Gene

KWMTBOMO04742  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009863

Annotation

ribosomal_protein_L27_[Bombyx_mori]

Location

Bomo_Chr8(-):13885317-13887539      View in EpiBrowser

Full name

60S ribosomal protein L27      

Location in the cell

Cytoplasmic   Reliability : 2.288

CDS

ATGGGTAAGATAATGAAGCCGGGTAAAGTAGTGCTGGTCTTAAGTGGCCGGTACGCGGGTCGCAAGGCTATCGTAGTCAAGAATTACGACGAAGGTACCTCCGACAAGCCGTACGGGCATGCTTTCGTCGCTGGTATCGACAGGTACCCCCGGAAAGTGCACAAGAGGATGGGAAAGAATAAAATCCACAAGAGGTCCAAGATAAAGCCTTTCGTGAAGGTTGTAAACTATAATCACTTGATGCCAACACGTTATACAGTTGACTTCAGCTTTGAAAAATTCAGCGCAAAAGACCTGAAAGACCCTGCAAAACGTAAGAAGCTGCGTTTCAACACGCGAGTACGTTTTGAAGAGAGGTACAAAAGTGGGAAGAACAAGTGGTTCTTCCAGAAGCTTAGGTTCTAA

Protein

MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF

Similarity

Belongs to the eukaryotic ribosomal protein eL27 family.

Feature

chain  60S ribosomal protein L27

Uniprot

Q5UAR2   D1LYP3   A7KCY4   G0ZEF7   E7DZ39   A0A2A4JAE1   + More
A0A0L7LTF1   Q962T3   A0A0N1PIE2   A0A212EZ99   I4DIN6   A0A3G1T1L3   A0A2A4B178   A0A3S2LWB8   A0A1E1W9Z3   A0A1E1WRF5   Q6F455   A0A1D1ZGX3   A0A232F984   K7J3C2   A0A2P8XKB8   A0A067QXQ3   A0A0L7QYU8   A0A195B321   A0A158NFZ6   A0A151IQD9   A0A195E7V6   E9J610   A0A195F2A4   A0A151XBY6   Q4GXD2   A0A0M8ZX51   A0A2A3ENB8   V9IFH0   A0A088ACL1   Q56FF5   A0A1B6EIH2   A0A1B6HSV9   Q4GXD1   E2BD88   E2AM05   F4X6H0   A0A154PEN9   D1M818   A0A026X4S6   Q4GXD4   Q4GXD0   Q4GXD3   Q4GXD5   Q4GXC8   A0A1Y1KCQ5   D6X1K1   J3JZB3   N6T4D2   A0A109NIB0   A0A1W4WJV0   T1E2L4   A0A2R7W8Q4   A2I486   A0A1B6DJ27   R4WIC0   B5AKB1   Q16FB1   A0A023EG18   A0A1V1FJP2   A0A2H8TTK8   Q201Y4   A0A0P5KYQ3   A0A0P5I6H5   E7D135   A0A0P5Z152   A0A0P5KHR4   A0A1Q3FB48   B0WG69   A0A164KPF5   E9GPR8   A0A023F8Q2   A0A087V1B6   A0A0N8AH03   A0A226E2X1   A0A0P6H4E1   A0A1J1J6Z5   A0A0P4VNE9   A0A069DNS3   A0A2M4CN45   A0A2M3YXB0   A0A2M3ZYT1   A0A087YW75   A0A182FUU0   B5M6E5   A0A0V0G2R1   A0A2J7RCQ6   T1IDJ3   A0A1D2MT95   W5JRH0   A0A2I9LPL0   Q0PXV6   B6A8F5   T1E7X0   A0A182YJD7  

Pubmed

19121390    17603110    26227816    14668217    26354079    22118469    + More
22651552    28648823    20075255    29403074    24845553    21347285    21282665    20798317    21719571    24508170    30249741    28004739    18362917    19820115    22516182    23537049    24330624    23691247    17510324    24945155    26483478    21292972    25474469    27129103    26334808    20920257    27289101    29248469    25244985   

EMBL

BABH01026575    AY769296    AAV34838.1    GU084317    ACY95350.1    EF207978    + More
ABS57452.1    JF265035    AEL28866.1    HQ424742    ADT80686.1    NWSH01002387    PCG68410.1    JTDY01000159    KOB78521.1    AF400191    ODYU01007027    AAK92163.1    SOQ49407.1    KQ459784    KPJ19955.1    AGBW02011376    OWR46764.1    AK401154    KQ459595    BAM17776.1    KPI95719.1    MG992415    AXY94853.1    NWMT01000012    PCD01444.1    RSAL01000001    RVE55142.1    GDQN01007260    JAT83794.1    GDQN01001445    JAT89609.1    AB180435    BAD26679.1    GDJX01001696    JAT66240.1    NNAY01000679    OXU27019.1    PYGN01001870    PSN32404.1    KK853235    KDR09548.1    KQ414685    KOC63804.1    KQ976662    KYM78589.1    ADTU01014868    KQ976780    KYN08368.1    KQ979568    KYN20922.1    GL768221    EFZ11686.1    KQ981864    KYN34219.1    KQ982314    KYQ57873.1    AM049091    CAJ17391.1    KQ435840    KOX71403.1    KZ288204    PBC33228.1    JR043892    AEY59820.1    AY961545    AAX62447.1    GECZ01032040    JAS37729.1    GECU01029954    JAS77752.1    AM049092    CAJ17392.1    GL447585    EFN86316.1    GL440703    EFN65525.1    GL888818    EGI57930.1    KQ434874    KZC09690.1    GU120442    ACY71292.1    KK107020    QOIP01000004    EZA62424.1    RLU23228.1    AM049089    CAJ17389.1    AM049093    CAJ17393.1    AM049090    CAJ17390.1    AM049088    CAJ17388.1    AM049095    CAJ17395.1    GEZM01090712    JAV57186.1    KQ971370    EFA09345.2    BT128594    KB631843    AEE63551.1    ERL86634.1    APGK01044294    KB741022    ENN74994.1    KC507350    AHB12473.1    GALA01000609    JAA94243.1    KK854316    PTY14575.1    EF070589    ABM55655.1    GEDC01011641    JAS25657.1    AK417130    BAN20345.1    EU855137    ACF72873.1    CH478470    CH477777    EAT32924.1    EAT36314.1    JXUM01103775    JXUM01153090    GAPW01005833    KQ571620    KQ564832    JAC07765.1    KXJ68146.1    KXJ71677.1    AB914564    BAS29559.1    GFXV01004723    MBW16528.1    ABLF02032945    DQ413202    ABD72670.1    GDIQ01185529    JAK66196.1    GDIQ01240866    JAK10859.1    HQ005783    ADV40079.1    GDIQ01242268    GDIP01050576    JAK09457.1    JAM53139.1    GDIQ01185530    JAK66195.1    GFDL01010317    JAV24728.1    DS231923    EDS26765.1    LRGB01003275    KZS03437.1    GL732557    EFX78542.1    GBBI01000926    JAC17786.1    KL820665    KFM83405.1    GDIP01148313    JAJ75089.1    LNIX01000007    OXA51610.1    GDIQ01046082    JAN48655.1    CVRI01000074    CRL08171.1    GDKW01000441    JAI56154.1    GBGD01003419    JAC85470.1    GGFL01002517    MBW66695.1    GGFM01000139    MBW20890.1    GGFK01000338    MBW33659.1    EU979496    ACH48199.1    GECL01003710    JAP02414.1    NEVH01005884    PNF38626.1    ACPB03020263    LJIJ01000607    ODM95915.1    ADMH02000317    ETN66987.1    GFWZ01000330    MBW20320.1    DQ673430    ABG82003.1    DQ875214    ABK29456.1    GAMD01002682    JAA98908.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000007151    UP000053268    + More
UP000243750    UP000283053    UP000215335    UP000002358    UP000245037    UP000027135    UP000053825    UP000078540    UP000005205    UP000078542    UP000078492    UP000078541    UP000075809    UP000053105    UP000242457    UP000005203    UP000008237    UP000000311    UP000007755    UP000076502    UP000053097    UP000279307    UP000007266    UP000030742    UP000019118    UP000192223    UP000008820    UP000069940    UP000249989    UP000007819    UP000002320    UP000076858    UP000000305    UP000054359    UP000198287    UP000183832    UP000069272    UP000235965    UP000015103    UP000094527    UP000000673    UP000079169    UP000076408   

PRIDE

Q5UAR2   

Pfam

PF00467   KOW        + More
PF01777   Ribosomal_L27e
PF14975   DUF4512

Interpro

IPR038655   L27e_sf        + More
IPR041991   KOW_RPL27       
IPR005824   KOW       
IPR001141   Ribosomal_L27e       
IPR008991   Translation_prot_SH3-like_sf       
IPR018262   Ribosomal_L27e_CS       
IPR026776   UPF0729       

SUPFAM

SSF50104   SSF50104       

Gene 3D

2.30.30.770    

CDD

cd06090  KOW_RPL27

ProteinModelPortal

Q5UAR2   D1LYP3   A7KCY4   G0ZEF7   E7DZ39   A0A2A4JAE1   + More
A0A0L7LTF1   Q962T3   A0A0N1PIE2   A0A212EZ99   I4DIN6   A0A3G1T1L3   A0A2A4B178   A0A3S2LWB8   A0A1E1W9Z3   A0A1E1WRF5   Q6F455   A0A1D1ZGX3   A0A232F984   K7J3C2   A0A2P8XKB8   A0A067QXQ3   A0A0L7QYU8   A0A195B321   A0A158NFZ6   A0A151IQD9   A0A195E7V6   E9J610   A0A195F2A4   A0A151XBY6   Q4GXD2   A0A0M8ZX51   A0A2A3ENB8   V9IFH0   A0A088ACL1   Q56FF5   A0A1B6EIH2   A0A1B6HSV9   Q4GXD1   E2BD88   E2AM05   F4X6H0   A0A154PEN9   D1M818   A0A026X4S6   Q4GXD4   Q4GXD0   Q4GXD3   Q4GXD5   Q4GXC8   A0A1Y1KCQ5   D6X1K1   J3JZB3   N6T4D2   A0A109NIB0   A0A1W4WJV0   T1E2L4   A0A2R7W8Q4   A2I486   A0A1B6DJ27   R4WIC0   B5AKB1   Q16FB1   A0A023EG18   A0A1V1FJP2   A0A2H8TTK8   Q201Y4   A0A0P5KYQ3   A0A0P5I6H5   E7D135   A0A0P5Z152   A0A0P5KHR4   A0A1Q3FB48   B0WG69   A0A164KPF5   E9GPR8   A0A023F8Q2   A0A087V1B6   A0A0N8AH03   A0A226E2X1   A0A0P6H4E1   A0A1J1J6Z5   A0A0P4VNE9   A0A069DNS3   A0A2M4CN45   A0A2M3YXB0   A0A2M3ZYT1   A0A087YW75   A0A182FUU0   B5M6E5   A0A0V0G2R1   A0A2J7RCQ6   T1IDJ3   A0A1D2MT95   W5JRH0   A0A2I9LPL0   Q0PXV6   B6A8F5   T1E7X0   A0A182YJD7  

PDB

6IP8     E-value=5.36404e-41,     Score=415

KEGG

692703    K02901 large subunit ribosomal protein L27e | (RefSeq) RpL27; ribosomal protein L27

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0022625   GO:0005622   GO:0006511   GO:0016020   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR10497  

Length:

134

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00304

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.26277

outside

1  -  134

 

 

Pi

393.824962

Theta

216.486301

Tajima's D

2.601495

CLR

0.421945

CSRT

0.951602419879006

Interpretation

Uncertain