SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04767
Pre Gene Modal
BGIBMGA009852
Annotation
PREDICTED:_AN1-type_zinc_finger_protein_1-like_[Amyelois_transitella]
Full name
AN1-type zinc finger protein 1      
Alternative Name
Zinc finger AN1-type-containing protein 1
Location in the cell
Nuclear   Reliability : 3.02
 

Sequence

CDS
ATGGAATTTCCAACGCTTGGTGAAAATTGCCAATATCCTGGCTGCAACCAAACAGACTTCTTGCCATTACAGTGCAAATGTGCAAAAGTTTTTTGCAGAGAACATTTCAACACTCACTGCCTGTCCGGAGAATGTGAATTAGCACCGCAACCTAAAGAAGTTAATTTAAAGAAAGACGACCAAATTTTCAAATGCTCCGAAAAAAGTTGCAATAAAGGAAACATTCATGAGATGACTTGTTCTAAATGTAATAAACATTTTTGTGTAGAACATAGGTTTCACCCTTCATGTCCAGAAATAGATGATGAGACTCTGGCTGCAAAAATAGAACAATTTGAAGCACCAAAAAGACAATTTAGGGAAGCAAACAAACATTTACAAGGAATGATAACAGAAAACATACGTAAAGCACTACAATCGTCAGCAAAAGTGAAAACGGCATCGAAAATTCACTTGATGAGAATAAAACAGAAAGCCTCCGGCCCGAAAAGCATTCCACCATCTGACCGAGTATACTTCGCCATTAGGAAACCCATCAACATGGACGCCAAACCGCTAAAAATATTACAAGACGAGGACCATCTAATTAAACTAGGAACTTTAGTATTAGAACCAGACTTAAAAGATACAGTCCCAGTTTTTATTAGCACTAAATGGAGCTTAGGTCGGGCTATTGATTGTATTTGTGAGACATGTAATATAAGAAATGATAACAATAAAATAGGAAATATAAAGTTAAGACTGTTCAGGCAACTAGATGGCTATTGTATAAGCCCCACAGCGATGGATGTTGAAATTAATGAGTTGGTAAACAAAGAAATATTGTTGGAAGGTGACCAATTGCTCATTGAATATATCGATAGTAATTCTTTAGCCAGTTTAGATGAGAATGCTCATGTTTTTTTAGTTGTGTAA
Protein
MEFPTLGENCQYPGCNQTDFLPLQCKCAKVFCREHFNTHCLSGECELAPQPKEVNLKKDDQIFKCSEKSCNKGNIHEMTCSKCNKHFCVEHRFHPSCPEIDDETLAAKIEQFEAPKRQFREANKHLQGMITENIRKALQSSAKVKTASKIHLMRIKQKASGPKSIPPSDRVYFAIRKPINMDAKPLKILQDEDHLIKLGTLVLEPDLKDTVPVFISTKWSLGRAIDCICETCNIRNDNNKIGNIKLRLFRQLDGYCISPTAMDVEINELVNKEILLEGDQLLIEYIDSNSLASLDENAHVFLVV

Summary

Description
Plays a role in the regulation of cytoplasmic stress granules (SGs) turnover. SGs are dynamic and transient cytoplasmic ribonucleoprotein assemblies important for cellular protein homeostasis when protein production is suspended after acute exogenous stress (PubMed:29804830). Associates with SGs and is involved in the efficient and specific arsenite-induced clearance process of SGs through the recruitment of the ubiquitin-selective ATPase VCP and the 26S proteasome (PubMed:29804830). This process requires both complexes for efficient degradation of damaged ubiquitinated SG proteins during recovery from arsenite stress, and hence avoiding aberrant cytoplasmic SGs degradation via autophagy (PubMed:29804830).
Subunit
Associates with the 26S proteasome; this association occurs upon exposure to arsenite and is reduced in the presence of ATP (PubMed:29804830). Interacts (via AN1-type 1 and 2 zinc fingers) with PSMD1; this interaction is increased upon arsenite treatment and occurs in an ATP-independent manner (PubMed:29804830). Interacts with PSMC4 (PubMed:29804830). Interacts with PSMA1 (PubMed:29804830). Interacts (via its ubiquitin-like region) with VCP; this interaction occurs in an arsenite-dependent manner and is necessary for the recruitment of the ubiquitin-selective ATPase VCP to stress granules (SGs) (PubMed:29804830).
Keywords
Alternative splicing   Complete proteome   Cytoplasm   Metal-binding   Reference proteome   Repeat   Zinc   Zinc-finger  
Feature
chain  AN1-type zinc finger protein 1
splice variant  In isoform 2.
EMBL
BABH01026621    BABH01026622    ODYU01009094    SOQ53266.1    NWSH01001389    PCG71444.1    + More
GDQN01008943    JAT82111.1    GAIX01004033    JAA88527.1    RSAL01000005    RVE54377.1    AGBW02010040    OWR49310.1    KQ461192    KPJ07034.1    JTDY01000855    KOB75661.1    LJIG01009505    KRT82946.1    GALX01002161    JAB66305.1    GEZM01103074    JAV51573.1    KQ767877    OAD53281.1    AAZX01003377    KQ435706    KOX80274.1    PYGN01000332    PSN48371.1    APGK01054147    APGK01054148    KB741247    ENN72041.1    KQ979039    KYN23333.1    NEVH01005296    PNF38774.1    GECZ01010021    JAS59748.1    KQ414688    KOC63708.1    GECU01030910    GECU01016593    GECU01010854    JAS76796.1    JAS91113.1    JAS96852.1    KK852976    KDR13050.1    GL888033    EGI69105.1    KK107321    QOIP01000002    EZA52697.1    RLU25394.1    KZ288199    PBC33636.1    GL436716    EFN71591.1    KQ434803    KZC05909.1    KQ981909    KYN33206.1    ADTU01000887    KQ977234    KYN04704.1    GL762889    EFZ20587.1    ABLF02031352    KQ976423    KYM88751.1    GL448858    EFN83646.1    GGMS01001191    MBY70394.1    DS235787    EEB17118.1    GBHO01020153    GBHO01020152    GBRD01017311    GDHC01012774    GDHC01000888    JAG23451.1    JAG23452.1    JAG48516.1    JAQ05855.1    JAQ17741.1    KQ983012    KYQ48372.1    GEBQ01027587    JAT12390.1    GECL01001123    JAP05001.1    NNAY01006739    OXU16364.1    KI209939    ERL96114.1    ACPB03007651    GAHY01000597    JAA76913.1    LJIJ01000286    ODM99360.1    GDIP01059768    JAM43947.1    LRGB01001581    KZS11061.1    RQTK01000669    RUS76349.1    CR753886    BC076430    AAH76430.1    GDIP01223648    JAI99753.1    BT079580    ACO14004.1    GDIQ01264885    JAJ86839.1    HACG01029975    HACG01029976    CEK76840.1    CEK76841.1    AHAT01031775    GFTR01004137    JAW12289.1    JW876598    AFP09115.1    AAMC01060263    ABGA01194787    ABGA01194788    GU589210    ADO29162.1    NDHI03003426    PNJ54263.1    GDIQ01249460    JAK02265.1    CM004476    OCT76938.1    AAQR03011381    AAQR03011382    AAQR03011383    GDIQ01251010    JAK00715.1    AAGW02012051    AAGW02012052    HADY01024190    HAEJ01010007    SBP62675.1    GFFW01002916    JAV41872.1    AK024069    CR457323    AK225195    AC132219    BC022251    BC056877    AL833030    HADZ01008076    HAEA01011383    SBQ39863.1    IACJ01109815    LAA56489.1    AADN05000031    AACZ04016161    GABC01010817    GABD01006941    GABE01011359    NBAG03000263    JAA00521.1    JAA26159.1    JAA33380.1    PNI56370.1    AQIB01087604    IACK01110064    IACK01110065    LAA84874.1    GBXM01014496    JAH94081.1    CABD030057890    CABD030057891    AJFE02110617    AJFE02110618    AJFE02110619    GANP01003730    JAB80738.1    AQIA01068354    AHZZ02033899   
Pfam
PF01428   zf-AN1        + More
PF05839   Apc13p
PF14640   TMEM223
Interpro
IPR035896   AN1-like_Znf        + More
IPR000058   Znf_AN1       
IPR008401   Apc13p       
IPR026100   Tmem223       
SUPFAM
SSF118310   SSF118310       
Gene 3D
PDB
1WYS     E-value=0.0452624,     Score=84

Ontologies

Topology

Subcellular location
   Colocalizes with TIA1, G3BP1, VCP and 26S proteasome in cytoplasmic stress granules (SGs) in response to arsenite-induced stress treatment in a VCP-independent manner (PubMed:29804830). Not localized in SGs in response to other heat- oxidative- or osmotic-induced stress treatments. Colocalizes with VCP in cytoplasmic speckles (PubMed:29804830).   With evidence from 3 publications.
Length:
304
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00692
outside
1  -  304
 
 

Population Genetic Test Statistics

Pi
21.71642
Theta
22.803831
Tajima's D
-0.492079
CLR
1.740297
CSRT
0.23998800059997
Interpretation
Uncertain
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