Gene

KWMTBOMO04712  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009934

Annotation

PREDICTED:_28S_ribosomal_protein_S18a?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr8(-):13086448-13087899      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.802 Nuclear   Reliability : 2.26

CDS

ATGGCGGGACTTGTAAGGTTAGGTTACTCTTTAGCAAAAAAATCAATTTTATCCACCACTACTCGAGTTATATCAACTACAAACCAATTAAACATTAAAGAGATACGAGAACGCACTGAAGGAACAAATCTTGTTATTGAAGGAGTTACACTACCTTCTCCCCGCACAGAACTGCTGGTAAGACCGCCAAATGTCACCCCACCGCTGCCGAATATAGATCTCTCGTTGACCAAACTTCCGTCTTCAGAGAAACCTCCATGTTATATGTGTGCATTAGGGTTGGATGTGAAACATACTGATGTACTTATCCTGAGTCAATTTGTAAGATCTGACGGTTGCATGCTACCGAAGCGCATCACGGGCTTGTGTAAAAGACAACAGAAAAAGATTGGGAAAATGGTTTCTATGGCTCAAAAAGCAGGTCTTATGATCAACTTAACTCCATCTAACTCTAAAAAGGATCCAACAAAAAGGAAAGACTACAAGAAATTCAACACTTACTTTGATGAGACCACAATATTTAAGAAGAGGGAAATGCGGTGGACTGAGCGTTTCAAATTCAGGGCTAATGCTAAGTAG

Protein

MAGLVRLGYSLAKKSILSTTTRVISTTNQLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEKPPCYMCALGLDVKHTDVLILSQFVRSDGCMLPKRITGLCKRQQKKIGKMVSMAQKAGLMINLTPSNSKKDPTKRKDYKKFNTYFDETTIFKKREMRWTERFKFRANAK

Uniprot

H9JK83   A0A2H1VSN0   A0A2A4IUZ7   A0A194PQV9   A0A212EZ27   A0A0N0PEI8   + More
A0A0L7LMV4   A0A1I8NSW0   A0A1I8M0W4   A0A1A9X1Z5   B4LZM9   B4KD45   A0A0L0BS38   A0A1W4WE37   A0A1L8ECP1   K7J308   A0A1B0ACB9   A0A232EM98   A0A1B0GGD8   B4JUZ9   A0A0P5FLS9   A0A0P5ZJG1   A0A0P5X6Z1   A0A164VV40   A0A182QT26   A0A1W4W3U1   A0A0N8B0U9   A0A0P5R6S1   A0A182IVK1   A0A0N7ZME8   A0A182UYB9   C4WX39   Q8IGA1   Q9VHQ0   B4QY16   A0A1B0GIV0   B4HLI8   A0A0A9Y4V7   A0A2M4AWM2   B0X8R6   A0A2M4AWE7   A0A1A9YJX3   A0A2M4C2P6   B4GFX2   A0A182XI78   A0A182UFJ2   Q7PGG2   B3N1S7   A0A182HT65   B4PT70   A0A182LF98   A0A0A1WMZ1   A0A2M3ZA46   V5GDK2   A0A2M3ZAP8   A0A182FKX3   A0A182YKG4   D6WR68   A0A1L8E924   A0A1Y1MTQ6   A0A2M3ZIY0   B3P4W5   Q295N6   W5JLN0   A0A182P709   A0A3B0JTM1   A0A1B6KVX7   A0A182MB74   A0A084VSD4   A0A1L8E0W2   E9H9T4   A0A182VX72   A0A2S2PNV7   A0A1Q3FGC3   A0A1L8E0N5   A0A067RWB2   A0A1B6CLE2   A0A182K7C6   A0A1B0BKS5   A0A182R3M2   A0A0K8V4D5   A0A034WSI2   A0A023F7G1   B4N9B1   A0A069DPP8   A0A0P4VVI5   Q172K6   A0A1B6JWQ3   A0A2P8YKE6   A0A182H0R1   R4FJS4   A0A0P5MAB4   A0A023EHM2   A0A0V0G6G9   A0A2R7Y049   E2BSA5   A0A1B6GA39   A0A026WMG1   A0A0K8TRN7   A0A182H140  

Pubmed

19121390    26354079    22118469    26227816    25315136    17994087    + More
26108605    20075255    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25401762    26823975    12364791    14747013    17210077    17550304    20966253    25830018    25244985    18362917    19820115    28004739    15632085    20920257    23761445    24438588    21292972    24845553    25348373    25474469    26334808    27129103    17510324    29403074    26483478    24945155    20798317    24508170    26369729   

EMBL

BABH01039539    ODYU01004207    SOQ43830.1    NWSH01006205    PCG63595.1    KQ459595    + More
KPI95697.1    AGBW02011413    OWR46704.1    KQ459784    KPJ19931.1    JTDY01000562    KOB76664.1    CH940650    EDW67168.1    CH933806    EDW13815.1    JRES01001565    KNC22039.1    GFDG01002355    JAV16444.1    NNAY01003399    OXU19476.1    CCAG010018956    CH916374    EDV91319.1    GDIQ01255986    JAJ95738.1    GDIP01043096    JAM60619.1    GDIP01077368    JAM26347.1    LRGB01001361    KZS12687.1    AXCN02000217    GDIQ01223867    JAK27858.1    GDIQ01104861    JAL46865.1    GDIP01231153    JAI92248.1    ABLF02030603    AK342432    BAH72459.1    BT001883    AAN71657.1    AE014297    BT032661    KX532030    AAF54251.3    ACD81675.1    ANY27840.1    CM000364    EDX13753.1    AJWK01017665    CH480815    EDW43015.1    GBHO01019034    GBRD01009785    GDHC01014847    JAG24570.1    JAG56039.1    JAQ03782.1    GGFK01011781    MBW45102.1    DS232499    EDS42658.1    GGFK01011793    MBW45114.1    GGFJ01010137    MBW59278.1    CH479182    EDW34507.1    AAAB01008859    EAA44943.3    CH902661    EDV34046.2    APCN01000420    CM000160    EDW96531.1    GBXI01014514    JAC99777.1    GGFM01004658    MBW25409.1    GALX01006387    JAB62079.1    GGFM01004865    MBW25616.1    KQ971354    EFA07649.2    GFDG01003578    JAV15221.1    GEZM01021465    JAV88991.1    GGFM01007649    MBW28400.1    CH954181    EDV49909.1    CM000070    EAL28672.1    ADMH02001206    ETN63684.1    OUUW01000008    SPP84403.1    GEBQ01024402    JAT15575.1    AXCM01000752    ATLV01015922    KE525044    KFB40878.1    GFDF01001949    JAV12135.1    GL732609    EFX71554.1    GGMR01018532    MBY31151.1    GFDL01008450    JAV26595.1    GFDF01001952    JAV12132.1    KK852425    KDR24159.1    GEDC01023014    JAS14284.1    JXJN01016007    GDHF01018859    JAI33455.1    GAKP01002255    GAKP01002254    JAC56698.1    GBBI01001573    JAC17139.1    CH964232    EDW80544.1    GBGD01003223    JAC85666.1    GDKW01002968    JAI53627.1    CH477435    EAT40958.1    GECU01004059    JAT03648.1    PYGN01000531    PSN44716.1    JXUM01101737    KQ564671    KXJ71926.1    ACPB03014379    GAHY01002158    JAA75352.1    GDIQ01182224    JAK69501.1    GAPW01005213    JAC08385.1    GECL01002426    JAP03698.1    KK854080    PUA16072.1    GL450157    EFN81418.1    GECZ01010616    JAS59153.1    KK107152    EZA57215.1    GDAI01000574    JAI17029.1    JXUM01102433    KQ564727    KXJ71819.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000095300    UP000095301    UP000091820    UP000008792    UP000009192    UP000037069    UP000192223    UP000002358    UP000092445    UP000215335    UP000092444    UP000001070    UP000076858    UP000075886    UP000192221    UP000075880    UP000075903    UP000007819    UP000000803    UP000000304    UP000092461    UP000001292    UP000002320    UP000092443    UP000008744    UP000076407    UP000075902    UP000007062    UP000007801    UP000075840    UP000002282    UP000075882    UP000069272    UP000076408    UP000007266    UP000008711    UP000001819    UP000000673    UP000075885    UP000268350    UP000075883    UP000030765    UP000000305    UP000075920    UP000027135    UP000075881    UP000092460    UP000075900    UP000007798    UP000008820    UP000245037    UP000069940    UP000249989    UP000015103    UP000008237    UP000053097   

PRIDE

H9JK83    Q8IGA1    Q9VHQ0   

Pfam

PF01084   Ribosomal_S18

Interpro

IPR036870   Ribosomal_S18_sf        + More
IPR001648   Ribosomal_S18       

SUPFAM

SSF46911   SSF46911       

Gene 3D

4.10.640.10    

ProteinModelPortal

H9JK83   A0A2H1VSN0   A0A2A4IUZ7   A0A194PQV9   A0A212EZ27   A0A0N0PEI8   + More
A0A0L7LMV4   A0A1I8NSW0   A0A1I8M0W4   A0A1A9X1Z5   B4LZM9   B4KD45   A0A0L0BS38   A0A1W4WE37   A0A1L8ECP1   K7J308   A0A1B0ACB9   A0A232EM98   A0A1B0GGD8   B4JUZ9   A0A0P5FLS9   A0A0P5ZJG1   A0A0P5X6Z1   A0A164VV40   A0A182QT26   A0A1W4W3U1   A0A0N8B0U9   A0A0P5R6S1   A0A182IVK1   A0A0N7ZME8   A0A182UYB9   C4WX39   Q8IGA1   Q9VHQ0   B4QY16   A0A1B0GIV0   B4HLI8   A0A0A9Y4V7   A0A2M4AWM2   B0X8R6   A0A2M4AWE7   A0A1A9YJX3   A0A2M4C2P6   B4GFX2   A0A182XI78   A0A182UFJ2   Q7PGG2   B3N1S7   A0A182HT65   B4PT70   A0A182LF98   A0A0A1WMZ1   A0A2M3ZA46   V5GDK2   A0A2M3ZAP8   A0A182FKX3   A0A182YKG4   D6WR68   A0A1L8E924   A0A1Y1MTQ6   A0A2M3ZIY0   B3P4W5   Q295N6   W5JLN0   A0A182P709   A0A3B0JTM1   A0A1B6KVX7   A0A182MB74   A0A084VSD4   A0A1L8E0W2   E9H9T4   A0A182VX72   A0A2S2PNV7   A0A1Q3FGC3   A0A1L8E0N5   A0A067RWB2   A0A1B6CLE2   A0A182K7C6   A0A1B0BKS5   A0A182R3M2   A0A0K8V4D5   A0A034WSI2   A0A023F7G1   B4N9B1   A0A069DPP8   A0A0P4VVI5   Q172K6   A0A1B6JWQ3   A0A2P8YKE6   A0A182H0R1   R4FJS4   A0A0P5MAB4   A0A023EHM2   A0A0V0G6G9   A0A2R7Y049   E2BSA5   A0A1B6GA39   A0A026WMG1   A0A0K8TRN7   A0A182H140  

PDB

6NU3     E-value=1.41127e-11,     Score=164

KEGG

101736005    K02963 small subunit ribosomal protein S18 | (RefSeq) 28S ribosomal protein S18a, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0032543   GO:0005763   GO:0070181   GO:0005622   GO:0006511   GO:0016020   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Length:

192

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00434

Exp number, first 60 AAs:

0.00246

Total prob of N-in:

0.06097

outside

1  -  192

 

 

Pi

183.40661

Theta

152.909924

Tajima's D

0.735324

CLR

0

CSRT

0.582120893955302

Interpretation

Uncertain