTTCGGCTTCGGAGGTCACGCTGCGTCAGGACGAAGACGTTCTGGACACCTGGTTCTCGTCCGGACTCTTCACCTTCTCAATATTCGGATGGCCCGACGAGACCGACGACTTAAAGGCATTCTATCCTGGGACCCTGTTGGAAACCGGCCACGACATCTTGTTCTTCTGGGTGGCCAGGATGGTGTTCTTCGGACAACGTCTCATGGGGAAGCTGCCTTTCAAAGAGGTATACCTCCACCCGATGGTCCGCGACGCTCACGGCCGGAAGATGTCCAAGTCCCTGGGAAACGTCATCGACCCGGTGGACGTGGTGCGAGGAGTCACCCTCGAGGAGTTGCACCGGCAATTGGAAGACTCTAACTTGGACCCGCGGGAAGTGGAGAAGGCGAAGCAAGGACAGCAGCAGGACTACCCCAACGGCATCCCGGAGTGTGGCACCGATGCGCTCAGGTTCGCTCTGTGCGCGATGACCCAGGGCCGCGACCTCAACCTGGACATCCAGCGCGTGCAGGGCTACCGGTTCTTCTGCAACAAACTCTGGAACGCGACCAAATTCGCCCTCATGTATTTCCCGAAGGACTCCACTTACGAAGTGCACGGCCCTAATCTACCCGCGGACTTGTCGCGCATGGACCGTTGGATGCTGTCCAAGCTCGCGCTCGCGGTCCAGAGAGTGAACGGCGGCTTCGCGGCCTACGAGTTCCCAGCGGCGACCACGCACTGCTACAACCTGTGGCTCTACGACCTGTGCGATGTCTACCTGGAATATCTGAAGCCGGTGTTCGCGTCTGGCGACGAGGAGGAGAAGTCTCGCGCCCGTCGCACCCTGTACACCGCGCTGGAGTACGGCCTGAAGCTGCTTAGTCCCTTCATGCCGTTCGTAACCGAGGAGCTGTTCCAGCGGCTGCCGCGGAGGGACCGGAGCTGCCCGTCCGTCTGCGTCGCGGACTATCCGACGGATCCGGATACGCCATGGCGTTCGCAGGAACTAGAATCGGCAGTGGACACGGTACTCAAAATGGTTCACTTGATCCGTTCGACTCGCGTCGAATACAACCTGACCAACAAACAGAAGACGACAGTACACCTCATCGTGTCCCCGGAACTGGACGCGGCCGACCTGAGAGGGATCTTCAAGAGTCTGCAGTCTCTGGCCAACAGTGAACTGAGCGAAGATGCTCCACCTATAGGATGTGCTATATTGACTGTATCGGACAAGATCGAATTACATTTGGTGTTGAAAGGCCTTATAGACCCGCAAAAGGAAATAACAAAATTGGAAAAGAAGAAGGAAACTCTTTTGCAAACAATCAACAAGCTTCAACAGGCGATGACTGCAGAAGATTATACCACAAAAGTGCCGGTTGAAGTGCAAAAGATCAACACCGAGAAACTGGCTCAATCTCAGGGCGAGATCGAGAAGCTACTGTCCGCCATCGAAACATTAAAACTAATGTAA

Protein

MTDNESQNTGEDQPQEKTAKQLEKEAKKAAKLEKLKAKLDKKSAAPAVTKEKPEKKIKESKEAAVYTANTALGDMKDISGAMPDAYSPRYVEAAWYAWWEKQGFFKPEYGRKSILDPNPKGNFVMVIPPPNVTGTLHLGHALTNAVEDALTRWHRMNGRTTLWNPGCDHAGIATQVVVEKKLWKEEKKTRHELGREEFIKRVWDWKNEKGVRIYEQLRSLGSSYDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHLIGKNLTHPICNRKMPIIADEYVDMAFGTGAVKITPAHDPNDYELGQRHKLPLINILSDDGTMLDNCGPFAGMKRFDVRKAIVKKLEELKLYKETKDNTMVVPLCSRSKDVVEPMLKPQWYIRCDKMAADAIAAVKTGELKIIPDVHEKTWYHWMENIRDWCISRQLWWGHRIPAYKVSLPAAQQHKEEELWVSGHTQEEALAKAVSKFGVSASEVTLRQDEDVLDTWFSSGLFTFSIFGWPDETDDLKAFYPGTLLETGHDILFFWVARMVFFGQRLMGKLPFKEVYLHPMVRDAHGRKMSKSLGNVIDPVDVVRGVTLEELHRQLEDSNLDPREVEKAKQGQQQDYPNGIPECGTDALRFALCAMTQGRDLNLDIQRVQGYRFFCNKLWNATKFALMYFPKDSTYEVHGPNLPADLSRMDRWMLSKLALAVQRVNGGFAAYEFPAATTHCYNLWLYDLCDVYLEYLKPVFASGDEEEKSRARRTLYTALEYGLKLLSPFMPFVTEELFQRLPRRDRSCPSVCVADYPTDPDTPWRSQELESAVDTVLKMVHLIRSTRVEYNLTNKQKTTVHLIVSPELDAADLRGIFKSLQSLANSELSEDAPPIGCAILTVSDKIELHLVLKGLIDPQKEITKLEKKKETLLQTINKLQQAMTAEDYTTKVPVEVQKINTEKLAQSQGEIEKLLSAIETLKLM

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

A0A2H1WJK6   A0A0A1X6A9   B4KUE2   A0A0J9RBP0   A0A0J9RBN5   A0A0J9U0Q3   + More
A0A0J9RBQ3   B4HQ17   T2GFI6   B4LIX6   B4P4T8   Q960E6   Q0E993   A0A0B4KF06   B3NRQ3   A0A0L0BRL0   A0A034V1Z6   T1PE59   K7INT9   A0A1W4UAT9   B4K0G2   B4N5N6   A0A1I8MI08   A0A336LQN1   W8B0S4   B3MDS0   A0A1W4XT17   D7EJ87   A0A182LN81   B4GI90   Q28Z57   Q7PRG1   A0A182XB07   A0A1Q3F4M7   A0A182HX80   A0A0R3NVS1   A0A182M8Y3   A0A1Y1M3S8   A0A182PEU8   A0A182RBE5   A0A182W3R3   A0A2M4BBN4   A0A2M4BBN2   A0A1I8Q0H6   A0A182FM10   A0A1I8Q0L1   A0A182YLY2   A0A2M4A316   A0A2M4A2P7   A0A1S4F797   W5JAS2   A0A2M4BBS6   A0A182S632   A0A182QFD3   A0A2M4A3D5   A0A182GV15   A0A182NDJ6   A0A084VUL7   A0A182IQL0   A0A0A9XD09   A0A0A9XL90   B0WTU3   U5EQK2   A0A2H8TH03   Q17D48   A0A1B6KXT2   A0A182K006   J9JJC7   A0A2J7RJG1   A0A1A9VQ76   T1HMK6   A0A2R7VZZ2   A0A1J1IZ54   A0A1B0ADD1   A0A1B0G7V7   A0A1A9XXU9   A0A3B0J1T2   C3YTK3   A0A3Q1C511   A0A3P8STG7   R7TK59   H2MCT7   A0A3B3DKF8   A0A2B4SFQ8   A0A3B4EBX3   A0A2R5LG30   A0A1B6LT09   A0A3S2M9N7   A0A131XVK0   A0A3P9J4J3   A0A293N7A3   A0A3P9K3G9   A0A224Z9N8   A0A1A9X2G2   A0A0K8VX18   L7M3K3   G3P506   A0A3N0YPQ4   A0A087V044   A0A3B4H8N1  

Pubmed

25830018    17994087    22936249    18057021    17550304    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26108605    25348373    20075255    25315136    24495485    18362917    19820115    20966253    15632085    12364791    23185243    28004739    25244985    20920257    23761445    26483478    24438588    25401762    17510324    18563158    23254933    17554307    29451363    28797301    25576852   

EMBL

ODYU01009094    SOQ53265.1    GBXI01008083    GBXI01007615    JAD06209.1    JAD06677.1    + More
CH933808    EDW10729.1    CM002911    KMY93428.1    KMY93427.1    KMY93430.1    KMY93426.1    KMY93429.1    CH480816    EDW47680.1    BT150333    AGW25615.1    CH940648    EDW60426.1    KRF79413.1    CM000158    EDW90659.1    AY052099    AAK93523.1    AE013599    AAF58412.1    AAM68598.1    AGB93478.1    CH954179    EDV56205.1    KQS62766.1    JRES01001473    KNC22628.1    GAKP01021676    JAC37276.1    KA646430    AFP61059.1    CH916444    EDV95487.1    CH964154    EDW79675.1    UFQT01000117    SSX20366.1    GAMC01011870    JAB94685.1    CH902619    EDV36455.1    KPU76227.1    DS497698    EFA12616.1    CH479183    EDW36210.1    CM000071    EAL25757.1    AAAB01008849    EAA07254.5    GFDL01012531    JAV22514.1    APCN01005148    KRT02518.1    KRT02519.1    AXCM01001040    GEZM01041338    JAV80504.1    GGFJ01001323    MBW50464.1    GGFJ01001289    MBW50430.1    GGFK01001801    MBW35122.1    GGFK01001765    MBW35086.1    ADMH02002024    ETN59935.1    GGFJ01001290    MBW50431.1    AXCN02001759    GGFK01001948    MBW35269.1    JXUM01090168    JXUM01090169    JXUM01090170    JXUM01090171    KQ563822    KXJ73231.1    ATLV01016965    KE525139    KFB41661.1    GBHO01025715    JAG17889.1    GBHO01025714    JAG17890.1    DS232092    EDS34634.1    GANO01003231    JAB56640.1    GFXV01000753    MBW12558.1    CH477300    EAT44272.1    GEBQ01023718    JAT16259.1    ABLF02029343    NEVH01002992    PNF40963.1    ACPB03010288    KK854152    PTY12250.1    CVRI01000060    CRL03873.1    CCAG010021504    OUUW01000001    SPP72882.1    GG666552    EEN56130.1    AMQN01002930    KB310466    ELT91500.1    LSMT01000107    PFX27275.1    GGLE01004345    MBY08471.1    GEBQ01013182    JAT26795.1    CM012452    RVE62807.1    GEFM01004482    JAP71314.1    GFWV01022773    MAA47500.1    GFPF01013275    MAA24421.1    GDHF01009209    JAI43105.1    GACK01007370    JAA57664.1    RJVU01032893    ROL48177.1    KK122555    KFM82983.1   

Proteomes

UP000009192    UP000001292    UP000008792    UP000002282    UP000000803    UP000008711    + More
UP000037069    UP000002358    UP000192221    UP000001070    UP000007798    UP000095301    UP000007801    UP000192223    UP000007266    UP000075882    UP000008744    UP000001819    UP000007062    UP000076407    UP000075840    UP000075883    UP000075885    UP000075900    UP000075920    UP000095300    UP000069272    UP000076408    UP000000673    UP000075901    UP000075886    UP000069940    UP000249989    UP000075884    UP000030765    UP000075880    UP000002320    UP000008820    UP000075881    UP000007819    UP000235965    UP000078200    UP000015103    UP000183832    UP000092445    UP000092444    UP000092443    UP000268350    UP000001554    UP000257160    UP000265080    UP000014760    UP000001038    UP000261560    UP000225706    UP000261440    UP000265200    UP000265180    UP000091820    UP000007635    UP000054359    UP000261460   

PRIDE

Q960E6    Q0E993   

Pfam

PF10458   Val_tRNA-synt_C        + More
PF08264   Anticodon_1
PF00133   tRNA-synt_1
PF00043   GST_C

Interpro

IPR033705   Anticodon_Ia_Val        + More
IPR010978   tRNA-bd_arm       
IPR002303   Valyl-tRNA_ligase       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR014729   Rossmann-like_a/b/a_fold       
IPR002300   aa-tRNA-synth_Ia       
IPR019499   Val-tRNA_synth_tRNA-bd       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR037118   Val-tRNA_synth_C_sf       
IPR001412   aa-tRNA-synth_I_CS       
IPR010987   Glutathione-S-Trfase_C-like       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR004046   GST_C       

SUPFAM

SSF46589   SSF46589        + More
SSF50677   SSF50677       
SSF47323   SSF47323       
SSF47616   SSF47616       

Gene 3D

1.10.287.380     3.40.50.620     3.90.740.10    

CDD

cd07962  Anticodon_Ia_Val

ProteinModelPortal

A0A2H1WJK6   A0A0A1X6A9   B4KUE2   A0A0J9RBP0   A0A0J9RBN5   A0A0J9U0Q3   + More
A0A0J9RBQ3   B4HQ17   T2GFI6   B4LIX6   B4P4T8   Q960E6   Q0E993   A0A0B4KF06   B3NRQ3   A0A0L0BRL0   A0A034V1Z6   T1PE59   K7INT9   A0A1W4UAT9   B4K0G2   B4N5N6   A0A1I8MI08   A0A336LQN1   W8B0S4   B3MDS0   A0A1W4XT17   D7EJ87   A0A182LN81   B4GI90   Q28Z57   Q7PRG1   A0A182XB07   A0A1Q3F4M7   A0A182HX80   A0A0R3NVS1   A0A182M8Y3   A0A1Y1M3S8   A0A182PEU8   A0A182RBE5   A0A182W3R3   A0A2M4BBN4   A0A2M4BBN2   A0A1I8Q0H6   A0A182FM10   A0A1I8Q0L1   A0A182YLY2   A0A2M4A316   A0A2M4A2P7   A0A1S4F797   W5JAS2   A0A2M4BBS6   A0A182S632   A0A182QFD3   A0A2M4A3D5   A0A182GV15   A0A182NDJ6   A0A084VUL7   A0A182IQL0   A0A0A9XD09   A0A0A9XL90   B0WTU3   U5EQK2   A0A2H8TH03   Q17D48   A0A1B6KXT2   A0A182K006   J9JJC7   A0A2J7RJG1   A0A1A9VQ76   T1HMK6   A0A2R7VZZ2   A0A1J1IZ54   A0A1B0ADD1   A0A1B0G7V7   A0A1A9XXU9   A0A3B0J1T2   C3YTK3   A0A3Q1C511   A0A3P8STG7   R7TK59   H2MCT7   A0A3B3DKF8   A0A2B4SFQ8   A0A3B4EBX3   A0A2R5LG30   A0A1B6LT09   A0A3S2M9N7   A0A131XVK0   A0A3P9J4J3   A0A293N7A3   A0A3P9K3G9   A0A224Z9N8   A0A1A9X2G2   A0A0K8VX18   L7M3K3   G3P506   A0A3N0YPQ4   A0A087V044   A0A3B4H8N1  

PDB

1IYW     E-value=1.32016e-155,     Score=1414

KEGG

101737531    K01873 valyl-tRNA synthetase [EC:6.1.1.9] | (RefSeq) valine--tRNA ligase

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0002161   GO:0006438   GO:0004832   GO:0005737   GO:0005524   GO:0004818   GO:0005829   GO:0004812   GO:0006412   GO:0016874   GO:0000166   GO:0006418   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Length:

1038

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01518

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00039

outside

1  -  1038

 

 

Pi

25.855714

Theta

19.804786

Tajima's D

0.037163

CLR

1.206801

CSRT

0.384330783460827

Interpretation

Uncertain