Gene

KWMTBOMO04762  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009885

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX47_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr8(+):14358584-14366634      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.185

CDS

ATGACTGCAGACAAGGAAAGCTATGGAGACGAAACCAACCAGGATAGTGAGGTGGAACAAACTCCAACCGAAAATGTCAACGAAGATACTGAAGATGATAAAATAACATTTAAGGATTTGGGAGTTGTAGACGTACTCTGCGAGGCTTGTGAAGAATTGAAATGGAAGAAACCCTCTAAGATTCAAAAAGAAGCTATTCCCGTCGCGTTACTAGGCAAAGATATCATTGGTCTTGCCGAGACAGGTTCTGGTAAGACAGGTGCCTTTGCCCTGCCCATACTTCAAGCACTACTGGAGAACCCGCAGAGATATTTTGCACTTATACTCACACCAACAAGGGAACTGGCATTTCAGATATCAGAACAATTTGAAGCACTTGGTGCAAGCATAGGTGTAAAATGTGCAGTAATAGTTGGTGGTATGGACATGGTGGCACAAGCACTAATGCTATCCAAGAAACCTCACATAATCATCGCCACTCCTGGAAGATTGGTTGACCACCTGGAGAATACCAAGGGATTTAATTTAAGGCCTCTAAAATATTTAGTAATGGATGAAGCGGATAGAATTCTCAACATGGATTTCGAAGTGGAAGTGGACAAGATTCTCCGTGTGATACCAAGAGAACGCCACACTTATCTCTTTTCTGCAACAATGACGAAGAAAGTGCAGAAGCTCCAAAGGGCATCATTACAAGATCCTGTGAAAGTGGAGGTGTCTACAAAGTACCAGACTGTTGATAAGCTTATGCAATCCTACATCTTCATACCTGTTAAGTTTAAGGATGTATACCTAGTTCACATTCTCAACGAGATGGCTGGAAACTCGTTTATCGTCTTCGTCTCGACGTGCGCCGGTGCGCTGCGCTGTGCATTATTGCTCAGAAACTTGGGTCTGGCCGCGGTACCGCTACACGGTCAGATGTCTCAGAATAAACGTCTCGCAGCCCTGAACAAATTCAAGAGCAAATCCAGATCGGTGTTGATCTGTACTGACGTAGCATCCAGAGGTCTGGACATTCCTCACGTGGACGTCGTGATAAACCTGGACATCCCGCTGCACAGCAAGGACTACATCCACCGCGTGGGCCGCACCGCCCGCGCCGGTCGGGCCGGTAAAGCTATCACTTTTGTCACGCAGTACGACGTGGAGTTATACCAGCGAATTGAACAGTTGATCGGGAAACAGCTGCCTTTATACAAGACGGAGGAGAGCGAGGTCATGGTGCTGCAGGAGAGGGTCGCTGAGGCCCAACGTCTCACTAGAATCGAAATGAAAGAACTAGAAGACAAGAAGAGTACGAAGGGTAAGAAGCGAGGTGCCGACTCTGACGACGACACAGAGGATGCGGTCGGAGTCCGCAGACGAATCAAGGGGAAACCTAAACACGCTGGCAAGAAACGGAAACGATGA

Protein

MTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRVIPRERHTYLFSATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNSFIVFVSTCAGALRCALLLRNLGLAAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIGKQLPLYKTEESEVMVLQERVAEAQRLTRIEMKELEDKKSTKGKKRGADSDDDTEDAVGVRRRIKGKPKHAGKKRKR

Similarity

Belongs to the DEAD box helicase family.
Belongs to the TUB family.
Belongs to the enoyl-CoA hydratase/isomerase family.

Uniprot

H9JK34   A0A212FIG4   A0A194PS03   S4NXR9   A0A2H1VSR9   A0A0N0PAJ6   + More
A0A1L4A1S3   A0A1W4WE04   D6WVE7   B4P6Z5   A0A310SN04   A0A0C9R2J3   W8BQX6   A0A1J1HZV0   A0A1B0F9N6   A0A1A9WKS2   E0V9W5   A0A087ZQ19   A0A067QM22   A0A1I8PJ10   A0A0N0U5M2   A0A1J1HKU5   A0A1A9ZDD0   B4KGP2   A0A0Q9XIZ8   A0A154NY33   A0A1A9V9S1   A0A1B0B7P1   A0A0M4EQU0   A0A0L0C5W8   Q8MRB7   Q9VIF6   K7IXD1   A0A1A9XL24   A0A084WG48   Q29NS3   B4GJI5   A0A0L7R179   A0A232F4D8   A0A1Y1LL38   A0A182NBY8   U5EYL8   A0A2A3EHN5   B3MN83   B4JQB9   A0A1W4UI79   A0A3B0K943   B4Q3Y9   A0A1B6CR44   B4IFK8   B3NKU4   A0A1I8N8U9   J9K6I8   A0A1W4UVR9   A0A182Q3X7   Q16HQ7   A0A1S4G0Y5   J3JXB4   A0A0Q9WLS3   A0A2H8U0A3   A0A0A9X4E7   A0A1B6L8N1   A0A2M4AAB4   A0A182F1Q0   A0A2M4BL96   B4MDP0   B4N7D0   A0A034VG68   A0A182MG03   E2AHH5   A0A2M3Z4V9   A0A182KEC6   A0A1B6ILT0   A0A023ET67   A0A0T6B224   A0A182XGC0   F4W650   A0A182WGP0   T1E9Z9   A0A0A1X7Y8   A0A182RQ57   A0A2M3Z519   A0A2M4BLJ6   A0A131XM20   A0A1S4H264   A0A1B6F6D1   A0A182HRR4   Q7Q1G0   A0A182UK67   A0A2M4BLC0   A0A2M4BLB9   A0A195AVQ0   A0A182P326   A0A1S3HIV9   A0A1S3HIM4   A0A182VIW0   A0A158P1X3   W5J772   A0A182YDG7   U4TYP4  

Pubmed

19121390    22118469    26354079    23622113    18362917    19820115    + More
17994087    17550304    24495485    20566863    24845553    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20075255    24438588    15632085    28648823    28004739    22936249    25315136    17510324    22516182    23537049    25401762    26823975    25348373    20798317    24945155    21719571    25830018    28049606    12364791    21347285    20920257    23761445    25244985   

EMBL

BABH01026605    BABH01026606    AGBW02008395    OWR53508.1    KQ459595    KPI95738.1    + More
GAIX01012047    JAA80513.1    ODYU01003914    SOQ43264.1    KQ461192    KPJ07031.1    KU182489    API61864.1    KQ971357    EFA08555.1    CM000158    EDW89964.1    KQ761824    OAD56773.1    GBYB01007062    JAG76829.1    GAMC01002875    JAC03681.1    CVRI01000036    CRK93058.1    CCAG010005373    DS235000    EEB10171.1    KK853162    KDR10427.1    KQ435763    KOX75401.1    CVRI01000009    CRK88653.1    CH933807    EDW13242.1    KRG03635.1    KQ434782    KZC04527.1    JXJN01009696    CP012523    ALC39425.1    JRES01000869    KNC27642.1    AY121677    AAM52004.1    AE014134    BT133459    AAF53963.1    AFH89832.1    AAZX01000018    ATLV01023442    KE525343    KFB49192.1    CH379058    EAL34571.1    CH479184    EDW36801.1    KQ414668    KOC64597.1    NNAY01000980    OXU25631.1    GEZM01052647    JAV74362.1    GANO01001923    JAB57948.1    KZ288254    PBC30709.1    CH902620    EDV31040.1    CH916372    EDV99099.1    OUUW01000006    SPP82146.1    CM000361    CM002910    EDX05705.1    KMY91284.1    GEDC01021358    JAS15940.1    CH480833    EDW46430.1    CH954179    EDV54467.1    ABLF02037377    AXCN02000691    CH478149    EAT33783.1    APGK01035795    BT127883    KB740928    AEE62845.1    ENN77964.1    CH940661    KRF85635.1    GFXV01008158    MBW19963.1    GBHO01028730    GBHO01028729    GBRD01013550    GDHC01015560    GDHC01003395    JAG14874.1    JAG14875.1    JAG52276.1    JAQ03069.1    JAQ15234.1    GEBQ01019910    JAT20067.1    GGFK01004237    MBW37558.1    GGFJ01004699    MBW53840.1    EDW71301.1    CH964182    EDW80271.1    GAKP01018396    GAKP01018394    JAC40558.1    AXCM01008610    GL439539    EFN67130.1    GGFM01002795    MBW23546.1    GECU01019833    JAS87873.1    GAPW01001088    JAC12510.1    LJIG01016242    KRT81189.1    GL887707    EGI70185.1    GAMD01001463    JAB00128.1    GBXI01007472    JAD06820.1    GGFM01002866    MBW23617.1    GGFJ01004692    MBW53833.1    GEFH01001835    JAP66746.1    AAAB01008980    GECZ01024366    JAS45403.1    APCN01001737    EAA14161.4    GGFJ01004704    MBW53845.1    GGFJ01004691    MBW53832.1    KQ976731    KYM76318.1    ADTU01006906    ADMH02002127    ETN58634.1    KB631763    ERL85947.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000192223    UP000007266    + More
UP000002282    UP000183832    UP000092444    UP000091820    UP000009046    UP000005203    UP000027135    UP000095300    UP000053105    UP000092445    UP000009192    UP000076502    UP000078200    UP000092460    UP000092553    UP000037069    UP000000803    UP000002358    UP000092443    UP000030765    UP000001819    UP000008744    UP000053825    UP000215335    UP000075884    UP000242457    UP000007801    UP000001070    UP000192221    UP000268350    UP000000304    UP000001292    UP000008711    UP000095301    UP000007819    UP000075886    UP000008820    UP000019118    UP000008792    UP000069272    UP000007798    UP000075883    UP000000311    UP000075881    UP000076407    UP000007755    UP000075920    UP000075900    UP000075840    UP000007062    UP000075902    UP000078540    UP000075885    UP000085678    UP000075903    UP000005205    UP000000673    UP000076408    UP000030742   

PRIDE

H9JK34    Q8MRB7    Q9VIF6   

Pfam

PF00271   Helicase_C        + More
PF00270   DEAD
PF01167   Tub
PF00378   ECH_1

Interpro

IPR000629   RNA-helicase_DEAD-box_CS        + More
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR027417   P-loop_NTPase       
IPR000007   Tubby_C       
IPR018376   Enoyl-CoA_hyd/isom_CS       
IPR036036   SOCS_box-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR025659   Tubby-like_C       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR001753   Enoyl-CoA_hydra/iso       
IPR001496   SOCS_box       

SUPFAM

SSF52540   SSF52540        + More
SSF54518   SSF54518       
SSF52096   SSF52096       
SSF50978   SSF50978       
SSF158235   SSF158235       

Gene 3D

2.130.10.10     3.20.90.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9JK34   A0A212FIG4   A0A194PS03   S4NXR9   A0A2H1VSR9   A0A0N0PAJ6   + More
A0A1L4A1S3   A0A1W4WE04   D6WVE7   B4P6Z5   A0A310SN04   A0A0C9R2J3   W8BQX6   A0A1J1HZV0   A0A1B0F9N6   A0A1A9WKS2   E0V9W5   A0A087ZQ19   A0A067QM22   A0A1I8PJ10   A0A0N0U5M2   A0A1J1HKU5   A0A1A9ZDD0   B4KGP2   A0A0Q9XIZ8   A0A154NY33   A0A1A9V9S1   A0A1B0B7P1   A0A0M4EQU0   A0A0L0C5W8   Q8MRB7   Q9VIF6   K7IXD1   A0A1A9XL24   A0A084WG48   Q29NS3   B4GJI5   A0A0L7R179   A0A232F4D8   A0A1Y1LL38   A0A182NBY8   U5EYL8   A0A2A3EHN5   B3MN83   B4JQB9   A0A1W4UI79   A0A3B0K943   B4Q3Y9   A0A1B6CR44   B4IFK8   B3NKU4   A0A1I8N8U9   J9K6I8   A0A1W4UVR9   A0A182Q3X7   Q16HQ7   A0A1S4G0Y5   J3JXB4   A0A0Q9WLS3   A0A2H8U0A3   A0A0A9X4E7   A0A1B6L8N1   A0A2M4AAB4   A0A182F1Q0   A0A2M4BL96   B4MDP0   B4N7D0   A0A034VG68   A0A182MG03   E2AHH5   A0A2M3Z4V9   A0A182KEC6   A0A1B6ILT0   A0A023ET67   A0A0T6B224   A0A182XGC0   F4W650   A0A182WGP0   T1E9Z9   A0A0A1X7Y8   A0A182RQ57   A0A2M3Z519   A0A2M4BLJ6   A0A131XM20   A0A1S4H264   A0A1B6F6D1   A0A182HRR4   Q7Q1G0   A0A182UK67   A0A2M4BLC0   A0A2M4BLB9   A0A195AVQ0   A0A182P326   A0A1S3HIV9   A0A1S3HIM4   A0A182VIW0   A0A158P1X3   W5J772   A0A182YDG7   U4TYP4  

PDB

3BER     E-value=2.85113e-94,     Score=882

KEGG

101737096    K14777 ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0003676   GO:0004386   GO:0005524   GO:0003824   GO:0035556   GO:0004004   GO:0007018   GO:0008017   GO:0030036   GO:0016020   GO:0035023   GO:0005515   GO:0016742  

Length:

470

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.24465

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07076

outside

1  -  470

 

 

Pi

4.962698

Theta

14.729203

Tajima's D

-1.535492

CLR

133.617464

CSRT

0.0527973601319934

Interpretation

Uncertain