SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04736
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon BS      
Alternative Name
Reverse transcriptase
Location in the cell
Mitochondrial   Reliability : 1.366 Nuclear   Reliability : 1.993
 

Sequence

CDS
ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCAACGCTTCCGTTTAGTCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCGTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGCCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATCCGTGCGTACGATAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCACCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCTCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGACGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCTCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAA
Protein
MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPTLPFSPDSIPSPQDTAEAIDIVTSHITSTLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMTNCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSRILIMQEPVTVDALDTSLRIHQIQ

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon BS
EC Number
2.7.7.49
EMBL
U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    GGMS01002955    MBY72158.1    GBBI01004395    JAC14317.1    GFXV01007093    MBW18898.1    ABLF02008463    GFTR01008038    JAW08388.1    RPOV01000134    RPJ78669.1    ABLF02003961    ABLF02059872    GGMR01018716    MBY31335.1    NEVH01006736    PNF36716.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMR01003407    MBY16026.1    GGMS01000737    MBY69940.1    S59870    AAB26437.2    GEZM01053022    JAV74219.1    GBBI01004571    JAC14141.1    GGMS01017914    MBY87117.1    GBBI01001646    JAC17066.1    GGMR01000676    MBY13295.1    ABLF02033757    GGMS01008766    MBY77969.1    GBYB01008290    JAG78057.1    GFTR01008262    JAW08164.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01006721    PNF37225.1    GEZM01038405    JAV81653.1    GEZM01084969    JAV60363.1    NEVH01026386    PNF14434.1    NEVH01020940    PNF20481.1    GGMS01002992    MBY72195.1    ABLF02021177    ABLF02027367    ABLF02066338    GGFJ01001858    MBW50999.1    NEVH01000269    PNF43694.1    GGFJ01001857    MBW50998.1    ABLF02034467    ABLF02024246    GFDF01007661    JAV06423.1    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    NEVH01022639    PNF18527.1    GFTR01008256    JAW08170.1    GGMS01017365    MBY86568.1    NEVH01017542    PNF24034.1    ABLF02028535    ABLF02028545    NWSH01000032    PCG80497.1    ABLF02041767    ABLF02037660    GBBI01001570    JAC17142.1    GFTR01008271    JAW08155.1    NEVH01020071    PNF21969.1    ABLF02020655    ABLF02039168    ABLF02061060    PCG80496.1    GFTR01008251    JAW08175.1    NEVH01023962    PNF17612.1    AY060438    AAL25477.1    GFTR01008246    JAW08180.1    NEVH01010546    PNF32261.1    NEVH01003017    PNF40781.1    GFTR01008279    JAW08147.1    GBGD01000881    JAC88008.1    NEVH01016302    PNF25823.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    GFTR01008151    JAW08275.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GFXV01002840    MBW14645.1    GEZM01074951    JAV64378.1    GGMR01014053    MBY26672.1    GGMR01000857    MBY13476.1    NEVH01001355    PNF42855.1    NEVH01005938    PNF38077.1    GBBI01001642    JAC17070.1    GGMR01003864    MBY16483.1    NEVH01007838    PNF34986.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
702
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.73451
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02630
outside
1  -  702
 
 

Population Genetic Test Statistics

Pi
11.795496
Theta
22.236924
Tajima's D
1.041288
CLR
0
CSRT
0.68161591920404
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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