SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04764
Pre Gene Modal
BGIBMGA009886
Annotation
leucine-rich_repeat_G_protein-coupled_receptor_precursor_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.83 PlasmaMembrane   Reliability : 1.325
 

Sequence

CDS
ATGATATTTTTAAGTTTATCGAGTTTAACGTATGATGGTAGTCTTATTCGTACGGAAATACGTGCAAACCAGCCAGTATGCTGTCAGCTAAGCGAAGGTGTCTCTGTGGTGCTGCACCAGACGAACATCACGCGGCTCACAGCGCGAGCCCTACATGCGGCCGGCTACCACTTGCATATTATAGAGCATTTATCGATAATGGGCGCTCCTAAGCTAGAACACGTTGTTGTCGAAGACCTGATAAGGATGCCACGCCTTAAATCATTTTTCATAACCCAAGCGCCGTTATTGCATCGCGTTGCCCCACTCCCCGCCTTGCCGGAGCTACGCACATTCATGATCACGACATCAGGATTGTTGGAGGTGCCGAACCTCAGCCATGTTCACGACAGCAGGAAGGCGAATACGTCGCTCTCCTACCTGCAAGCCATCGATCTAGAAGGGAACCACATAAAGACAATACCGTCGCACGCGCTGCGGGTGCGCGCCGATCAAGTTCTTTGCGCGCTATCTTTTTATGCCACTGGATCTTACCAACGCTTAGTGGGAATGGCTAAATATTTGGGCCAAACGACTGTAAGCAAATGTGTGAAGGAAGTAACAGATGCTCTTGTAACTCCTGCAATTTTAAATACTTTCATAAAATTTCCTTATGCCAGAGCTAACAGAGATGTAATAAGAAACAAATGA
Protein
MIFLSLSSLTYDGSLIRTEIRANQPVCCQLSEGVSVVLHQTNITRLTARALHAAGYHLHIIEHLSIMGAPKLEHVVVEDLIRMPRLKSFFITQAPLLHRVAPLPALPELRTFMITTSGLLEVPNLSHVHDSRKANTSLSYLQAIDLEGNHIKTIPSHALRVRADQVLCALSFYATGSYQRLVGMAKYLGQTTVSKCVKEVTDALVTPAILNTFIKFPYARANRDVIRNK

Summary

Pfam
PF00001   7tm_1
Interpro
IPR017452   GPCR_Rhodpsn_7TM        + More
IPR002131   Gphrmn_rcpt_fam       
IPR000276   GPCR_Rhodpsn       
ProteinModelPortal
PDB
4L3A     E-value=0.0360162,     Score=84

Ontologies

Topology

Length:
229
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.07415
Exp number, first 60 AAs:
0.00088
Total prob of N-in:
0.01171
outside
1  -  229
 
 

Population Genetic Test Statistics

Pi
22.886397
Theta
19.320459
Tajima's D
0.567325
CLR
0.507835
CSRT
0.540272986350682
Interpretation
Uncertain
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