Silkworm Genome Informatics Database

Gene

KWMTBOMO04763 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009854

Annotation

PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr8(-):14373423-14391823 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.518

CDS

ATGGCTGCGACAAGGAAATTACAAGGCGAAATAGAACGTTGTTTAAAAAAAGTAACAGAAGGAGTTGAAACTTTTGAGGACATCTGGCAGAAAGTTCACAATGCGACGAACAGTAATCAAAAGGAAAAATACGAGGCGGACCTTAAGAAGGAGATCAAGAAACTGCAGAGGCTACGCGATCAGATCAAGTCGTGGATTGCCTCTGGGGAGATTAAAGATAAGAGTACACTATTAGAATTTAGGAAACTTATTGAAACACAAATGGAGAGGTTTAAAGTTGTGGAAAGGGAAACGAAAACGAAGGCATACTCAAAAGAAGGGCTTGGGGCGGCACAGAAACTCGATCCTGCTCAGAAGGAAAGAGAAGAAATGTCATCATGGCTCATCTCGTCCATAGACGCTCTAAATTTACAGGTTGATCAATTTGAGTCTGAAGTAGAATCACTATTAGTGGGTAAGAAGAAAAGACTAGACAAAGAGAAACAGGACAGAATGGAGGAGCTCAAACTGAAACTGGAAAAACACAGGTTTCACATAAAAAAACTTGAAACGCTACTAAGGATGCTTGATAACATGTCTGTTGAAGTTGAACAGATAAAAGGTATAAAGGAAGACGTGGAATATTACATAGACTCATCTCTAGAGCCGGGGTTCGAGGAGAACGACTACATATACGACGATATCCAAGGGCTGGACGAGATCGAGCTCAGCGGTGTAGGACCGTCCACCGATTCCAACAACAGCAATGGCTCCGCTGCAACTCCCAACAGTATACTCTCTGGCACAAGTCCTGTAAGAACACCGACGTCAGAAAACCACAATCATTCGACAGATTCAATAGACATAGAAAAGAAAAAGAAAGAAGAGATTATACCTAAACCGGTAAAACCACTGCCGCTCCGTGCGGTGAACGCCAGCGTGGTCGGTAATAGCACGTGTAACGTTAGTTCCTTGCTCAATAACTCCGCAGCCGCAAGCAATAGTACGGGCGTATCTGGCGCGTCCACGCCGAGCAAGCCCGCGCCCAGCCCGCCGCCGCGACCCGCTAACAGCACAGAAGTAGTCGAGAATGGTCCAGTATCAATCACAGCAGCGGTCAACACGACGACGACGCATCTACCGCCTCCCCCCACGCAGCAACCGCCCCCAACGTCGCGGAGTACATCGTCGAGTGGCGGCGCCAGCGCGAGCGTGACGACGTCCCCCCTCACCGTCAACGGCCCCCCTCCCTCCGCGCATCACACGCCGCACCACGCGCTCAACAATGGACGAGTGAGCGAGACGTCGAGCATGTCGGCGGTGAGCGCGTCGAGTGCCACGAGCGCGAGCAGTGCGGCGCACAACACCGCCTCGCTCAAGAGCATGGCGCAGGAGGCCGTGCACCGCGCCGGTCTGGACCTGCACCACCAGAACACGAGACGGAGTACGGCAATAGCGCAAGCGCACATTCCGCCACTATTAGGAGTCGCGCCCTTAGGACCGCAGCCACTTGACTCGGGCCATCAAGTACAGTTCCAGATGATGGAGTCAGCGTTCTATCACATGCCCCACCCTTCAGACTCGGAACGTACAAGGGTCTACTTGCCTAGGAACATTTGTCGGACTCCTGAATATTACAATCAGGTGTTATTACCCCATTCGGACACGGTAGAGTTCTTCCAGCGGTTGTCGACGGAGACGTTGTTCTTCGTGTTCTACTACATGGAGGGAACGAAAGCGCAGTACCTCGCAGCGAAAGCGCTCAAAAAACAAAGCTGGCGCTTCCATACTAAATACATGATGTGGTTCCAGAGGCACGAGGAACCAAAAGTCATCAACGAGGAATATGAACAGGGCACATACATCTATTTCGACTACGAGAAGTGGGGCCAGCGCAAAAAGGAGGGCTTCACGTTCGAGTACAAGTACTTAGAGGACCGAGACTTGAATTGA

Protein

MAATRKLQGEIERCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASGEIKDKSTLLEFRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEREEMSSWLISSIDALNLQVDQFESEVESLLVGKKKRLDKEKQDRMEELKLKLEKHRFHIKKLETLLRMLDNMSVEVEQIKGIKEDVEYYIDSSLEPGFEENDYIYDDIQGLDEIELSGVGPSTDSNNSNGSAATPNSILSGTSPVRTPTSENHNHSTDSIDIEKKKKEEIIPKPVKPLPLRAVNASVVGNSTCNVSSLLNNSAAASNSTGVSGASTPSKPAPSPPPRPANSTEVVENGPVSITAAVNTTTTHLPPPPTQQPPPTSRSTSSSGGASASVTTSPLTVNGPPPSAHHTPHHALNNGRVSETSSMSAVSASSATSASSAAHNTASLKSMAQEAVHRAGLDLHHQNTRRSTAIAQAHIPPLLGVAPLGPQPLDSGHQVQFQMMESAFYHMPHPSDSERTRVYLPRNICRTPEYYNQVLLPHSDTVEFFQRLSTETLFFVFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRDLN

Uniprot

A0A2H1VQZ7

EMBL

ODYU01003914 SOQ43265.1

Pfam

PF04153 NOT2_3_5 + More
PF04065 Not3

Interpro

IPR040168   Not2/3/5        + More
IPR007207   Not_N
IPR038635   CCR4-NOT_su2/3/5_N_sf
IPR012270   CCR4-NOT_su3/5
IPR007282   NOT2/3/5_C

Gene 3D

2.30.30.1020

ProteinModelPortal

A0A2H1VQZ7

PDB

4C0D E-value=9.50236e-56, Score=551

KEGG

101737241 K12580 CCR4-NOT transcription complex subunit 3 | (RefSeq) CCR4-NOT transcription complex subunit 3

PATHWAY

03018 RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0030015 GO:0005634 GO:0006355 GO:0007018 GO:0008017 GO:0030036 GO:0016020 GO:0035023 GO:0005515 GO:0016742 GO:0003824

PANTHER

PTHR23326

Length:

643

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03471

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00082

outside

1 - 643

Pi

17.834476

Theta

16.952898

Tajima's D

-1.644844

CLR

1.064821

CSRT

0.0421978901054947

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics