Gene

KWMTBOMO04681  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005523

Annotation

PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]

Location

Bomo_Chr8(+):12052169-12073632      View in EpiBrowser

Full name

Transcription elongation factor spt6      

Location in the cell

Nuclear   Reliability : 3.885

CDS

ATGTCAGACTTTCTGGAATCTGAAGCAGAGGAGAGCGAGTTGGATTCTGAGGCAGAAGAGCAGCCGGCAGAACGTAAAAAACATAAACGGAAAGCAGTTCAAAGTGACGACGAAGACGAAGAAGAAGAAGATGACGAGGAACGTCTCCGAGAAGAACTTAAAGATTTGATAGATGATGCACCAATAGAAGAATCAGGAAGTGATGGCGAGGACTCTGATGCTAGTGTAGGACCAAAGAAAAGAAAAAAAAGTGATGATGAATTGGATGATCGGCTTGAAGATGAAGATTATGATCTCATTGAAGAAAATCTTGGTGTAAAAGTTGCAAGAAACAAATTTAAACGTCTACGTCGACTGGAAGATGACGACAGTGACAATGAAGGGGCAGATGATCCTGACCTGGAAAGAGAAGTTATTGCAGAGAAATTGTTTGTTGGTGGTTCTGATGAGGAAGATGAGAATCGTTCCGATTCAGCCGCACCACGTGGTGATGTAGAATATGATGATGATAATGAAGAGTTGGAATCAGATGCTGATGATTTTATTGTTGATGATGATGGTAGACCAATAGCTGAACGCAAAAAGAAACGCAAACCTATATTTACTGATGCGTCACTGCAAGAAGGTCAAGATATATTCGGTGTAGATTTTGACTATGATGAATTTGAAAAATATGGCGAAGAAGATTACGAGGATGAAGACGAAGAGGATCTGGATGAATATATTGAAGATGATGAAGAGGAAGGTGAAAGACGTAGGACAAAGAAGGGTAAAGCTAAAAGGCCAAGCAAGAAGTCGATCTTCGAAATATACGAACCCAGTGAATTGAAGAGAAGTCACTTTACTGATTTGGATAATGAGATACGTAAAACTGATGTTCCTGAACGTATGCAAACTCGTGAAGTGCCTATAACTCCAGTGGAGGAAGGCAGTAATGAATTGGAAGAAGAGGCAGAATGGATTTACAAGCAGGCTTTCTTGAAGCCTTCAGTTTCCAAAGCTGATGCACAGGACGCCAGGGAGAGAACTAGACGAGGTTCAAGTACAATAACGAAGATTCGTCAAGCGCTTGACTTCATGCGAAATCAGACCTTAGAAGTGCCTTTCATAGCGTTCTACCGTAAGGAATACGTGGAGCCAGAACTCAGTATCAACGATCTGTGGAAAGTTTATAAATATGATGCTAAGTGGTGTCAGCTCAAACAACGGAAAGAGAATTTGCTGAAGCTATTCGAGAACATGCGTGATTATCAATTGGACAAAGTAATGGAGAATCCCGATGCTCCCATACCTGAAAACATGAGACTCGTCAAAGATGAAGATATAGAAAGATTGAAATCTGTACAAACTCCTGAAGAGCTGCGGGACGTACACGCTCATTTCCTGTTGTACTATTCCTGTGAACTTCCCGAAATGCAGAGAGTACAACGCATCAAGGAACGGAAGAAGGAACTTGAGGAACGAAAAAAACTTGCTCGGGAAGAGGCCGAAAAGAACGGGGAAGATGCAGAGGAAGCAGCAGCAGCCATTGAAGCTATAGAACTTGACGAAGAAGACCTAACGGACATCAAATACGCAGCCAAATCGGGACCTTATGAACTGTGCAGGAAGGCTGGTATCGAGCCCCTCGTTAAGAAGTTTGGTTTAACTCCGGAACAGTTTGCCGAGAACGTTCGCGACAACTACCAGCGGCACGAGGTGGAACAGCAGCCCGTGGCGCCGCTCGAAGCCGCCGCTGAATACGTGGGTAACATCGGGTCGGCGGCGGAGGTGGTGCGGCGCGCGGTGTACATGTGCGGCGTGCAGCTCGCGCGGGAGCCGCTGCTGCGGGCCACGCTGCGGGACGCGCTGCGGGAGCGGGCCACCGTCTCCATCAAGCCGACCGCCAAGGGCATCAAGGAGATCGACGAGAACCACGCCTGCTACAGCCTCAAATATTTAAAGAAAAAACCAGTTCGAGACATTACCGGTGAACAGTTTCTTAAATTAACAATGGCAGCCGAAGACAAACTGTTAGTGGTCACCATCAGTGAGCAGATCGAGGGCAACACCAGCCCTAGTTACTTAGAGGAATTGAAACAGCTCTATCAAAAGGACGAATTTGCTGCCACAGTACAAGCGTGGAATGAACTTCGCTCAGAGGCGGTCACCATTGCCTTGACCAAGATCGTCATGCCCGAGTTGAGAAGAGAACTGCACGCTGTGCTCTTACAGGAATCTAAAGATTATGTTCTCAAGTGTTGTCGTCGGAGACTGTACGACTGGTTGAAAGTAGCTCCGTACGAGTCTAGAATATCTGATGATGATGATGAGTGGGACGCCTCCAATGGTGTGCGAGTAATGTCGGTGGCGTACGTGCCGGACCGCGCGCACAGTGCGTTCGCGTGCATCGTGGGCCCGGGCGGCGAGGTGGCCGACCATCTGCGGCTGCCGCACCTGCTGTACCGGCGGAACGCCTGGGACGCGCTTGAGCGCCGCAACAAGGACGCCGATATGACCGCTCTCAGGAGGTTCATTTGTCGCAAGAAGCCGCACGTGATCGTCATCGGCGGCGAGTCCCGGGAAGCGCTCAATGTTAAAGCCGACATCTCGGACTGCGTTCAGCAGCTGGTGGAGGACGAGCAGTTCCCGAGGATACCTATCGAGATAGCCGACAACCACTTCAGCAAGATTTACAGCAACAGCATACGAGGAAGGAACGATTTCCGTGAATACCCAGACATCCTGCGTCAAGCCATTTGTCAAGGTCGTCTGCTGCAGGATCCGCTGATGGAAATATCGCAGCTGTGCGGCCCGGACGAGGAAATACTGTGCCTCCGATACCATCCGCTGCAGGATCAAATCGCCAAGGACGATCTGCTCGAGGGTATAGAACTGGAATTCGTGAACAGGGTCAACGAAGTGGGCGTCGACGTCAACGAGGCGGTGCTGACGGGCCGAGGGACCGAGCTGCTGCAGTACGTGTGCGGCCTCGGCCCGAGGAAGGCGCAGGCCCTGATAAAACTCTTCAAGCAGACCAACCAGAAGCTGGAGAACAGAACGCAGTTGGTCACGGTCTGTCACATGGGCCCAAAAGTCTTCATAAACTGTTCAGGCTTTATCAGGATAGACACGAACAGCCTCGGCGACAGTACCGAGGCGTACATTGAAGTGCTGGACGGGTCCAGAGTGCACCCGGAGACGTACGAGTGGGCCCGCAAGATGGCGGTCGACGCTTTGGAGTACGAAGACGAGGACGCCAACCCGGCGGGCGCTCTGGAGGAAATCCTCGAGGCTCCAGAGAGACTTAAAGACCTGGACTTGGACGCGTTCGCTGAAGAGCTGGAACGTCAAGGATTCGGTAATAAGAGCATAACCCTGTACGATATTCGAGCGGAATTGAACTCTAGGTACAAGGATCTTAGGGTGTCGTATCGTTCGCCAACGCCCGAGGAACTGTTCGACATTTTAACAAAAGAGTCACCGGATACGTTTTACGTGGGGAAAATGGTCTTAGCGTCTGTGATCGGCATCACGCACAGGAAACCGCAGCGGGAGATGCTGGACCAGGCGACGCCCGTTAGAAACGACGAGACGGGGCTGTGGCAGTGTCCGTTTTGCTTCAAGAATGATTTTCCTGAGCTGTCTGAAGTATGGAGCCATTTCGACGCGGGTGCGTGCCCGGGCCAGGCGACCGGCGTCCGGATCCGGCTGGACAACGGCCTGTCCGGTTACATACACATCAAGAACCTGTCGGACCGCCACGTCACGGATCCGACCGAGAGGGTCCGCATCGGGCAGACCGTGCACTGCCGGGTCATCAAGATCGACGTCGAACGCTTCTCCGTGGACTGCACTTCAAAGTCTTCGGACTTGTTGGATAAGAATAATGAATGGAAACCTCCAAAGGACCCTTACTACGACCAAGAAACGGAAGACAAAGATATACGCAAAGAAAAAGATGCAAAACAGAACAAGGATCGCATGCAGTACGTAAAACGCGTGATAGTACATCCGGCATTCCACAATATCTCGTTTGCGGAGGCTGAAAAGCTTATGGACAAAATGGCACAGGGAGAGGTCATCGTGAGGCCTAGTAGTAAGGGTTCTGACCATTTGACCGTAACGTGGAAAGTCACTGATGGAATTTATCAACACATCGACGTGAGGGAGGAAGGCAAAGAAAATGCTTTCTCATTAGGTCGAAGTCTTTGGATACAGGGATCCGAATTTGAGGATTTGGATGAAATAATAGCTCGTCACGTGACACCGATGGCGGGGCACGCCCGAGATCTCATTGCGTACAAATACTATAAGCCTCTCGGCGGGATCAGGGATAAAGCTGAAGAAATACTCAAGGAGGAGAAAGCCAAAAACCCTAACAAAATTCATTACGTTATCTCGGCCTCGAAGAACTATCCCGGGAGATTTCTACTGTCCTATTTGCCGCGAGCGCGTTGTACGCACGAGTACGTGTCCGTGTCGCCGGACGGGTACAAGTTCCGGCAGCGGATGTTCGACTCTCTTTCGGGATTGCTCAAATGGTTCAAAGAACATTTCCGGGAGCCGCCGCCATCCGGCACGCCGGCACAGCGCGCCGCCGCAGCTCGCACGCCGCACGGCGCAGCCTCCGCTTTATATCAGACTCCCGCCGCCCACACGCCGGCCTTCCACACACCCGCGCACACGCCAGGACCTGCCTATATTAACACCCCCTACACACCATCCGCGCAAACGCCCTACATGACGCCCTTCGCGTCCACGCCGCGGCAGACAGATTTCTTGACGCCTGCGGCACCGCGTCACAAGGCGGCACCGGCGGCCGCCTACACCGAGCCCGCCGACTGGCAGAAGGCAGCTGAAGACTGGGTGCGGCACCGCGGCGGGTCGGCTCGCGACACCCCGCGCCGTACCCCGCGACACGACGCGCGCTCCACCCCGCGGCACGACGCCCGCTCCACGCCGCGCCAGGACGCGCGCTCCACGCCGCGACAAGACGTCCGCTCGACGCCGCGACAAGACGTCCGCACGACGCCGCGTTACGACGCGCGCTCGACGCCGCACTCGCAGATGTACACGCCGACGCACACGCCGCACACGCCGCGCTCGTCCCGCACGCACTCGGCGCGCTCCACGCCGCACACCAACACGTCGCCGCGCTCCATGTCGCTCGGCGACGCGACTCCACTCTACGACGAAAATTGA

Protein

MSDFLESEAEESELDSEAEEQPAERKKHKRKAVQSDDEDEEEEDDEERLREELKDLIDDAPIEESGSDGEDSDASVGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLEDDDSDNEGADDPDLEREVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELESDADDFIVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYEDEDEEDLDEYIEDDEEEGERRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDVPERMQTREVPITPVEEGSNELEEEAEWIYKQAFLKPSVSKADAQDARERTRRGSSTITKIRQALDFMRNQTLEVPFIAFYRKEYVEPELSINDLWKVYKYDAKWCQLKQRKENLLKLFENMRDYQLDKVMENPDAPIPENMRLVKDEDIERLKSVQTPEELRDVHAHFLLYYSCELPEMQRVQRIKERKKELEERKKLAREEAEKNGEDAEEAAAAIEAIELDEEDLTDIKYAAKSGPYELCRKAGIEPLVKKFGLTPEQFAENVRDNYQRHEVEQQPVAPLEAAAEYVGNIGSAAEVVRRAVYMCGVQLAREPLLRATLRDALRERATVSIKPTAKGIKEIDENHACYSLKYLKKKPVRDITGEQFLKLTMAAEDKLLVVTISEQIEGNTSPSYLEELKQLYQKDEFAATVQAWNELRSEAVTIALTKIVMPELRRELHAVLLQESKDYVLKCCRRRLYDWLKVAPYESRISDDDDEWDASNGVRVMSVAYVPDRAHSAFACIVGPGGEVADHLRLPHLLYRRNAWDALERRNKDADMTALRRFICRKKPHVIVIGGESREALNVKADISDCVQQLVEDEQFPRIPIEIADNHFSKIYSNSIRGRNDFREYPDILRQAICQGRLLQDPLMEISQLCGPDEEILCLRYHPLQDQIAKDDLLEGIELEFVNRVNEVGVDVNEAVLTGRGTELLQYVCGLGPRKAQALIKLFKQTNQKLENRTQLVTVCHMGPKVFINCSGFIRIDTNSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEYEDEDANPAGALEEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIRAELNSRYKDLRVSYRSPTPEELFDILTKESPDTFYVGKMVLASVIGITHRKPQREMLDQATPVRNDETGLWQCPFCFKNDFPELSEVWSHFDAGACPGQATGVRIRLDNGLSGYIHIKNLSDRHVTDPTERVRIGQTVHCRVIKIDVERFSVDCTSKSSDLLDKNNEWKPPKDPYYDQETEDKDIRKEKDAKQNKDRMQYVKRVIVHPAFHNISFAEAEKLMDKMAQGEVIVRPSSKGSDHLTVTWKVTDGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGHARDLIAYKYYKPLGGIRDKAEEILKEEKAKNPNKIHYVISASKNYPGRFLLSYLPRARCTHEYVSVSPDGYKFRQRMFDSLSGLLKWFKEHFREPPPSGTPAQRAAAARTPHGAASALYQTPAAHTPAFHTPAHTPGPAYINTPYTPSAQTPYMTPFASTPRQTDFLTPAAPRHKAAPAAAYTEPADWQKAAEDWVRHRGGSARDTPRRTPRHDARSTPRHDARSTPRQDARSTPRQDVRSTPRQDVRTTPRYDARSTPHSQMYTPTHTPHTPRSSRTHSARSTPHTNTSPRSMSLGDATPLYDEN

Description

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII).

Similarity

Belongs to the SPT6 family.
Belongs to the complex I 75 kDa subunit family.

Uniprot

A0A194PSD6   A0A194QSZ4   A0A2H1UZS9   A0A2Z5U7L9   W4VRT5   D6WXD8   + More
A0A067QFM3   A0A2A3EMG3   A0A1Y1L3J2   A0A146LTI5   T1DJP1   A0A0T6B6I8   A0A158NV43   A0A026X390   A0A0C9RW52   E2BUP9   Q174B1   A0A2A3EIS1   A0A3L8DNC1   A0A1S4FF27   F4W4Y7   A0A0V0G420   A0A224XHL2   A0A069DYA4   A0A0P4W526   A0A336LY91   E2A0W0   E0VDI2   A0A084WSG6   A0A088A1N1   A0A1Q3G1Z0   A0A0A1WSA9   A0A0L0CQS7   A0A034W2H5   A0A0K8VCD8   W8BBN9   A0A023F2J5   U4TUM8   N6TC73   A0A1I8NPK4   T1E3R0   A0A1L8DH84   A0A232EVV2   A0A1B0CTQ7   A0A1B0GP68   A0A1B0BJV8   A0A1A9Y2V8   A0A1B0A9W7   A0A1B0FGG7   A0A1A9VC79   A0A2H8TYW1   J9JW70   A0A2S2QM12   A0A0P4WWT3   A0A0P5IJ65   A0A0P5ZPD5   A0A0P5XQH9   A0A0P5MT33   A0A0P5WVD6   A0A0P5WWA5   A0A0P5NAZ4   A0A0N8A1U1   A0A0P6HQF9   A0A0P5HE69   A0A0N8A3A9   A0A0P5D4E5   A0A0P5URK1   A0A0P5V3K3   A0A0P5WB38   A0A0P5WQB9   A0A0P5BVU7   A0A0P5D7H6   A0A0N8CRZ7   A0A0P4ZDX0   A0A0P4XZP1   A0A0P5CG71   A0A0P5WVB6   A0A0P5XNS1   A0A0P5DDW0   A0A0P5B1W8   A0A162S1T4   A0A0P5A895   A0A0P4Z3V1   A0A0P5CYX4   A0A0P6BRQ0   A0A0P5ZQX7   A0A0P5U2V3   A0A1I8MQ50   A0A0P5AXD3   A0A2S2PQC3   A0A0P6FZ70   A0A0P5LCN9   A0A0P5W1N7   A0A0P5VGW4   B4PYQ6   E9H8M1   A0A1W4VSH7   B3NXQ3   A0A0Q9X110  

Pubmed

26354079    18362917    19820115    24845553    28004739    26823975    + More
24330624    21347285    24508170    20798317    17510324    30249741    21719571    26334808    27129103    20566863    24438588    25830018    26108605    25348373    24495485    25474469    23537049    28648823    25315136    17994087    17550304    21292972   

EMBL

KQ459595    KPI95669.1    KQ461154    KPJ08592.1    ODYU01000020    SOQ34079.1    + More
AP017551    BBB06979.1    GANO01000492    JAB59379.1    KQ971361    EFA07995.2    KK853603    KDR06361.1    KZ288215    PBC32462.1    GEZM01065987    JAV68253.1    GDHC01008060    JAQ10569.1    GALA01000146    JAA94706.1    LJIG01009494    KRT82968.1    ADTU01026929    ADTU01026930    ADTU01026931    KK107020    EZA62558.1    GBYB01011996    JAG81763.1    GL450732    EFN80602.1    CH477414    EAT41414.1    KZ288250    PBC31089.1    QOIP01000006    RLU21723.1    GL887596    EGI70683.1    GECL01003342    JAP02782.1    GFTR01008897    JAW07529.1    GBGD01000058    JAC88831.1    GDKW01000116    JAI56479.1    UFQT01000201    SSX21643.1    GL435626    EFN73013.1    DS235078    EEB11438.1    ATLV01026533    KE525415    KFB53160.1    GFDL01001221    JAV33824.1    GBXI01012756    JAD01536.1    JRES01000148    KNC33789.1    GAKP01010405    JAC48547.1    GDHF01015771    JAI36543.1    GAMC01007910    JAB98645.1    GBBI01002875    JAC15837.1    KB630500    KB630501    ERL83637.1    ERL83638.1    APGK01035658    KB740928    ENN77904.1    GALA01000145    JAA94707.1    GFDF01008281    JAV05803.1    NNAY01001943    OXU22488.1    AJWK01027836    AJWK01027837    AJWK01027838    AJVK01005738    AJVK01005739    AJVK01005740    AJVK01005741    AJVK01005742    AJVK01005743    AJVK01005744    AJVK01005745    JXJN01015637    CCAG010008765    GFXV01007166    MBW18971.1    ABLF02034749    GGMS01009592    MBY78795.1    GDIP01253901    JAI69500.1    GDIQ01213578    JAK38147.1    GDIP01041478    JAM62237.1    GDIP01081124    JAM22591.1    GDIQ01151601    JAL00125.1    GDIP01081123    JAM22592.1    GDIP01081122    JAM22593.1    GDIQ01151600    JAL00126.1    GDIP01190809    JAJ32593.1    GDIQ01015695    JAN79042.1    GDIQ01229121    JAK22604.1    GDIP01186665    JAJ36737.1    GDIP01166611    JAJ56791.1    GDIP01109518    JAL94196.1    GDIP01104670    JAL99044.1    GDIP01101769    JAM01946.1    GDIP01083122    JAM20593.1    GDIP01181959    GDIP01179208    GDIP01118717    GDIP01084822    JAJ44194.1    GDIP01161959    JAJ61443.1    GDIP01104671    JAL99043.1    GDIP01215061    JAJ08341.1    GDIP01235608    JAI87793.1    GDIP01186666    JAJ36736.1    GDIP01093120    JAM10595.1    GDIP01069425    JAM34290.1    GDIP01162862    JAJ60540.1    GDIP01190810    JAJ32592.1    LRGB01000084    KZS20950.1    GDIP01215063    GDIP01118716    GDIP01088424    GDIP01083121    GDIP01044130    GDIP01037184    GDIP01035332    JAJ08339.1    GDIP01220956    GDIP01165911    GDIP01088423    GDIP01044129    GDIP01038629    JAJ02446.1    GDIP01167711    JAJ55691.1    GDIP01025746    JAM77969.1    GDIP01040578    JAM63137.1    GDIP01120765    JAL82949.1    GDIP01192958    JAJ30444.1    GGMR01019004    MBY31623.1    GDIQ01051944    JAN42793.1    GDIQ01171639    JAK80086.1    GDIP01093121    JAM10594.1    GDIP01101770    JAM01945.1    CM000162    EDX00992.1    GL732605    EFX71841.1    CH954180    EDV47354.1    CH964239    KRF99561.1   

Proteomes

UP000053268    UP000053240    UP000007266    UP000027135    UP000242457    UP000005205    + More
UP000053097    UP000008237    UP000008820    UP000279307    UP000007755    UP000000311    UP000009046    UP000030765    UP000005203    UP000037069    UP000030742    UP000019118    UP000095300    UP000215335    UP000092461    UP000092462    UP000092460    UP000092443    UP000092445    UP000092444    UP000078200    UP000007819    UP000076858    UP000095301    UP000002282    UP000000305    UP000192221    UP000008711    UP000007798   

Pfam

PF14633   SH2_2        + More
PF17674   HHH_9
PF00575   S1
PF14635   HHH_7
PF14639   YqgF
PF14632   SPT6_acidic
PF14641   HTH_44
PF00384   Molybdopterin
PF09326   NADH_dhqG_C
PF10588   NADH-G_4Fe-4S_3
PF00098   zf-CCHC

Interpro

IPR028231   Spt6_YqgF        + More
IPR028083   Spt6_acidic_N_dom       
IPR003029   S1_domain       
IPR035018   Spt6_SH2_C       
IPR041692   HHH_9       
IPR028088   Spt6_HTH_DNA-bd_dom       
IPR022967   S1_dom       
IPR006641   YqgF/RNaseH-like_dom       
IPR036860   SH2_dom_sf       
IPR035420   Spt6_SH2       
IPR012340   NA-bd_OB-fold       
IPR017072   TF_Spt6       
IPR032706   Spt6_HHH       
IPR010994   RuvA_2-like       
IPR000980   SH2       
IPR012337   RNaseH-like_sf       
IPR035019   Spt6_SH2_N       
IPR023323   Tex-like_dom_sf       
IPR037027   YqgF/RNaseH-like_dom_sf       
IPR023319   Tex-like_HTH_dom_sf       
IPR042066   Spt6_death-like       
IPR006963   Mopterin_OxRdtase_4Fe-4S_dom       
IPR019574   NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd       
IPR000283   NADH_UbQ_OxRdtase_75kDa_su_CS       
IPR010228   NADH_UbQ_OxRdtase_Gsu       
IPR001041   2Fe-2S_ferredoxin-type       
IPR036010   2Fe-2S_ferredoxin-like_sf       
IPR015405   NuoG_C       
IPR006656   Mopterin_OxRdtase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF47781   SSF47781        + More
SSF53098   SSF53098       
SSF55550   SSF55550       
SSF50249   SSF50249       
SSF54292   SSF54292       
SSF57756   SSF57756       

Gene 3D

3.30.505.10     1.10.10.2740     1.10.10.650     1.10.3500.10     3.30.420.140    

CDD

cd09928  SH2_Cterm_SPT6_like
cd09918  SH2_Nterm_SPT6_like
cd00207  fer2

ProteinModelPortal

A0A194PSD6   A0A194QSZ4   A0A2H1UZS9   A0A2Z5U7L9   W4VRT5   D6WXD8   + More
A0A067QFM3   A0A2A3EMG3   A0A1Y1L3J2   A0A146LTI5   T1DJP1   A0A0T6B6I8   A0A158NV43   A0A026X390   A0A0C9RW52   E2BUP9   Q174B1   A0A2A3EIS1   A0A3L8DNC1   A0A1S4FF27   F4W4Y7   A0A0V0G420   A0A224XHL2   A0A069DYA4   A0A0P4W526   A0A336LY91   E2A0W0   E0VDI2   A0A084WSG6   A0A088A1N1   A0A1Q3G1Z0   A0A0A1WSA9   A0A0L0CQS7   A0A034W2H5   A0A0K8VCD8   W8BBN9   A0A023F2J5   U4TUM8   N6TC73   A0A1I8NPK4   T1E3R0   A0A1L8DH84   A0A232EVV2   A0A1B0CTQ7   A0A1B0GP68   A0A1B0BJV8   A0A1A9Y2V8   A0A1B0A9W7   A0A1B0FGG7   A0A1A9VC79   A0A2H8TYW1   J9JW70   A0A2S2QM12   A0A0P4WWT3   A0A0P5IJ65   A0A0P5ZPD5   A0A0P5XQH9   A0A0P5MT33   A0A0P5WVD6   A0A0P5WWA5   A0A0P5NAZ4   A0A0N8A1U1   A0A0P6HQF9   A0A0P5HE69   A0A0N8A3A9   A0A0P5D4E5   A0A0P5URK1   A0A0P5V3K3   A0A0P5WB38   A0A0P5WQB9   A0A0P5BVU7   A0A0P5D7H6   A0A0N8CRZ7   A0A0P4ZDX0   A0A0P4XZP1   A0A0P5CG71   A0A0P5WVB6   A0A0P5XNS1   A0A0P5DDW0   A0A0P5B1W8   A0A162S1T4   A0A0P5A895   A0A0P4Z3V1   A0A0P5CYX4   A0A0P6BRQ0   A0A0P5ZQX7   A0A0P5U2V3   A0A1I8MQ50   A0A0P5AXD3   A0A2S2PQC3   A0A0P6FZ70   A0A0P5LCN9   A0A0P5W1N7   A0A0P5VGW4   B4PYQ6   E9H8M1   A0A1W4VSH7   B3NXQ3   A0A0Q9X110  

PDB

6GMH     E-value=0,     Score=3437

KEGG

101738765    K11292 transcription elongation factor SPT6 | (RefSeq) transcription elongation factor SPT6

GO

GO:0003746   GO:0005634   GO:0032968   GO:0006139   GO:0003677   GO:0003676   GO:0006368   GO:0035327   GO:0042789   GO:0070827   GO:0008023   GO:0031491   GO:0034728   GO:0050684   GO:0042393   GO:0042773   GO:0051536   GO:0016020   GO:0009055   GO:0008137   GO:0008270   GO:0006366   GO:0035363   GO:0005703   GO:0006963   GO:0000993   GO:0030707   GO:0003682   GO:0005705   GO:0006357   GO:0032784   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

PANTHER

PTHR10145  

Subcellular location

Nucleus  

Length:

1727

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1  -  1727

 

 

Pi

250.522028

Theta

176.032585

Tajima's D

1.555112

CLR

0.191063

CSRT

0.803709814509275

Interpretation

Uncertain