Gene

KWMTBOMO04688

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr8(-):12544078-12545088      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.386

CDS

ATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTCTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCAATGTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCTCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCGTACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCAACGGTAA

Protein

MLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPNVTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGQR

Uniprot

Q6UV17   Q5KTM5   A0A3S2LP03   A0A3S2KYN2   A0A3S2NHP4   A0A3S2LQP1   + More
A0A3S2NMX8   A0A3S2P9Q3   A0A2H1VFZ3   A0A3S2NMS5   A0A3S2NTH0   J9GT67   A0A0P4VXU0   A0A2H1WCG9   A0A3D5S1K1   T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A147BU27   A0A131Y4I8   A0A2G8JWN9   A0A090XE26   A0A1E1XN74   K1QCH1   A0A1E1XNW6   A0A1E1XNL1   V5HJ96   A0A147BJ69   A0A147BJQ0   A0A1E1X2T1   A0A131XQR9   A0A1E1X2P5   A0A131XRE4   A0A131Y4Q4   W4Y3H0   A0A0P4VVV8   A0A2B4RTL1   A0A131XUZ5   A0A147BQ97   A0A147BNC9   A0A1E1XJ46   A0A0P4VTV9   A0A1E1X2R3   A0A1G4M5I2   K7F0M6   A0A2H9T4Q5   A0A131Y3E3   A0A147BNQ9   A0A1E1XM20   A0A1E1XKZ0   K7F0Q3   W4Z145   A0A210QN79   W4ZK03   K7EY34   A0A131XT39   A0A131Y3W4   A0A147BMA3   A0A224YY96   A0A2H9T3F5   A0A2G8KET5   A0A147BLD9  

Pubmed

23251564    30148503    24065732    28345194    28503490    29023486    + More
25970599    29209593    22992520    25765539    29652888    17381049    29150518    28812685    28797301   

EMBL

AY359886    AAQ57129.1    AB126052    BAD86652.1    RSAL01002067    RVE40593.1    + More
RSAL01000487    RVE41561.1    RSAL01003136    RVE40332.1    RSAL01000422    RVE41792.1    RSAL01000002    RVE55041.1    RVE55094.1    RSAL01000164    RVE45343.1    ODYU01002162    SOQ39302.1    RVE54942.1    RSAL01000090    RVE48098.1    AMCI01002135    EJX03495.1    GDRN01105059    JAI57791.1    ODYU01007423    SOQ50184.1    DPOC01000269    HCX22453.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEGO01001118    JAR94286.1    GEFM01002394    JAP73402.1    MRZV01001153    PIK40187.1    GBIH01002577    JAC92133.1    GFAA01002657    JAU00778.1    JH815916    EKC31648.1    GFAA01002479    JAU00956.1    GFAA01002514    JAU00921.1    GANP01010920    JAB73548.1    GEGO01004630    JAR90774.1    GEGO01004433    JAR90971.1    GFAC01005646    JAT93542.1    GEFM01006417    JAP69379.1    GFAC01005665    JAT93523.1    GEFM01005882    JAP69914.1    GEFM01002324    JAP73472.1    AAGJ04106435    GDRN01111277    JAI56804.1    LSMT01000297    PFX20951.1    GEFM01006320    JAP69476.1    GEGO01002473    JAR92931.1    GEGO01003111    JAR92293.1    GFAA01004201    JAT99233.1    GDRN01111334    JAI56796.1    GFAC01005670    JAT93518.1    FLMD02000280    SCV66640.1    AGCU01117142    NSIT01000239    PJE78188.1    GEFM01002419    JAP73377.1    GEGO01003312    JAR92092.1    GFAA01003161    JAU00274.1    GFAA01003546    JAT99888.1    AGCU01204861    AAGJ04019135    NEDP02002733    OWF50189.1    AAGJ04028970    AGCU01124247    GEFM01006421    JAP69375.1    GEFM01001613    JAP74183.1    GEGO01003518    JAR91886.1    GFPF01007594    MAA18740.1    NSIT01000412    PJE77717.1    MRZV01000639    PIK46517.1    GEGO01003794    JAR91610.1   

Proteomes

UP000283053    UP000230750    UP000005408    UP000007110    UP000225706    UP000007267    + More
UP000242188   

PRIDE

Q6UV17    Q5KTM5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF01873   eIF-5_eIF-2B
PF04939   RRS1
PF08159   NUC153

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR007023   Ribosom_reg       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR028082   Peripla_BP_I       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF75689   SSF75689       
SSF100966   SSF100966       
SSF50978   SSF50978       
SSF53822   SSF53822       

Gene 3D

3.60.10.10     3.30.70.330    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   Q5KTM5   A0A3S2LP03   A0A3S2KYN2   A0A3S2NHP4   A0A3S2LQP1   + More
A0A3S2NMX8   A0A3S2P9Q3   A0A2H1VFZ3   A0A3S2NMS5   A0A3S2NTH0   J9GT67   A0A0P4VXU0   A0A2H1WCG9   A0A3D5S1K1   T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A147BU27   A0A131Y4I8   A0A2G8JWN9   A0A090XE26   A0A1E1XN74   K1QCH1   A0A1E1XNW6   A0A1E1XNL1   V5HJ96   A0A147BJ69   A0A147BJQ0   A0A1E1X2T1   A0A131XQR9   A0A1E1X2P5   A0A131XRE4   A0A131Y4Q4   W4Y3H0   A0A0P4VVV8   A0A2B4RTL1   A0A131XUZ5   A0A147BQ97   A0A147BNC9   A0A1E1XJ46   A0A0P4VTV9   A0A1E1X2R3   A0A1G4M5I2   K7F0M6   A0A2H9T4Q5   A0A131Y3E3   A0A147BNQ9   A0A1E1XM20   A0A1E1XKZ0   K7F0Q3   W4Z145   A0A210QN79   W4ZK03   K7EY34   A0A131XT39   A0A131Y3W4   A0A147BMA3   A0A224YY96   A0A2H9T3F5   A0A2G8KET5   A0A147BLD9  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0005634  

PANTHER

PTHR13288   PTHR17602   PTHR14927  

Length:

305

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3e-05

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01808

outside

1  -  305

 

 

Pi

44.737754

Theta

62.982581

Tajima's D

-1.044812

CLR

0

CSRT

0.128343582820859

Interpretation

Uncertain