Silkworm Genome Informatics Database

Gene

KWMTBOMO04720

Pre Gene Modal

BGIBMGA009932

Annotation

PREDICTED:_transcription_factor_HES-4-B-like_[Bombyx_mori]

Location

Bomo_Chr8(-):13169092-13171829 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 4.483

CDS

ATGCCTACCAGTGAAGACGATGATTCGCAAACCGGGTTCATCTCCGAACCAACCCCAGGAATGTCAAAAGCGGAGTTAAGAAAGACGAACAAACCCATAATGGAGAAGAAAAGGCGCGCTCGGATAAACCGCTGTCTGAACGAACTGAAAGACTTGTTGCTGGACTCTGAGAAAGATCCAACTCGTCACTCGAAGCTCGAAAAGGCGGACATCTTGGAGCTTACCGTGAAGCACCTTCAAAAACTTCAGCGCCAGCAGCTGGCGGCCGCGATAGCCGCAGACCCCGCCGTGCTGCAGCGCTTCAAGTCCGGTTTCGGCGACTGCGCGGTCGAGGTACGCCGGTACCTGTCGAGGTTGGCCAGCGTTCCAACCGGACTAAGGCATCGGCTCGGGAACCACCTCACGTCTTGTATATCGGGGATCGAAAGACTGCATCCCCCGGCGGATTACGGGTCACTAGTTCCTGATCCGTTGAGGCTGGACGACGACCGACCGAGCGCCTTCCATTTCGTCAAATCTTTAAGGCCGACCAGTCCGCCTCTGAGTCCGCTGTCCTGCGACTCCGCCTGCGACTCCTCCACTGAACTAGAAACTCCCCCGCGTCCGGTCCAAGCCTTCCCCTTCCCGACGCCGCCGAGCAGGTCCGCGTCGGATCAAGACTCGAGCCCCGAAACCCAAAAACCTACAGTATCTTCAACGACGATATCTCCCGAAACTTTGAAACAGGAAGCATTGAAGACCAAGAAATACATGGAACCTTTGTCCATAGTTATAGACGTTGAAAACTACAAAATAGGGATAGATGCGTCCCCTAAGAGGGCCGTGGATTATTCAATACGGCACAAGCTTAAAAGACCGATGGTCGACTTGACTGGGCCGATACCGAAACTGCCCAGAGTAGACCCGGAGGGGACACCCGTAGTGCCAGAGAAAAGAATGTATCGTTCACCGGAAAAGGTATCTGCCTTCAAGCGAGTACCGGAACGACATCCGGTTTATGTTGAAAGGAGATTGACTATACCCGAAAGTATCCCATCGGTTGGCGAAAGATTATCACTTCCAACGACATCTAGGACGGTCATAAGTCACACGGCGGTATCGTTAGCGCAATCCTCTCGAAAAGACCAAGATAGAGAGACCACGCAAGAGGCCGATACGAGTTCTAAGTCTCCGGGGCAAGGGACATCGAGTGGTTCGGAAATGTGGAGACCCTGGTGA

Protein

MPTSEDDDSQTGFISEPTPGMSKAELRKTNKPIMEKKRRARINRCLNELKDLLLDSEKDPTRHSKLEKADILELTVKHLQKLQRQQLAAAIAADPAVLQRFKSGFGDCAVEVRRYLSRLASVPTGLRHRLGNHLTSCISGIERLHPPADYGSLVPDPLRLDDDRPSAFHFVKSLRPTSPPLSPLSCDSACDSSTELETPPRPVQAFPFPTPPSRSASDQDSSPETQKPTVSSTTISPETLKQEALKTKKYMEPLSIVIDVENYKIGIDASPKRAVDYSIRHKLKRPMVDLTGPIPKLPRVDPEGTPVVPEKRMYRSPEKVSAFKRVPERHPVYVERRLTIPESIPSVGERLSLPTTSRTVISHTAVSLAQSSRKDQDRETTQEADTSSKSPGQGTSSGSEMWRPW

Uniprot

H9JK81 A0A2H1VSN2 A0A194PX31 A0A3S2L641 A0A0N0PEG2 A0A212FAZ6 + More
A0A0L7KU65

Pubmed

19121390 26354079 22118469 26227816

EMBL

BABH01039549 ODYU01004207 SOQ43827.1 KQ459595 KPI95700.1 RSAL01000127 + More
RVE46542.1 KQ459784 KPJ19934.1 AGBW02009397 OWR50914.1 JTDY01005638 KOB66797.1

Proteomes

UP000005204 UP000053268 UP000283053 UP000053240 UP000007151 UP000037510 + More

PRIDE

H9JK81

Pfam

PF00010 HLH + More
PF07527 Hairy_orange

Interpro

IPR003650   Orange_dom        + More
IPR011598   bHLH_dom
IPR036638   HLH_DNA-bd_sf

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

H9JK81 A0A2H1VSN2 A0A194PX31 A0A3S2L641 A0A0N0PEG2 A0A212FAZ6 + More
A0A0L7KU65

PDB

2MH3 E-value=1.37211e-05, Score=116

KEGG

101736360 K09090 hairy and enhancer of split, invertebrate | (RefSeq) transcription factor HES-4-B-like

GO

GO:0046983 GO:0006355 GO:0003677 GO:0005634 GO:0006412 GO:0006511 GO:0016020 GO:0035023 GO:0005515 GO:0016742 GO:0003824

Subcellular location

Nucleus

Length:

405

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00797

outside

1 - 405

Pi

337.257699

Theta

183.948389

Tajima's D

1.496053

CLR

103.681175

CSRT

0.785010749462527

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics