Silkworm Genome Informatics Database

Gene

KWMTBOMO04691 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009817

Annotation

replication_protein_A3_[Bombyx_mori]

Location

Bomo_Chr8(+):12584859-12585402 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.53

CDS

ATGGGTGATCACGACGAATTTGAAGACAACCAATTTCCCAATAACGACGAATTCATTCCATACGTTACGGCCGGTAATCTTGCTTCAAAAAATGGCGCTAAAGTAACACTTTGGGGAAAAGTTACTAGAGTTTCAGCTAGTGAAGGATTTTATGTGAAAACCGTAGACGATCAAGAAGTATTGATACGTTTGAGGAAACCTTTAGATGAGCCACTAGAAGGATGGTATGAAATAATCGGCGTATCACAAGGTAAAACTGTACTGTGCGAAGATTATGTTTCTCTGCCGGACAACATTACAGCAAACATTGATATTGATGGTCACAAAGCTTTGGCCAAGTTATTAGCGGCCTTAGATGATCCTTGGAATCTTGGAGAGAATAGCCATACTGAATTAGAGTACTGA

Protein

MGDHDEFEDNQFPNNDEFIPYVTAGNLASKNGAKVTLWGKVTRVSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIGVSQGKTVLCEDYVSLPDNITANIDIDGHKALAKLLAALDDPWNLGENSHTELEY

Uniprot

Q5TLD1 A0A194QTG7 A0A2A4IU09 A0A0L7K2T0 A0A3S2M4S7 A0A194PSE6 + More
S4NR10 A0A212FDI6 A0A2H1V1X4 A0A067R9A9 A0A2R7W6I3 R4WNY2 A0A182M6M7 A0A182R7S6 A0A1B6DMY0

Pubmed

19121390 26354079 26227816 23622113 22118469 24845553 + More
23691247

EMBL

BABH01040639 AB194778 BAD69791.1 KQ461154 KPJ08604.1 NWSH01008180 + More
PCG62662.1 JTDY01015222 KOB51964.1 RSAL01000041 RVE50928.1 KQ459595 KPI95679.1 GAIX01014632 JAA77928.1 AGBW02009053 OWR51790.1 ODYU01000121 SOQ34352.1 KK852804 KDR16179.1 KK854382 PTY15292.1 AK417381 BAN20596.1 AXCM01000013 GEDC01023726 GEDC01010273 JAS13572.1 JAS27025.1

Proteomes

UP000005204 UP000053240 UP000218220 UP000037510 UP000283053 UP000053268 + More
UP000007151 UP000027135 UP000075883 UP000075900

PRIDE

Q5TLD1

Pfam

PF08661 Rep_fac-A_3

Interpro

IPR013970 Rfa2 + More
IPR012340 NA-bd_OB-fold

SUPFAM

SSF50249 SSF50249

ProteinModelPortal

Q5TLD1 A0A194QTG7 A0A2A4IU09 A0A0L7K2T0 A0A3S2M4S7 A0A194PSE6 + More
S4NR10 A0A212FDI6 A0A2H1V1X4 A0A067R9A9 A0A2R7W6I3 R4WNY2 A0A182M6M7 A0A182R7S6 A0A1B6DMY0

PDB

2Z6K E-value=0.0429477, Score=79

KEGG

692486 K10740 replication factor A3 | (RefSeq) Rpa3, BmRPA3; replication protein A3

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)
03440    Homologous recombination - Bombyx mori (domestic silkworm)
03460    Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634 GO:0006260 GO:0003677 GO:0006281 GO:0006310 GO:0017070 GO:0035023 GO:0005515 GO:0016742 GO:0003824

Length:

134

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00416

Exp number, first 60 AAs:

0.00416

Total prob of N-in:

0.11525

outside

1 - 134

Pi

138.9276

Theta

128.385212

Tajima's D

0.317542

CLR

34.632093

CSRT

0.471576421178941

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics