SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04747
Pre Gene Modal
BGIBMGA012157
Annotation
hypothetical_protein_RR46_02347_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 2.437
 

Sequence

CDS
ATGGATAGAATACGGAGTGAATATGTTAGAGGAAGTCTGAAAGTGGCACCTGCGACAGAGAAGCTGAGAAGTGCGCGTTTGGGATGGTATGGACATGTCATTGTGATGAGACGAAATGAAAATGAGGTTGGTAAGAGAATGTTAACTATGAATGTGGAAGGATATAGAGGAAGAGGTAGACCTAAGAAGAAATGGATGTATTGCGTTAAAGACGATATGGGTAAGAGGGGAGTGAGCGAAGAAATGGTATATGATAGAAGGGTATGGAAGGAGAAAACATGTTGCGCCGACTTCATGTCACTGGGAGAAGGGCAGGATAATGATGAAGAATGGTGTACAGGCATGATACCCTCCGGAATTGAAGGAGGTTTTTATAAACTATCCGATAAGCATTAG
Protein
MDRIRSEYVRGSLKVAPATEKLRSARLGWYGHVIVMRRNENEVGKRMLTMNVEGYRGRGRPKKKWMYCVKDDMGKRGVSEEMVYDRRVWKEKTCCADFMSLGEGQDNDEEWCTGMIPSGIEGGFYKLSDKH

Summary

Pfam
PF00078   RVT_1        + More
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

GO

Topology

Length:
131
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0003
Exp number, first 60 AAs:
0.0003
Total prob of N-in:
0.55526
inside
1  -  131
 
 

Population Genetic Test Statistics

Pi
45.226752
Theta
94.55166
Tajima's D
-0.980483
CLR
0
CSRT
0.140292985350732
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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