Gene

KWMTBOMO04745

Pre Gene Modal

BGIBMGA009879

Annotation

PREDICTED:_CBP80/20-dependent_translation_initiation_factor_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(+):13943870-13993510      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.891

CDS

ATGCAGACTCAATTAGGATCAGGCAATGATCTGCAGAGGAGCTACAGGATCCAGGACTTCGCCACGCCTGGCGTCATCATGAGGGAGCGGAGCTTCGTACGTCCTCAGTCGCATCACAACATGCATCATCACCAGTTTTCAAATAATGGGAAACGACGGAGTATGATCCTCACCAACGCAAAGGGAAAACCGACTCTAGAAATCTACAGACCACCAGACGGCGTGGTGTCAACGAACGCTGGTGCCGCCTGTACGACCACCACGGCGGCCGGCAGTGGTGCTGCGGCCACCAACAAGCTGAATGTGCACGCAAAGGAGTTCACAATGGCGAAACCGATTGACCTACACAACAGAGGGGCATTGGGCGTGGGGTACGCTAGTGTGGGACTGCAGCACTCCAGGTCGGCGGTGCTGCACGCGCAGGTGCCGCCCCACTACCGACCCGTGATGCCGCCTCACGCGCTCCTCAATAGCGCCTCCAGCGGGAACGTGCCACATGCACAGGGGCCACGCGTGCACTTCAAGCTGCAACCACAGACTATCATTCCTGAGAAGAAGAAATCCCCTCCGTCGTCGCTGACGAATGGTAACGGGAAGAGCATCCGTCCACAATCGTTTACACCAGGATTGAAAAGGTCAAAGTCCTTAACGTCAGCGGATGCACTCGCAAGTGGCATGGCGGCCCTGGGTCTGGCAGCCGACGCCGGCGACCTTGGTACATTCCCGCCGGAGATTCAAGAGTGTATTGATAAAGCCCTGGAAGATCCGAATGCTGTGTGCGCCCGTACCCTGATGGACGCTGTGGGGCACCTGGTCTCGCGCGCAGTGGAGTCGCCGCGGTACGCGCTGCCGGCCGCCCGCCGCTGCATCGCCGTGGTTGAGCGCGAGCAGACGGAAACCTTCCTCGAGTCGCTGCTTAACACGTGCCAGCAATGGTACCACGATAGGGACAAGCTGTTGGGCGCGATGATCGGCGGTGGTCGACCTCGGTTGATGGCGTTCCTGTCGTTCTTGCTGGAGATGTACTGCCAGCTGCGGCGCCGGGCCATCCAGCGACGGGGAGCCAGCGCCCAGCCCGGGCACGTGCTGCTCGCGCTCATCTGCAAGTGCTGCGAGGACTGCATCAGGCAGCCGGTGCCTTCTGCTAGTGATACTGAGAATCTGTTCTTCGTACTGACGTACATAGGCCGAGACTTGGAAACTCAGCTACCTGGAGATTTGGAGCGATTACTTACAGCCGTCCGTGACGCTTTCCTCAATACTGCCGCGGCTCCTTCCATCAGGCGTACTTTACTGCAGCTTATAGAGCTTCACGCATCCCGGTGGCAGTTACCAGGATGCGCAGTTCTTTATTACTATCCTTCGTCCAAATAG

Protein

MQTQLGSGNDLQRSYRIQDFATPGVIMRERSFVRPQSHHNMHHHQFSNNGKRRSMILTNAKGKPTLEIYRPPDGVVSTNAGAACTTTTAAGSGAAATNKLNVHAKEFTMAKPIDLHNRGALGVGYASVGLQHSRSAVLHAQVPPHYRPVMPPHALLNSASSGNVPHAQGPRVHFKLQPQTIIPEKKKSPPSSLTNGNGKSIRPQSFTPGLKRSKSLTSADALASGMAALGLAADAGDLGTFPPEIQECIDKALEDPNAVCARTLMDAVGHLVSRAVESPRYALPAARRCIAVVEREQTETFLESLLNTCQQWYHDRDKLLGAMIGGGRPRLMAFLSFLLEMYCQLRRRAIQRRGASAQPGHVLLALICKCCEDCIRQPVPSASDTENLFFVLTYIGRDLETQLPGDLERLLTAVRDAFLNTAAAPSIRRTLLQLIELHASRWQLPGCAVLYYYPSSK

Uniprot

A0A1E1WEH2   A0A1E1WHH8   A0A2H1WG72   A0A212EZ33   A0A0N1IJU5   A0A2A4IV43   + More
A0A1E1WSX9   A0A1E1WA79   A0A0L7L2R9   A0A182MPE6   A0A2J7QJG6   A0A2J7QJG2   A0A182GJK9   Q172D9   A0A182GN41   A0A182X648   A0A182VTL1   D6WN17   Q7Q875   A0A182P2T9   A0A1S4GZY4   A0A182KWL6   A0A182IB70   A0A182UTU3   A0A1Q3FSD6   A0A182NB79   A0A1Q3FM96   A0A182QXP5   A0A1W4X3W6   A0A1Q3FMZ3   A0A1Q3FKR5   A0A1Q3FK00   A0A182Y8J6   N6TAR4   W5JG83   A0A084VMP9   A0A182RVS3   A0A2J7QJG8   A0A1J1I0G1   A0A023EV52   A0A1L8DRX8   A0A2M4A4Q4   A0A1L8DRY9   A0A2J7QJF4   A0A1L8DS70   A0A1B0CB59   A0A2M4A5U3   A0A182J9H4   A0A182F2S0   A0A2M3Z4V6   A0A1Q3FS67   A0A1Q3FSC9   A0A1S4JW10   A0A336LW89   B0WXF6   A0A1Q3FMJ8   A0A1Q3FPT3   A0A1Q3FJL4   A0A1Q3FM49   A0A1Q3FMA1   A0A1Q3FKJ1   A0A2M4BL62   A0A2J7QJF2   K7IRZ3   A0A1Y1K5R5   A0A336LZB5   A0A0L7R8L4   B4MZD2   U5EZD3   A0A154PQD3   A0A232F103   A0A2A3E319   V9IC82   V9IA14   A0A067QYA5   A0A026WLP1   E9IG66   A0A088AIX7   A0A151XB67   A0A195DJ80   A0A1B6E3M5   F4WBV8   A0A195D3K6   A0A195BEB4   A0A195FSP8   B4G7W0   E1ZXA9   A0A158NQQ2   Q29ND8   W8B6J9   A0A1I8PD07   A0A1I8MGK7   A0A0Q9X1P0   A0A1B0FGA5   T1PEU5   A0A0A1XEF7  

Pubmed

22118469    26354079    26227816    26483478    17510324    18362917    + More
19820115    12364791    20966253    25244985    23537049    20920257    23761445    24438588    24945155    20075255    28004739    17994087    28648823    24845553    24508170    21282665    21719571    20798317    21347285    15632085    24495485    25315136    25830018   

EMBL

GDQN01005793    JAT85261.1    GDQN01004609    JAT86445.1    ODYU01008442    SOQ52061.1    + More
AGBW02011376    OWR46759.1    KQ459784    KPJ19960.1    NWSH01007175    PCG63052.1    GDQN01000905    JAT90149.1    GDQN01007283    JAT83771.1    JTDY01003423    KOB69579.1    AXCM01000486    NEVH01013556    PNF28718.1    PNF28717.1    JXUM01068463    KQ562501    KXJ75783.1    CH477441    EAT40846.1    JXUM01075703    JXUM01075704    KQ562901    KXJ74866.1    KQ971343    EFA04338.1    AAAB01008944    EAA10272.3    APCN01000644    GFDL01004526    JAV30519.1    GFDL01006305    JAV28740.1    AXCN02000635    GFDL01006169    JAV28876.1    GFDL01006951    JAV28094.1    GFDL01007095    JAV27950.1    APGK01037602    KB740948    KB632288    ENN77369.1    ERL91485.1    ADMH02001599    ETN61885.1    ATLV01014616    KE524975    KFB39243.1    PNF28716.1    CVRI01000038    CRK93824.1    GAPW01001239    JAC12359.1    GFDF01004861    JAV09223.1    GGFK01002389    MBW35710.1    GFDF01004862    JAV09222.1    PNF28720.1    GFDF01004860    JAV09224.1    AJWK01004845    GGFK01002779    MBW36100.1    GGFM01002806    MBW23557.1    GFDL01004611    JAV30434.1    GFDL01004693    JAV30352.1    UFQT01000229    SSX22080.1    DS232164    EDS36486.1    GFDL01006244    JAV28801.1    GFDL01005562    JAV29483.1    GFDL01007362    JAV27683.1    GFDL01006356    JAV28689.1    GFDL01006368    JAV28677.1    GFDL01006967    JAV28078.1    GGFJ01004668    MBW53809.1    PNF28721.1    GEZM01094204    JAV55811.1    SSX22079.1    KQ414632    KOC67179.1    CH963913    EDW77405.1    GANO01001002    JAB58869.1    KQ434998    KZC13320.1    NNAY01001316    OXU24385.1    KZ288405    PBC26143.1    JR037733    JR037734    AEY57938.1    AEY57939.1    JR037735    AEY57940.1    KK852824    KDR15456.1    KK107154    EZA56873.1    GL762910    EFZ20482.1    KQ982335    KYQ57579.1    KQ980824    KYN12554.1    GEDC01004772    JAS32526.1    GL888066    EGI68386.1    KQ976885    KYN07483.1    KQ976511    KYM82537.1    KQ981280    KYN43471.1    CH479180    EDW28458.1    GL435030    EFN74199.1    ADTU01023460    CH379060    EAL33404.2    GAMC01012328    GAMC01012327    GAMC01012326    JAB94227.1    KRF98667.1    CCAG010000709    KA647261    AFP61890.1    GBXI01004991    JAD09301.1   

Proteomes

UP000007151    UP000053240    UP000218220    UP000037510    UP000075883    UP000235965    + More
UP000069940    UP000249989    UP000008820    UP000076407    UP000075920    UP000007266    UP000007062    UP000075885    UP000075882    UP000075840    UP000075903    UP000075884    UP000075886    UP000192223    UP000076408    UP000019118    UP000030742    UP000000673    UP000030765    UP000075900    UP000183832    UP000092461    UP000075880    UP000069272    UP000002320    UP000002358    UP000053825    UP000007798    UP000076502    UP000215335    UP000242457    UP000027135    UP000053097    UP000005203    UP000075809    UP000078492    UP000007755    UP000078542    UP000078540    UP000078541    UP000008744    UP000000311    UP000005205    UP000001819    UP000095300    UP000095301    UP000092444   

Pfam

PF02854   MIF4G        + More
PF00176   SNF2_N
PF00271   Helicase_C

Interpro

IPR016024   ARM-type_fold        + More
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR000330   SNF2_N       
IPR038718   SNF2-like_sf       
IPR027417   P-loop_NTPase       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       

Gene 3D

1.25.40.180     3.40.50.10810    

CDD

cd00079  HELICc

ProteinModelPortal

A0A1E1WEH2   A0A1E1WHH8   A0A2H1WG72   A0A212EZ33   A0A0N1IJU5   A0A2A4IV43   + More
A0A1E1WSX9   A0A1E1WA79   A0A0L7L2R9   A0A182MPE6   A0A2J7QJG6   A0A2J7QJG2   A0A182GJK9   Q172D9   A0A182GN41   A0A182X648   A0A182VTL1   D6WN17   Q7Q875   A0A182P2T9   A0A1S4GZY4   A0A182KWL6   A0A182IB70   A0A182UTU3   A0A1Q3FSD6   A0A182NB79   A0A1Q3FM96   A0A182QXP5   A0A1W4X3W6   A0A1Q3FMZ3   A0A1Q3FKR5   A0A1Q3FK00   A0A182Y8J6   N6TAR4   W5JG83   A0A084VMP9   A0A182RVS3   A0A2J7QJG8   A0A1J1I0G1   A0A023EV52   A0A1L8DRX8   A0A2M4A4Q4   A0A1L8DRY9   A0A2J7QJF4   A0A1L8DS70   A0A1B0CB59   A0A2M4A5U3   A0A182J9H4   A0A182F2S0   A0A2M3Z4V6   A0A1Q3FS67   A0A1Q3FSC9   A0A1S4JW10   A0A336LW89   B0WXF6   A0A1Q3FMJ8   A0A1Q3FPT3   A0A1Q3FJL4   A0A1Q3FM49   A0A1Q3FMA1   A0A1Q3FKJ1   A0A2M4BL62   A0A2J7QJF2   K7IRZ3   A0A1Y1K5R5   A0A336LZB5   A0A0L7R8L4   B4MZD2   U5EZD3   A0A154PQD3   A0A232F103   A0A2A3E319   V9IC82   V9IA14   A0A067QYA5   A0A026WLP1   E9IG66   A0A088AIX7   A0A151XB67   A0A195DJ80   A0A1B6E3M5   F4WBV8   A0A195D3K6   A0A195BEB4   A0A195FSP8   B4G7W0   E1ZXA9   A0A158NQQ2   Q29ND8   W8B6J9   A0A1I8PD07   A0A1I8MGK7   A0A0Q9X1P0   A0A1B0FGA5   T1PEU5   A0A0A1XEF7  

PDB

4JHK     E-value=8.13272e-06,     Score=119

KEGG

101736129    no KO assigned | (RefSeq) CBP80/20-dependent translation initiation factor

GO

GO:0003723   GO:0003743   GO:0008494   GO:0006446   GO:0005829   GO:0005524   GO:0005515   GO:0005488   GO:0006412   GO:0006511   GO:0016020   GO:0035023   GO:0016742   GO:0003824  

Length:

457

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23563

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00464

outside

1  -  457

 

 

Pi

294.922095

Theta

179.991439

Tajima's D

1.962321

CLR

0.146914

CSRT

0.87815609219539

Interpretation

Uncertain