Gene

KWMTBOMO04679  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005286

Annotation

RNA_m5u_methyltransferase_[Danaus_plexippus]

Location

Bomo_Chr8(-):12028182-12037598      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.832

CDS

ATGGATAAATCAAATCGCAGTGTTATTGAAGCTAACAGGAAAATATACAACGGTCTGAGTTTTGAACTAAAGCCCATTGAAAAATCTCCTGTCTTAGATGGCTACAGGAATAAATGCGAGTTTACAATTGGTATTGATGATGAGACTAAGTTACCCACCGTTGGGTTTAGATTGGGTAGTTATGTGACTGGTACAGTGGCTGTGGCACCCATAGAAATGTTGATACATATACCCGAGAGAACGAAACAGGCTGTTTTGGTATTCCAAGACTTTGTCCGTAAATCTGGATTAGCTCCATTCTCTCCGGCTGACTATTCTGGATACTGGCGTTATTTGACCGTCAGGCAGTCAACATCGAATGGTGACGTCATGTTAATTGCGTCCATGTATCCTCAGAATTTAACTGAGAGTGAAATAGAAAAAATTAAAAATGACTTGATAGAACATTGTAGTTCTAAAGAAGTTGATTGTGGGATTAAATCATTGTATTTTGAGTTGATCACTAAAAGGAGGGTTGGTGAAGAACCAACAAAGCCTACACACTTAATGGGATCAACTCATATCATTGACACAATATTGGGGAGACAGTTTCGGATTTCCCCAGAAGCATTCTTTCAGATAAACACAGCCGGTGCTGAAATACTGTATCAAAAGGCTATTGAACTGAGTGAAGTCAAAGAGGATTCGACTGTGATAGATATTTGTTGTGGGACCGGCACGATAGGCCTGTGTTTTGCTAAACACTGCGGTAAAGTTTTAGGCTTAGAATTGGTACCGGAAGCTGTGAAGGACGCTAAAGCAAATGCTGAACTTAACGAAATCGAAAATAGTGAGTTCTACACGGGGAAAGCTGAAGATATACTACCCTCGGTGCTGGCCAGGGCCACCGGAGACGATGTTATTGCGATTGTTGATCCCCCAAGAGCTGGACTCCACATGCGCGCCGTGACGCAGCTGCGCAACAGCCGGCGCGTGCGGCGCGTGCTGTACGTGTCGTGCCGGCCCGCCGCCGCGCTCAAGAACTGGGTGGACCTCGCTCGGCCCTCCTCCAAGACTCTCCGCGGTGCCCCCTTCCGCCCGCGCCGGGCCCTGCCCCTCGACATGTTCCCGCACACCGACCACATCGAGCTCGCCTTGCTGTTCGAGAGGGAACAGACGAAAGAAGATACCGAAGGAAGTTCGGAAACAGTGGAAGACAGCAGTGCGGCACCGGACGTGGAGAATAAAGATAATAATTAG

Protein

MDKSNRSVIEANRKIYNGLSFELKPIEKSPVLDGYRNKCEFTIGIDDETKLPTVGFRLGSYVTGTVAVAPIEMLIHIPERTKQAVLVFQDFVRKSGLAPFSPADYSGYWRYLTVRQSTSNGDVMLIASMYPQNLTESEIEKIKNDLIEHCSSKEVDCGIKSLYFELITKRRVGEEPTKPTHLMGSTHIIDTILGRQFRISPEAFFQINTAGAEILYQKAIELSEVKEDSTVIDICCGTGTIGLCFAKHCGKVLGLELVPEAVKDAKANAELNEIENSEFYTGKAEDILPSVLARATGDDVIAIVDPPRAGLHMRAVTQLRNSRRVRRVLYVSCRPAAALKNWVDLARPSSKTLRGAPFRPRRALPLDMFPHTDHIELALLFEREQTKEDTEGSSETVEDSSAAPDVENKDNN

Similarity

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.

Uniprot

H9J6Z4   A0A2H1WMK9   A0A2H1UZQ0   A0A2A4IVR4   A0A212EIN2   A0A194PQS9   + More
A0A2Z5U7M9   S4PLB7   A0A2J7PM06   A0A067R8Z7   A0A2J7PM02   Q17NM7   A0A182GFX9   D6WVM0   A0A1Y1LUI3   A0A026VSE5   A0A3L8DCG6   A0A1Y1LUL4   W5JGM8   A0A1Q3EZ50   B0X3M6   A0A151WWA3   F4X6B1   A0A151J3R3   A0A0J7KYM6   A0A158P0Q6   A0A084WIW9   A0A195FYY7   A0A195B1U1   A0A2M4AVF9   E2AVU8   A0A3F2YXP0   A0A195CXF2   N6U7G0   B0WFQ3   A0A182JJ72   A0A182SF43   A0A3F2YX70   A0A1B6D834   E2CA93   A0A182M023   Q7Q0E4   A0A182KSA4   A0A3F2YU11   A0A1Y9IVJ4   A0A182UHR1   A0A182V9X5   E9IYJ1   E0VCT9   A0A1L8DC01   B4LD33   A0A1I8NGG8   A0A154PSV8   T1PCJ6   A0A1B6F487   A0A310S4M4   Q29DJ3   A0A3B0J8E6   A0A0L7QVJ7   B4N4R7   Q95R49   B4PH07   A0A1W4UBW2   Q9VVV7   B4IFY7   A0A0J9UP18   B5RIS0   B4QQB8   B4KZ91   B4IU84   W8C554   B3NDW6   A0A1B6J213   A0A2A3ELA1   A0A182Y1G5   B4IY53   A0A0A1XQN7   B3M7Q0   A0A1I8NZX1   A0A0M4EJK6   A0A1B6MKH0   A0A087ZWF9   A0A1A9W3F1   A0A034WPP2   A0A0L0CAS5   A0A0N1IU26   A0A0K8W5B7   A0A1J1IL58   A0A232FJD1   K7IZ01   A0A2J7PK04   A0A0V0G615   A0A069DVB8   A0A087SY41   A0A023F1R7   C3XVW9   A0A0P4WAU1   A0A146KMC2   K1QUQ4   A0A1A9YID1  

Pubmed

19121390    22118469    26354079    23622113    24845553    17510324    + More
26483478    18362917    19820115    28004739    24508170    30249741    20920257    23761445    21719571    21347285    24438588    20798317    23537049    12364791    20966253    21282665    20566863    17994087    25315136    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    24495485    25244985    25830018    18057021    25348373    26108605    28648823    20075255    26334808    25474469    18563158    26823975    22992520   

EMBL

BABH01014074    ODYU01009636    SOQ54206.1    ODYU01000020    SOQ34077.1    NWSH01005952    + More
PCG63811.1    AGBW02014614    OWR41335.1    KQ459595    KPI95667.1    AP017551    BBB06976.1    GAIX01004105    JAA88455.1    NEVH01024421    PNF17366.1    KK852807    KDR16066.1    PNF17365.1    CH477198    EAT48287.1    JXUM01060640    KQ562111    KXJ76670.1    KQ971357    EFA08275.1    GEZM01046353    JAV77304.1    KK108837    EZA46612.1    QOIP01000010    RLU17608.1    GEZM01046349    JAV77309.1    ADMH02001279    ETN63241.1    GFDL01014527    JAV20518.1    DS232318    EDS39918.1    KQ982691    KYQ52037.1    GL888802    EGI58019.1    KQ980254    KYN17079.1    LBMM01001880    KMQ95617.1    ADTU01005733    ATLV01023952    KE525347    KFB50163.1    KQ981200    KYN45039.1    KQ976667    KYM78255.1    GGFK01011439    MBW44760.1    GL443213    EFN62370.1    KQ977141    KYN05343.1    APGK01040122    KB740975    KB632267    ENN76561.1    ERL91006.1    DS231920    EDS26397.1    AXCN02001026    GEDC01015450    JAS21848.1    GL453952    EFN75142.1    AXCM01006744    AAAB01008986    EAA00138.4    GL767018    EFZ14341.1    DS235065    EEB11195.1    GFDF01010179    JAV03905.1    CH940647    EDW69914.1    KQ435127    KZC14847.1    KA645673    AFP60302.1    GECZ01024697    JAS45072.1    KQ776210    OAD52212.1    CH379070    EAL30421.1    OUUW01000002    SPP76543.1    KQ414727    KOC62531.1    CH964095    EDW79141.2    AY061614    AAL29162.1    CM000159    EDW95377.1    AE014296    AAF49200.3    CH480834    EDW46574.1    CM002912    KMZ00486.1    BT044194    ACH92259.1    CM000363    EDX11024.1    CH933809    EDW18917.1    CH891818    EDW99947.1    GAMC01001962    JAC04594.1    CH954178    EDV52320.1    GECU01014499    JAS93207.1    KZ288215    PBC32498.1    CH916366    EDV97596.1    GBXI01000986    JAD13306.1    CH902618    EDV40978.1    KPU78867.1    CP012525    ALC45152.1    GEBQ01003566    JAT36411.1    GAKP01001381    JAC57571.1    JRES01000760    KNC28559.1    KQ435713    KOX79321.1    GDHF01006219    JAI46095.1    CVRI01000054    CRL00292.1    NNAY01000120    OXU30785.1    NEVH01024944    PNF16663.1    GECL01002687    JAP03437.1    GBGD01000861    JAC88028.1    KK112487    KFM57780.1    GBBI01003449    JAC15263.1    GG666469    EEN67912.1    GDRN01077962    JAI62655.1    GDHC01020938    JAP97690.1    JH817760    EKC32655.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000235965    UP000027135    + More
UP000008820    UP000069940    UP000249989    UP000007266    UP000053097    UP000279307    UP000000673    UP000002320    UP000075809    UP000007755    UP000078492    UP000036403    UP000005205    UP000030765    UP000078541    UP000078540    UP000000311    UP000075900    UP000078542    UP000019118    UP000030742    UP000075880    UP000075901    UP000075886    UP000008237    UP000075883    UP000007062    UP000075882    UP000075881    UP000075920    UP000075902    UP000075903    UP000009046    UP000008792    UP000095301    UP000076502    UP000001819    UP000268350    UP000053825    UP000007798    UP000002282    UP000192221    UP000000803    UP000001292    UP000000304    UP000009192    UP000008711    UP000242457    UP000076408    UP000001070    UP000007801    UP000095300    UP000092553    UP000005203    UP000091820    UP000037069    UP000053105    UP000183832    UP000215335    UP000002358    UP000054359    UP000001554    UP000005408    UP000092443   

PRIDE

H9J6Z4    Q95R49    Q9VVV7    B5RIS0   

Pfam

PF05958   tRNA_U5-meth_tr        + More
PF13847   Methyltransf_31
PF00076   RRM_1

Interpro

IPR029063   SAM-dependent_MTases        + More
IPR030391   MeTrfase_TrmA_CS       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR010280   U5_MeTrfase_fam       
IPR030390   MeTrfase_TrmA_AS       
IPR025714   Methyltranfer_dom       
IPR034262   TRMT2A_RRM       
IPR000504   RRM_dom       
IPR013320   ConA-like_dom_sf       

SUPFAM

SSF54928   SSF54928        + More
SSF53335   SSF53335       
SSF49899   SSF49899       

Gene 3D

3.30.70.330    

CDD

cd12439  RRM_TRMT2A

ProteinModelPortal

H9J6Z4   A0A2H1WMK9   A0A2H1UZQ0   A0A2A4IVR4   A0A212EIN2   A0A194PQS9   + More
A0A2Z5U7M9   S4PLB7   A0A2J7PM06   A0A067R8Z7   A0A2J7PM02   Q17NM7   A0A182GFX9   D6WVM0   A0A1Y1LUI3   A0A026VSE5   A0A3L8DCG6   A0A1Y1LUL4   W5JGM8   A0A1Q3EZ50   B0X3M6   A0A151WWA3   F4X6B1   A0A151J3R3   A0A0J7KYM6   A0A158P0Q6   A0A084WIW9   A0A195FYY7   A0A195B1U1   A0A2M4AVF9   E2AVU8   A0A3F2YXP0   A0A195CXF2   N6U7G0   B0WFQ3   A0A182JJ72   A0A182SF43   A0A3F2YX70   A0A1B6D834   E2CA93   A0A182M023   Q7Q0E4   A0A182KSA4   A0A3F2YU11   A0A1Y9IVJ4   A0A182UHR1   A0A182V9X5   E9IYJ1   E0VCT9   A0A1L8DC01   B4LD33   A0A1I8NGG8   A0A154PSV8   T1PCJ6   A0A1B6F487   A0A310S4M4   Q29DJ3   A0A3B0J8E6   A0A0L7QVJ7   B4N4R7   Q95R49   B4PH07   A0A1W4UBW2   Q9VVV7   B4IFY7   A0A0J9UP18   B5RIS0   B4QQB8   B4KZ91   B4IU84   W8C554   B3NDW6   A0A1B6J213   A0A2A3ELA1   A0A182Y1G5   B4IY53   A0A0A1XQN7   B3M7Q0   A0A1I8NZX1   A0A0M4EJK6   A0A1B6MKH0   A0A087ZWF9   A0A1A9W3F1   A0A034WPP2   A0A0L0CAS5   A0A0N1IU26   A0A0K8W5B7   A0A1J1IL58   A0A232FJD1   K7IZ01   A0A2J7PK04   A0A0V0G615   A0A069DVB8   A0A087SY41   A0A023F1R7   C3XVW9   A0A0P4WAU1   A0A146KMC2   K1QUQ4   A0A1A9YID1  

PDB

5XJ1     E-value=3.15462e-35,     Score=372

KEGG

101741457    K15332 tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-] | (RefSeq) tRNA (uracil-5-)-methyltransferase

GO

GO:0008173   GO:0003676   GO:0006396   GO:0003723   GO:0008168   GO:0003729   GO:0004497   GO:0005507   GO:0009058   GO:0005089   GO:0035023   GO:0005515   GO:0016742   GO:0003824  

Length:

412

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.43464

Exp number, first 60 AAs:

0.36617

Total prob of N-in:

0.08349

outside

1  -  412

 

 

Pi

281.366962

Theta

198.172031

Tajima's D

1.351028

CLR

0.013472

CSRT

0.749962501874906

Interpretation

Uncertain