Gene

KWMTBOMO04704

Pre Gene Modal

BGIBMGA009939

Annotation

PREDICTED:_hemicentin-1_[Bombyx_mori]

Location

Bomo_Chr8(-):12833231-12849353      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.679 Nuclear   Reliability : 1.146 PlasmaMembrane   Reliability : 1.064

CDS

ATGTATTTGCCCGTAGGCATCTACCGTGGTAAATATGAGTGGGCAAACGAGAACAGTCCCGTTGGAGGAGACTGCTCACTTTGGGTACGCGCTGCGACACTTCAGCTTGATGATGGTCAATGGCAGTGTCAAGTTACTGCCAGTAATTATGACGTACAGGACGCCTTATCAAGTCCACCAGCTCCTTTAGCAGTTCGAGTGCCTCCACAATCTCCGAGGATCCTATTCAACGGCTCCCACGTGCTACCAGGCCAAAACATCACAGTTCCAGCGGGGTCCAGAGCGACAGTCGTCTGTGAAGCCAGATATGGCAATCCACCTGCATATATCGAGTGGTATTTAGAAAAAGAACGCCTGACAGCGTGGAGCCAAACCAATGCTTCGGAAGTGGAGCGACCTCGGGTTTGGGCGGCCAGATCCGTGTTGGAACTCGGAGCGACGCGTTCGGCTCACGGCCGGACTTTGGCTTGTAGGGCGCATCACCCTTCTTATCCGGCGCCGTACTACCGGGACTCCTACACGATGCTGGATGTCACTTATGCTCCTGTGGTTTCCATAAACGGCGCCGACGCGAGCACCCTGGCCAATCTGGAGGAAGGTTCCAGTGCTCTATCTCTGGAGTGCAGGGCCAACGGGAACCCTAGCCCTTACGTGTGGTGGACTAGGAACGGACAAGTCATACCCACAAATGGCCCAAAACTGATCCTGGCTCCTATAGTCAGGAATCATTCAGGTATCTATGGATGCCAAGCCCGAAATTCGGCCGGGACCTCCGACTCGGTGAAAATTGAAATTGATGTCAAATATCCACCGAGGGTCACTTGGGTCGGGCCGGACACAGTGGTGGAAGCCAATCTCTTCTCGCAAATTACTTTGGAGTGCAAGGCTGAGGGGAACCCGCCTCCTTCCTACCAGTGGTACCACAGCCCGGGGGGCGCCGCCCGCATCAACGACGCGCAGGAGGAGGGCGTCCCCGTGTCCTCCACGCCGCAGCTGCAGCTGCACAACGTGTCGTACGCGCAGCACGGCCGCTACACCTGCGTCGCCTCCAACCGCATCGGCCTTCAGGACAGGAGTCACCAGTCGGAGGCGATCCGCGTGAACGTGTTGGGTCCGCCGGTGGGGGAGGCGCGGGGGGCGGCGCACGCGTGGCGGGGGGCCGCCGTCCGCCTGCACGCCGCCCTGTGCGCCGACCCGCCGCCGCGCCGCGCCGTCTGGACCTGGGGCAGTCTGCGCCTCGACGTGCCCGGGGAACTAGGTCGTTTTAGTTCGCTGGAACCGTCTTCCGAGAACGGCTGCTACCGGTACACGCTGCTCGTGTCCAATGTGGCGCCGGACGACGCCCGCGCCTACGTGCTGCGCGTCGAGAACGAGCGCGGCTCCTCCACGCACGCCGTGGCGCTCACGGTGCACGATAATTTTTCGCTAACAGAGACGTCGCACGCGGCCCCGCTCGCGGCCGCCGCGCTGGTCTCCGCCGCGCTGCTGGTGCTCGTGCTGTGCCTCGTCGTCAGGTGCAGGAGGAGGAGAGAAAGCGTCGAGTACAAGACTGATGACTTAAATAGCGAGAAGACCGTGCTCCCAGCGGACGCGGTGTACACGCCGCGCGTCCCTGCGAGCCCCCCCGTCCCCCCGAGCGTGGCGGGTCCCCCCGGCCCCCCGGGCGCGGCGGTCCCCCGAGCGGCGACGGGGGGCCGGTACTCCCCGGGCGCGCTGCAGGTCCGGCGCGCGGCCGTGGTGCTGCAGCCGCCCACCACCGTGTGA

Protein

MYLPVGIYRGKYEWANENSPVGGDCSLWVRAATLQLDDGQWQCQVTASNYDVQDALSSPPAPLAVRVPPQSPRILFNGSHVLPGQNITVPAGSRATVVCEARYGNPPAYIEWYLEKERLTAWSQTNASEVERPRVWAARSVLELGATRSAHGRTLACRAHHPSYPAPYYRDSYTMLDVTYAPVVSINGADASTLANLEEGSSALSLECRANGNPSPYVWWTRNGQVIPTNGPKLILAPIVRNHSGIYGCQARNSAGTSDSVKIEIDVKYPPRVTWVGPDTVVEANLFSQITLECKAEGNPPPSYQWYHSPGGAARINDAQEEGVPVSSTPQLQLHNVSYAQHGRYTCVASNRIGLQDRSHQSEAIRVNVLGPPVGEARGAAHAWRGAAVRLHAALCADPPPRRAVWTWGSLRLDVPGELGRFSSLEPSSENGCYRYTLLVSNVAPDDARAYVLRVENERGSSTHAVALTVHDNFSLTETSHAAPLAAAALVSAALLVLVLCLVVRCRRRRESVEYKTDDLNSEKTVLPADAVYTPRVPASPPVPPSVAGPPGPPGAAVPRAATGGRYSPGALQVRRAAVVLQPPTTV

Uniprot

A0A2H1V8C3   A0A3S2NLT4   H9JK88   A0A212FGA5   A0A194PQV4   A0A0N1IAT8   + More
A0A194PSG0   A0A067QK27   A0A182I8N7   A0A182F9A9   A0A182W155   A0A1J1IH42   A0A0L0BPR8   A0A182MD52   A0A182GR80   A0A1I8M182   A0A139WLQ8   A0A084VEE9   B3LZK5   A0A0P9AP37   Q295P3   A0A0N8P1B3   A0A1Y9IZV1   A0A1I8QAT0   A0A0R3NJ28   A0A1W4VTB0   A0A3B0KH40   A0A1D2N0V7   A0A1W4VTZ4   A0A126GUS1   A0A126GUR3   Q9VHQ8   A0A0R3NP57   A0A0R3NQS8   A0A1W4VUN3   A0A1W4VGC4   B5X504   E0W270   A0A182QVU9   Q7QFT8   A0A182XX40   B4KD35   A0A1W4VGL5   B4N9A1   A0A0B4K609   A0A0R1E1N3   A0A0B4K642   A0A034WGA0   A0A1B0B5M4   A0A0A1XJT7   Q9VHR2   W8C0L2   W8B1Y8   B4LZM1   A0A226ETC0   A0A026W2F3   E2AQP1   F5HJC7   E9GS53   A0A0P4YQI9   A0A1B0AC74   A0A154PGV5   A0A0C9RPS0   A0A0C9QBZ9   A0A2A3EJ29   A0A158NE28   A0A088A2P4   A0A151XED5   A0A0L7RBK8   A0A3L8E0B7   A0A0K2VEP7   A0A2P2I5N8   A0A151IF28   A0A195DB68   A0A0C9R6P0   A0A0P4XRC3   A0A0P5BGU0   A0A0P5MWX0   A0A0P5YZD4   A0A0P5BDB4   A0A0P5LB48   A0A1J1IJ21   A0A0P5UTM1   A0A0P5AM18   A0A195BP15   A0A0P6EVR9   A0A0N8AS41   A0A0P5YHC0   A0A164Z592   A0A0P5S452   A0A0P5ICW1   A0A0P5EIR9   A0A0N8C6Z2   A0A0P6EVV5   A0A0P5BF28   A0A0N8EEH0  

Pubmed

19121390    22118469    26354079    24845553    26108605    26483478    + More
25315136    18362917    19820115    24438588    17994087    15632085    27289101    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    20566863    12364791    14747013    17210077    25244985    17550304    25348373    25830018    24495485    24508170    20798317    21292972    21347285    30249741   

EMBL

ODYU01001181    SOQ37046.1    RSAL01000041    RVE50937.1    BABH01039507    BABH01039508    + More
BABH01039509    AGBW02008693    OWR52757.1    KQ459595    KPI95692.1    KQ459784    KPJ19927.1    KPI95694.1    KK853366    KDR08118.1    APCN01003096    CVRI01000051    CRK99539.1    JRES01001565    KNC22052.1    AXCM01000674    JXUM01002001    JXUM01002002    JXUM01002003    JXUM01002004    JXUM01002005    JXUM01002006    JXUM01002007    JXUM01002008    JXUM01002009    KQ560131    KXJ84278.1    KQ971319    KYB28872.1    ATLV01012275    KE524778    KFB36343.1    CH902617    EDV41947.2    KPU79445.1    CM000070    EAL28665.4    KPU79444.1    KRT00935.1    OUUW01000008    SPP84411.1    LJIJ01000310    ODM98937.1    AE014297    ALI30541.1    ALI30540.1    AAF54243.4    KRT00933.1    KRT00934.1    BT046123    ACI46511.1    DS235874    EEB19726.1    AXCN02000345    AAAB01008844    EAA06064.4    CH933806    EDW13805.2    CH964232    EDW80534.2    AFH06307.1    CM000160    KRK03180.1    AFH06308.1    GAKP01005258    JAC53694.1    JXJN01008779    GBXI01002658    JAD11634.1    AAF54239.4    GAMC01011391    JAB95164.1    GAMC01011390    JAB95165.1    CH940650    EDW67160.2    LNIX01000002    OXA60769.1    KK107474    EZA50178.1    GL441804    EFN64230.1    EGK96387.1    EGK96388.1    GL732561    EFX77651.1    GDIP01234565    JAI88836.1    KQ434899    KZC11037.1    GBYB01010475    JAG80242.1    GBYB01011998    JAG81765.1    KZ288252    PBC31031.1    ADTU01012618    ADTU01012619    ADTU01012620    ADTU01012621    ADTU01012622    KQ982254    KYQ58732.1    KQ414617    KOC68131.1    QOIP01000002    RLU25619.1    HACA01031306    CDW48667.1    IACF01003718    LAB69329.1    KQ977830    KYM99406.1    KQ981082    KYN09659.1    GBYB01011999    JAG81766.1    GDIP01239226    GDIQ01174802    GDIQ01059790    JAI84175.1    JAK76923.1    GDIP01199822    JAJ23580.1    GDIP01168925    GDIQ01152317    JAJ54477.1    JAK99408.1    GDIP01052398    JAM51317.1    GDIP01186133    JAJ37269.1    GDIQ01172453    JAK79272.1    CRK99540.1    GDIP01109685    JAL94029.1    GDIP01197374    JAJ26028.1    KQ976424    KYM88257.1    GDIQ01057241    JAN37496.1    GDIQ01248331    GDIQ01090834    JAK03394.1    GDIP01057941    JAM45774.1    LRGB01000781    KZS15954.1    GDIQ01097072    JAL54654.1    GDIQ01219294    JAK32431.1    GDIP01239225    GDIQ01268974    GDIQ01237277    GDIQ01140514    GDIQ01130364    JAI84176.1    JAJ82750.1    GDIQ01108723    JAL43003.1    GDIQ01057240    JAN37497.1    GDIP01186132    JAJ37270.1    GDIQ01034708    JAN60029.1   

Proteomes

UP000283053    UP000005204    UP000007151    UP000053268    UP000053240    UP000027135    + More
UP000075840    UP000069272    UP000075920    UP000183832    UP000037069    UP000075883    UP000069940    UP000249989    UP000095301    UP000007266    UP000030765    UP000007801    UP000001819    UP000076407    UP000095300    UP000192221    UP000268350    UP000094527    UP000000803    UP000009046    UP000075886    UP000007062    UP000076408    UP000009192    UP000007798    UP000002282    UP000092460    UP000008792    UP000198287    UP000053097    UP000000311    UP000000305    UP000092445    UP000076502    UP000242457    UP000005205    UP000005203    UP000075809    UP000053825    UP000279307    UP000078542    UP000078492    UP000078540    UP000076858   

PRIDE

H9JK88    Q9VHQ8    B5X504    Q9VHR2   

Pfam

PF08205   C2-set_2        + More
PF13895   Ig_2
PF07679   I-set

Interpro

IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR013162   CD80_C2-set       
IPR013098   Ig_I-set       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A2H1V8C3   A0A3S2NLT4   H9JK88   A0A212FGA5   A0A194PQV4   A0A0N1IAT8   + More
A0A194PSG0   A0A067QK27   A0A182I8N7   A0A182F9A9   A0A182W155   A0A1J1IH42   A0A0L0BPR8   A0A182MD52   A0A182GR80   A0A1I8M182   A0A139WLQ8   A0A084VEE9   B3LZK5   A0A0P9AP37   Q295P3   A0A0N8P1B3   A0A1Y9IZV1   A0A1I8QAT0   A0A0R3NJ28   A0A1W4VTB0   A0A3B0KH40   A0A1D2N0V7   A0A1W4VTZ4   A0A126GUS1   A0A126GUR3   Q9VHQ8   A0A0R3NP57   A0A0R3NQS8   A0A1W4VUN3   A0A1W4VGC4   B5X504   E0W270   A0A182QVU9   Q7QFT8   A0A182XX40   B4KD35   A0A1W4VGL5   B4N9A1   A0A0B4K609   A0A0R1E1N3   A0A0B4K642   A0A034WGA0   A0A1B0B5M4   A0A0A1XJT7   Q9VHR2   W8C0L2   W8B1Y8   B4LZM1   A0A226ETC0   A0A026W2F3   E2AQP1   F5HJC7   E9GS53   A0A0P4YQI9   A0A1B0AC74   A0A154PGV5   A0A0C9RPS0   A0A0C9QBZ9   A0A2A3EJ29   A0A158NE28   A0A088A2P4   A0A151XED5   A0A0L7RBK8   A0A3L8E0B7   A0A0K2VEP7   A0A2P2I5N8   A0A151IF28   A0A195DB68   A0A0C9R6P0   A0A0P4XRC3   A0A0P5BGU0   A0A0P5MWX0   A0A0P5YZD4   A0A0P5BDB4   A0A0P5LB48   A0A1J1IJ21   A0A0P5UTM1   A0A0P5AM18   A0A195BP15   A0A0P6EVR9   A0A0N8AS41   A0A0P5YHC0   A0A164Z592   A0A0P5S452   A0A0P5ICW1   A0A0P5EIR9   A0A0N8C6Z2   A0A0P6EVV5   A0A0P5BF28   A0A0N8EEH0  

PDB

5LFU     E-value=8.25623e-14,     Score=189

KEGG

101736889    no KO assigned | (RefSeq) hemicentin-1

GO

GO:0016021   GO:0005515   GO:0006950   GO:0004888   GO:0007166   GO:0016020   GO:0035023   GO:0016742   GO:0003824  

Length:

587

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.28398

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00003

outside

1  -  481

TMhelix

482  -  504

inside

505  -  587

 

 

Pi

286.001524

Theta

163.320268

Tajima's D

2.624291

CLR

0.537563

CSRT

0.955102244887756

Interpretation

Uncertain